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Conserved domains on  [gi|1063737448|ref|NP_001331641|]
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Diacylglycerol kinase family protein [Arabidopsis thaliana]

Protein Classification

diacylglycerol kinase catalytic domain-containing protein( domain architecture ID 546)

diacylglycerol kinase catalytic domain-containing protein is involved in the conversion of diacylglycerol (DAG) to phosphatidic acid (PA), utilizing ATP as a source of the phosphate

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DAGK_cat super family cl01255
Diacylglycerol kinase catalytic domain; Diacylglycerol (DAG) is a second messenger that acts ...
1-422 0e+00

Diacylglycerol kinase catalytic domain; Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The catalytic domain is assumed from the finding of bacterial homologs. YegS is the Escherichia coli protein in this family whose crystal structure reveals an active site in the inter-domain cleft formed by four conserved sequence motifs, revealing a novel metal-binding site. The residues of this site are conserved across the family.


The actual alignment was detected with superfamily member PLN02204:

Pssm-ID: 445337 [Multi-domain]  Cd Length: 601  Bit Score: 848.40  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737448   1 MEEGRDDEYCSFSNSGdRDGGLSGCFFLDHVGQVLLSRNHDGLSWKCLDSSDCEGTTCLGIIICENSETEIKFSDIYAVE 80
Cdd:PLN02204    1 MEEGRDDEHISFSLSG-DRSVLSSCLFLDHVGDVSLTLNSDGLSWKCLDSSDNDGTTCLGIKFCEKSETEIKFSDVYAVE 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737448  81 FVSYGLVHSPKLglRHAKECFRERLLNTQEMYRFTVHGFQSSPKEPCLWNLAAFTFGHMDLQTCQSWMDQLNYSLIKEVE 160
Cdd:PLN02204   80 FINYGLIHSPKL--SHAKGCFRERLSETQEMYRFTVHGFQRSRKEPCLWVLAVYTFGHKDLQTCQSWVDRLNASLNKEVG 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737448 161 RPRNLLVFVHPKSGKGNGSKVWETVSKIFIRAKVNTKVIVTERAGHAFDVMASIQNKELHTYDGIIAVGGDGFFNEILNG 240
Cdd:PLN02204  158 RPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERAGHAFDVMASISNKELKSYDGVIAVGGDGFFNEILNG 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737448 241 YLLSRLKVPLPPSPSDSFNSVQSRGSSSVPEPGDEVHETDQKEHYPLLPDSVQEVMNFRTVNGSCEGIEDPDHPFSSERP 320
Cdd:PLN02204  238 YLLSRLKVPYPPSPSDSVHSVQSRGSSSVHEPNETVHECDNEDHSPLLSDSVQEVMNFRTENGSCEGDQDSDFPFPNERF 317
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737448 321 RFGLIPAGSTDAIVMCTTGARDPVTSALHIILGRKLFLDAMQVVRWKTASTSTIEPYIRYAASFAGYGFYGDVISESEKY 400
Cdd:PLN02204  318 RFGIIPAGSTDAIVMCTTGERDPVTSALHIILGRRVCLDIAQVVRWKTTSTSEIEPYVRYAASFAGYGFYGDVISESEKY 397
                         410       420
                  ....*....|....*....|..
gi 1063737448 401 RWMGPKRYDYVGTKIFLKHRYF 422
Cdd:PLN02204  398 RWMGPKRYDYAGTKVFLKHRSY 419
 
Name Accession Description Interval E-value
PLN02204 PLN02204
diacylglycerol kinase
1-422 0e+00

