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Conserved domains on  [gi|1063736775|ref|NP_001330162|]
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Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

Protein Classification

phototropic-responsive NPH3 family protein( domain architecture ID 13033814)

phototropic-responsive NPH3 family protein is a BTB (BR-C, ttk and bab)/POZ (Pox virus and Zinc finger) and NPH3 domain-containing protein that may act as a substrate-specific adaptor of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NPH3 pfam03000
NPH3 family; Phototropism of Arabidopsis thaliana seedlings in response to a blue light source ...
 312-561 1.15e-96

NPH3 family; Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay.


:

Pssm-ID: 460777  Cd Length: 218  Bit Score: 296.32  E-value: 1.15e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736775 312 DWWTEDISDLDLDLFRCVITAARSTFtLPPQLIGEALHVYTCRWLPYFKSNSHSGFSvkENEAALERHRRLVNTVVNMIP 391
Cdd:pfam03000   1 DWWFEDLSELSIDLFKRVISAMKSKG-MKPEVIGEALMHYAKKWLPGLSRSSSSSAS--RSEDDNSKQRELLETIVSLLP 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736775 392 ADKGSVSEGFLLRLVSIASYVRASLTTKTELIRKSSLQLEEATLEDLLLPSHSSSHlHRYDTDLvatvlesflmlwrrqs 471
Cdd:pfam03000  78 SEKGSVSCSFLLGLLRTAIILGASEACREELERRIGLQLEQATLDDLLIPSYSGEE-TLYDVDL---------------- 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736775 472 sahlssnntqllhsirKVAKLIDSYLQAVAQDVHMPVSKFVSLSEAVPDIARQSHDRLYKAINIFLKVHPEISKEEKKRL 551
Cdd:pfam03000 141 ----------------KVAKLVDGYLAEIASDPNLKLSKFIALAEALPDSARPTHDGLYRAIDIYLKAHPGLSESERKRL 204

                         250
                  ....*....|
gi 1063736775 552 CRSLDCQKLS 561
Cdd:pfam03000 205 CRLMDCQKLS 214
BTB_POZ_NPY3-like cd18312
BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in ...
 132-236 1.80e-49

BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Arabidopsis thaliana protein naked pins in YUC mutants 3 (NPY3), Root phototropism protein 3 (RPT3), and similar proteins; NPY3 may play an essential role in auxin-mediated organogenesis and in root gravitropic responses in Arabidopsis. RPT3 is a signal transducer of the phototropic response and photo-induced movements. It is necessary for root and hypocotyl phototropisms, but not for the regulation of stomata opening. Proteins in this subfamily contain an N-terminal BTB domain. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


:

Pssm-ID: 349621 [Multi-domain]  Cd Length: 105  Bit Score: 167.89  E-value: 1.80e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736775 132 SRILITDTPNDLVIRINNTTYHLHRSCLVPKCGLLRRLCTDLEESDTVTIELNDIPGGADAFELCAKFCYDITINLSAHN 211
Cdd:cd18312     1 SWFRDTGEPSDITVRVGNTTFHLHKFPLCSKSGYFKRLASSSSESDPSEIELNDFPGGAEAFELVAKFCYGMPINLTATN 80

                          90       100
                  ....*....|....*....|....*
gi 1063736775 212 LVNALCASKFLRMSDSVDKGNLLPK 236
Cdd:cd18312    81 VVGLRCAAEYLEMTESGNLGNLIDK 105
 
Name Accession Description Interval E-value
NPH3 pfam03000
NPH3 family; Phototropism of Arabidopsis thaliana seedlings in response to a blue light source ...
 312-561 1.15e-96

NPH3 family; Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay.


Pssm-ID: 460777  Cd Length: 218  Bit Score: 296.32  E-value: 1.15e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736775 312 DWWTEDISDLDLDLFRCVITAARSTFtLPPQLIGEALHVYTCRWLPYFKSNSHSGFSvkENEAALERHRRLVNTVVNMIP 391
Cdd:pfam03000   1 DWWFEDLSELSIDLFKRVISAMKSKG-MKPEVIGEALMHYAKKWLPGLSRSSSSSAS--RSEDDNSKQRELLETIVSLLP 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736775 392 ADKGSVSEGFLLRLVSIASYVRASLTTKTELIRKSSLQLEEATLEDLLLPSHSSSHlHRYDTDLvatvlesflmlwrrqs 471
Cdd:pfam03000  78 SEKGSVSCSFLLGLLRTAIILGASEACREELERRIGLQLEQATLDDLLIPSYSGEE-TLYDVDL---------------- 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736775 472 sahlssnntqllhsirKVAKLIDSYLQAVAQDVHMPVSKFVSLSEAVPDIARQSHDRLYKAINIFLKVHPEISKEEKKRL 551
Cdd:pfam03000 141 ----------------KVAKLVDGYLAEIASDPNLKLSKFIALAEALPDSARPTHDGLYRAIDIYLKAHPGLSESERKRL 204

                         250
                  ....*....|
gi 1063736775 552 CRSLDCQKLS 561
Cdd:pfam03000 205 CRLMDCQKLS 214
BTB_POZ_NPY3-like cd18312
BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in ...
 132-236 1.80e-49

BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Arabidopsis thaliana protein naked pins in YUC mutants 3 (NPY3), Root phototropism protein 3 (RPT3), and similar proteins; NPY3 may play an essential role in auxin-mediated organogenesis and in root gravitropic responses in Arabidopsis. RPT3 is a signal transducer of the phototropic response and photo-induced movements. It is necessary for root and hypocotyl phototropisms, but not for the regulation of stomata opening. Proteins in this subfamily contain an N-terminal BTB domain. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349621 [Multi-domain]  Cd Length: 105  Bit Score: 167.89  E-value: 1.80e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736775 132 SRILITDTPNDLVIRINNTTYHLHRSCLVPKCGLLRRLCTDLEESDTVTIELNDIPGGADAFELCAKFCYDITINLSAHN 211
Cdd:cd18312     1 SWFRDTGEPSDITVRVGNTTFHLHKFPLCSKSGYFKRLASSSSESDPSEIELNDFPGGAEAFELVAKFCYGMPINLTATN 80

                          90       100
                  ....*....|....*....|....*
gi 1063736775 212 LVNALCASKFLRMSDSVDKGNLLPK 236
Cdd:cd18312    81 VVGLRCAAEYLEMTESGNLGNLIDK 105
BTB smart00225
Broad-Complex, Tramtrack and Bric a brac; Domain in Broad-Complex, Tramtrack and Bric a brac. ...
 142-230 9.89e-04

Broad-Complex, Tramtrack and Bric a brac; Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.


Pssm-ID: 197585 [Multi-domain]  Cd Length: 97  Bit Score: 38.83  E-value: 9.89e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736775  142 DLVIRINNTTYHLHRSCLVPKCGLLR-RLCTDLEESDTVTIELNDIPggADAFELCAKFCYDITINLSAHNLVNALCASK 220
Cdd:smart00225   1 DVTLVVGGKKFHAHKAVLAAHSPYFKaLFSSDFKESDKSEIYLDDVS--PEDFRALLNFLYTGKLDLPEENVEELLELAD 78

                           90
                   ....*....|
gi 1063736775  221 FLRMSDSVDK 230
Cdd:smart00225  79 YLQIPGLVEL 88
 
Name Accession Description Interval E-value
NPH3 pfam03000
NPH3 family; Phototropism of Arabidopsis thaliana seedlings in response to a blue light source ...
 312-561 1.15e-96

NPH3 family; Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay.


Pssm-ID: 460777  Cd Length: 218  Bit Score: 296.32  E-value: 1.15e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736775 312 DWWTEDISDLDLDLFRCVITAARSTFtLPPQLIGEALHVYTCRWLPYFKSNSHSGFSvkENEAALERHRRLVNTVVNMIP 391
Cdd:pfam03000   1 DWWFEDLSELSIDLFKRVISAMKSKG-MKPEVIGEALMHYAKKWLPGLSRSSSSSAS--RSEDDNSKQRELLETIVSLLP 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736775 392 ADKGSVSEGFLLRLVSIASYVRASLTTKTELIRKSSLQLEEATLEDLLLPSHSSSHlHRYDTDLvatvlesflmlwrrqs 471
Cdd:pfam03000  78 SEKGSVSCSFLLGLLRTAIILGASEACREELERRIGLQLEQATLDDLLIPSYSGEE-TLYDVDL---------------- 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736775 472 sahlssnntqllhsirKVAKLIDSYLQAVAQDVHMPVSKFVSLSEAVPDIARQSHDRLYKAINIFLKVHPEISKEEKKRL 551
Cdd:pfam03000 141 ----------------KVAKLVDGYLAEIASDPNLKLSKFIALAEALPDSARPTHDGLYRAIDIYLKAHPGLSESERKRL 204

                         250
                  ....*....|
gi 1063736775 552 CRSLDCQKLS 561
Cdd:pfam03000 205 CRLMDCQKLS 214
BTB_POZ_NPY3-like cd18312
BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in ...
 132-236 1.80e-49

BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Arabidopsis thaliana protein naked pins in YUC mutants 3 (NPY3), Root phototropism protein 3 (RPT3), and similar proteins; NPY3 may play an essential role in auxin-mediated organogenesis and in root gravitropic responses in Arabidopsis. RPT3 is a signal transducer of the phototropic response and photo-induced movements. It is necessary for root and hypocotyl phototropisms, but not for the regulation of stomata opening. Proteins in this subfamily contain an N-terminal BTB domain. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349621 [Multi-domain]  Cd Length: 105  Bit Score: 167.89  E-value: 1.80e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736775 132 SRILITDTPNDLVIRINNTTYHLHRSCLVPKCGLLRRLCTDLEESDTVTIELNDIPGGADAFELCAKFCYDITINLSAHN 211
Cdd:cd18312     1 SWFRDTGEPSDITVRVGNTTFHLHKFPLCSKSGYFKRLASSSSESDPSEIELNDFPGGAEAFELVAKFCYGMPINLTATN 80

                          90       100
                  ....*....|....*....|....*
gi 1063736775 212 LVNALCASKFLRMSDSVDKGNLLPK 236
Cdd:cd18312    81 VVGLRCAAEYLEMTESGNLGNLIDK 105
BTB_POZ_ZBTB_KLHL-like cd18186
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in ...
 142-222 8.54e-07

BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing (ZBTB) proteins, