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Conserved domains on  [gi|1063736303|ref|NP_001331471|]
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Duplicated homeodomain-like superfamily protein [Arabidopsis thaliana]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 10446572)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein binds DNA and may function as a transcription factor

CATH:  1.20.58.1880
Gene Ontology:  GO:0006355|GO:0003700|GO:0003677
PubMed:  8882580
SCOP:  4000317

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 252-298 7.26e-05

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


:

Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 39.48  E-value: 7.26e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1063736303 252 WSNGEDIALLNALKAFPKEaamRWEKIAAAVPGKSKAACMKRVTELK 298
Cdd:cd00167     2 WTEEEDELLLEAVKKYGKN---NWEKIAKELPGRTPKQCRERWRNLL 45
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 160-201 9.50e-04

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


:

Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 36.33  E-value: 9.50e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1063736303 160 WTAEEIEILKKQLIKHpagkPGRWETVASAFGGRykTENVIK 201
Cdd:pfam00249   4 WTPEEDELLLEAVEKL----GNRWKKIAKLLPGR--TDNQCK 39
 
Name Accession Description Interval E-value
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 252-298 7.26e-05

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 39.48  E-value: 7.26e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1063736303 252 WSNGEDIALLNALKAFPKEaamRWEKIAAAVPGKSKAACMKRVTELK 298
Cdd:cd00167     2 WTEEEDELLLEAVKKYGKN---NWEKIAKELPGRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
249-299 1.76e-04

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 38.74  E-value: 1.76e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1063736303  249 KEIWSNGEDIALLNALKAFPKEaamRWEKIAAAVPGKSKAACMKRVTELKK 299
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKN---NWEKIAKELPGRTAEQCRERWRNLLK 48
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 160-201 9.50e-04

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 36.33  E-value: 9.50e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1063736303 160 WTAEEIEILKKQLIKHpagkPGRWETVASAFGGRykTENVIK 201
Cdd:pfam00249   4 WTPEEDELLLEAVEKL----GNRWKKIAKLLPGR--TDNQCK 39
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 252-293 1.24e-03

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 35.94  E-value: 1.24e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1063736303 252 WSNGEDIALLNALKAFPKeaamRWEKIAAAVPGKSKAACMKR 293
Cdd:pfam00249   4 WTPEEDELLLEAVEKLGN----RWKKIAKLLPGRTDNQCKNR 41
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 160-193 1.34e-03

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 36.01  E-value: 1.34e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1063736303 160 WTAEEIEILKKQLIKHPagkPGRWETVASAFGGR 193
Cdd:cd00167     2 WTEEEDELLLEAVKKYG---KNNWEKIAKELPGR 32
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
158-193 3.37e-03

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 34.89  E-value: 3.37e-03
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1063736303  158 KDWTAEEIEILKKQLIKHPagkPGRWETVASAFGGR 193
Cdd:smart00717   2 GEWTEEEDELLIELVKKYG---KNNWEKIAKELPGR 34
 
Name Accession Description Interval E-value
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 252-298 7.26e-05

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 39.48  E-value: 7.26e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1063736303 252 WSNGEDIALLNALKAFPKEaamRWEKIAAAVPGKSKAACMKRVTELK 298
Cdd:cd00167     2 WTEEEDELLLEAVKKYGKN---NWEKIAKELPGRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
249-299 1.76e-04

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 38.74  E-value: 1.76e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1063736303  249 KEIWSNGEDIALLNALKAFPKEaamRWEKIAAAVPGKSKAACMKRVTELKK 299
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKN---NWEKIAKELPGRTAEQCRERWRNLLK 48
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 160-201 9.50e-04

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 36.33  E-value: 9.50e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1063736303 160 WTAEEIEILKKQLIKHpagkPGRWETVASAFGGRykTENVIK 201
Cdd:pfam00249   4 WTPEEDELLLEAVEKL----GNRWKKIAKLLPGR--TDNQCK 39
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 252-293 1.24e-03

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 35.94  E-value: 1.24e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1063736303 252 WSNGEDIALLNALKAFPKeaamRWEKIAAAVPGKSKAACMKR 293
Cdd:pfam00249   4 WTPEEDELLLEAVEKLGN----RWKKIAKLLPGRTDNQCKNR 41
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 160-193 1.34e-03

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 36.01  E-value: 1.34e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1063736303 160 WTAEEIEILKKQLIKHPagkPGRWETVASAFGGR 193
Cdd:cd00167     2 WTEEEDELLLEAVKKYG---KNNWEKIAKELPGR 32
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
158-193 3.37e-03

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 34.89  E-value: 3.37e-03
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1063736303  158 KDWTAEEIEILKKQLIKHPagkPGRWETVASAFGGR 193
Cdd:smart00717   2 GEWTEEEDELLIELVKKYG---KNNWEKIAKELPGR 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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