diacylglycerol kinase


Pssm-ID: 215126 [Multi-domain]  Cd Length: 601  Bit Score: 848.40  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737448   1 MEEGRDDEYCSFSNSGdRDGGLSGCFFLDHVGQVLLSRNHDGLSWKCLDSSDCEGTTCLGIIICENSETEIKFSDIYAVE 80
Cdd:PLN02204    1 MEEGRDDEHISFSLSG-DRSVLSSCLFLDHVGDVSLTLNSDGLSWKCLDSSDNDGTTCLGIKFCEKSETEIKFSDVYAVE 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737448  81 FVSYGLVHSPKLglRHAKECFRERLLNTQEMYRFTVHGFQSSPKEPCLWNLAAFTFGHMDLQTCQSWMDQLNYSLIKEVE 160
Cdd:PLN02204   80 FINYGLIHSPKL--SHAKGCFRERLSETQEMYRFTVHGFQRSRKEPCLWVLAVYTFGHKDLQTCQSWVDRLNASLNKEVG 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737448 161 RPRNLLVFVHPKSGKGNGSKVWETVSKIFIRAKVNTKVIVTERAGHAFDVMASIQNKELHTYDGIIAVGGDGFFNEILNG 240
Cdd:PLN02204  158 RPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERAGHAFDVMASISNKELKSYDGVIAVGGDGFFNEILNG 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737448 241 YLLSRLKVPLPPSPSDSFNSVQSRGSSSVPEPGDEVHETDQKEHYPLLPDSVQEVMNFRTVNGSCEGIEDPDHPFSSERP 320
Cdd:PLN02204  238 YLLSRLKVPYPPSPSDSVHSVQSRGSSSVHEPNETVHECDNEDHSPLLSDSVQEVMNFRTENGSCEGDQDSDFPFPNERF 317
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737448 321 RFGLIPAGSTDAIVMCTTGARDPVTSALHIILGRKLFLDAMQVVRWKTASTSTIEPYIRYAASFAGYGFYGDVISESEKY 400
Cdd:PLN02204  318 RFGIIPAGSTDAIVMCTTGERDPVTSALHIILGRRVCLDIAQVVRWKTTSTSEIEPYVRYAASFAGYGFYGDVISESEKY 397
                         410       420
                  ....*....|....*....|..
gi 1063737448 401 RWMGPKRYDYVGTKIFLKHRYF 422
Cdd:PLN02204  398 RWMGPKRYDYAGTKVFLKHRSY 419
DAGK_cat pfam00781
Diacylglycerol kinase catalytic domain; Diacylglycerol (DAG) is a second messenger that acts ...
165-251 2.62e-18

Diacylglycerol kinase catalytic domain; Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The catalytic domain is assumed from the finding of bacterial homologs. YegS is the Escherichia coli protein in this family whose crystal structure reveals an active site in the inter-domain cleft formed by four conserved sequence motifs, revealing a novel metal-binding site. The residues of this site are conserved across the family.


Pssm-ID: 425868 [Multi-domain]  Cd Length: 125  Bit Score: 80.71  E-value: 2.62e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737448 165 LLVFVHPKSGKGNGSKVWETVSKIFIRAKVNTKVIVTERAGHAFDVMASIQNKElhtYDGIIAVGGDGFFNEILNGylLS 244
Cdd:pfam00781   2 LLVIVNPKSGGGKGKKLLRKVRPLLNKAGVEVELVLTEGPGDALELAREAAEDG---YDRIVVAGGDGTVNEVLNG--LA 76

                  ....*..
gi 1063737448 245 RLKVPLP 251
Cdd:pfam00781  77 GLATRPP 83
LCB5 COG1597
Phosphatidylglycerol kinase, diacylglycerol kinase family [Lipid transport and metabolism, ...
161-250 7.07e-13

Phosphatidylglycerol kinase, diacylglycerol kinase family [Lipid transport and metabolism, General function prediction only];


Pssm-ID: 441205 [Multi-domain]  Cd Length: 295  Bit Score: 69.11  E-value: 7.07e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737448 161 RPRNLLVFVHPKSGKGNGSKVWETVSKIFIRAKVNTKVIVTERAGHAFDVMASIQNKElhtYDGIIAVGGDGFFNEILNG 240
Cdd:COG1597     1 AMMRALLIVNPASGRGRAARLLERLVAALRAAGLEVEVLETESPGDATELAREAAAEG---ADLVVAAGGDGTVNEVANG 77
                          90
                  ....*....|
gi 1063737448 241 ylLSRLKVPL 250
Cdd:COG1597    78 --LAGTGPPL 85
DAGKc smart00046
Diacylglycerol kinase catalytic domain (presumed); Diacylglycerol (DAG) is a second messenger ...
166-252 2.08e-09

Diacylglycerol kinase catalytic domain (presumed); Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.


Pssm-ID: 214487 [Multi-domain]  Cd Length: 124  Bit Score: 55.38  E-value: 2.08e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737448  166 LVFVHPKSGKGNGSKVWETVSKIFIRAkvntkvIVTERAGHAFDVMASIqNKELHTYDGIIAVGGDGFFNEILNGYLLSR 245
Cdd:smart00046   1 LVFVNPKSGGGKGEKLLRKFRLLLNPR------QVFDLTKKGPAVALVI-FRDVPDFNRVLVCGGDGTVGWVLNALDKRE 73

                   ....*..
gi 1063737448  246 LKVPLPP 252
Cdd:smart00046  74 LPLPEPP 80
 
Name Accession Description Interval E-value
PLN02204 PLN02204
diacylglycerol kinase
1-422 0e+00

diacylglycerol kinase


Pssm-ID: 215126 [Multi-domain]  Cd Length: 601  Bit Score: 848.40  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737448   1 MEEGRDDEYCSFSNSGdRDGGLSGCFFLDHVGQVLLSRNHDGLSWKCLDSSDCEGTTCLGIIICENSETEIKFSDIYAVE 80
Cdd:PLN02204    1 MEEGRDDEHISFSLSG-DRSVLSSCLFLDHVGDVSLTLNSDGLSWKCLDSSDNDGTTCLGIKFCEKSETEIKFSDVYAVE 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737448  81 FVSYGLVHSPKLglRHAKECFRERLLNTQEMYRFTVHGFQSSPKEPCLWNLAAFTFGHMDLQTCQSWMDQLNYSLIKEVE 160
Cdd:PLN02204   80 FINYGLIHSPKL--SHAKGCFRERLSETQEMYRFTVHGFQRSRKEPCLWVLAVYTFGHKDLQTCQSWVDRLNASLNKEVG 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737448 161 RPRNLLVFVHPKSGKGNGSKVWETVSKIFIRAKVNTKVIVTERAGHAFDVMASIQNKELHTYDGIIAVGGDGFFNEILNG 240
Cdd:PLN02204  158 RPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERAGHAFDVMASISNKELKSYDGVIAVGGDGFFNEILNG 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737448 241 YLLSRLKVPLPPSPSDSFNSVQSRGSSSVPEPGDEVHETDQKEHYPLLPDSVQEVMNFRTVNGSCEGIEDPDHPFSSERP 320
Cdd:PLN02204  238 YLLSRLKVPYPPSPSDSVHSVQSRGSSSVHEPNETVHECDNEDHSPLLSDSVQEVMNFRTENGSCEGDQDSDFPFPNERF 317
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737448 321 RFGLIPAGSTDAIVMCTTGARDPVTSALHIILGRKLFLDAMQVVRWKTASTSTIEPYIRYAASFAGYGFYGDVISESEKY 400
Cdd:PLN02204  318 RFGIIPAGSTDAIVMCTTGERDPVTSALHIILGRRVCLDIAQVVRWKTTSTSEIEPYVRYAASFAGYGFYGDVISESEKY 397
                         410       420
                  ....*....|....*....|..
gi 1063737448 401 RWMGPKRYDYVGTKIFLKHRYF 422
Cdd:PLN02204  398 RWMGPKRYDYAGTKVFLKHRSY 419
DAGK_cat pfam00781
Diacylglycerol kinase catalytic domain; Diacylglycerol (DAG) is a second messenger that acts ...
165-251 2.62e-18

Diacylglycerol kinase catalytic domain; Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The catalytic domain is assumed from the finding of bacterial homologs. YegS is the Escherichia coli protein in this family whose crystal structure reveals an active site in the inter-domain cleft formed by four conserved sequence motifs, revealing a novel metal-binding site. The residues of this site are conserved across the family.


Pssm-ID: 425868 [Multi-domain]  Cd Length: 125  Bit Score: 80.71  E-value: 2.62e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737448 165 LLVFVHPKSGKGNGSKVWETVSKIFIRAKVNTKVIVTERAGHAFDVMASIQNKElhtYDGIIAVGGDGFFNEILNGylLS 244
Cdd:pfam00781   2 LLVIVNPKSGGGKGKKLLRKVRPLLNKAGVEVELVLTEGPGDALELAREAAEDG---YDRIVVAGGDGTVNEVLNG--LA 76

                  ....*..
gi 1063737448 245 RLKVPLP 251
Cdd:pfam00781  77 GLATRPP 83
PLN02958 PLN02958
diacylglycerol kinase/D-erythro-sphingosine kinase
134-422 1.18e-14

diacylglycerol kinase/D-erythro-sphingosine kinase


Pssm-ID: 215517 [Multi-domain]  Cd Length: 481  Bit Score: 76.05  E-value: 1.18e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737448 134 FTFGHMDLQTCQSWMDQLNySLIKEVERPRNLLVFVHPKSGKGNGSKVW-ETVSKIFIRAKVNTKVIVTERAGHAFDVMA 212
Cdd:PLN02958   84 FVFEPLSDESRRLWCQKLR-DYLDSLGRPKRLLVFVNPFGGKKSASKIFfDVVKPLLEDADIQLTIQETKYQLHAKEVVR 162
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737448 213 SIqnkELHTYDGIIAVGGDGFFNEILNGyLLSR------LKVPLPPSPSDSFNSVQSRGSSSVPEPgdevhetdqkehyp 286
Cdd:PLN02958  163 TM---DLSKYDGIVCVSGDGILVEVVNG-LLERedwktaIKLPIGMVPAGTGNGMAKSLLDSVGEP-------------- 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737448 287 llpdsvqevmnfrtvngscegiedpdhpfsserprfglipagstdaivmCTtgardPVTSALHIILGRKLFLDAMQVVRW 366
Cdd:PLN02958  225 -------------------------------------------------CS-----ATNAVLAIIRGHKCSLDVATILQG 250
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1063737448 367 KTASTSTIepyiryaasFAGYGFYGDVISESEKYRWMGPKRYDYVGTKIFLKHRYF 422
Cdd:PLN02958  251 ETKFFSVL---------MLAWGLVADIDIESEKYRWMGSARLDFYGLQRILCLRQY 297
LCB5 COG1597
Phosphatidylglycerol kinase, diacylglycerol kinase family [Lipid transport and metabolism, ...
161-250 7.07e-13

Phosphatidylglycerol kinase, diacylglycerol kinase family [Lipid transport and metabolism, General function prediction only];


Pssm-ID: 441205 [Multi-domain]  Cd Length: 295  Bit Score: 69.11  E-value: 7.07e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737448 161 RPRNLLVFVHPKSGKGNGSKVWETVSKIFIRAKVNTKVIVTERAGHAFDVMASIQNKElhtYDGIIAVGGDGFFNEILNG 240
Cdd:COG1597     1 AMMRALLIVNPASGRGRAARLLERLVAALRAAGLEVEVLETESPGDATELAREAAAEG---ADLVVAAGGDGTVNEVANG 77
                          90
                  ....*....|
gi 1063737448 241 ylLSRLKVPL 250
Cdd:COG1597    78 --LAGTGPPL 85
DAGKc smart00046
Diacylglycerol kinase catalytic domain (presumed); Diacylglycerol (DAG) is a second messenger ...
166-252 2.08e-09

Diacylglycerol kinase catalytic domain (presumed); Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.


Pssm-ID: 214487 [Multi-domain]  Cd Length: 124  Bit Score: 55.38  E-value: 2.08e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063737448  166 LVFVHPKSGKGNGSKVWETVSKIFIRAkvntkvIVTERAGHAFDVMASIqNKELHTYDGIIAVGGDGFFNEILNGYLLSR 245
Cdd:smart00046   1 LVFVNPKSGGGKGEKLLRKFRLLLNPR------QVFDLTKKGPAVALVI-FRDVPDFNRVLVCGGDGTVGWVLNALDKRE 73

                   ....*..
gi 1063737448  246 LKVPLPP 252
Cdd:smart00046  74 LPLPEPP 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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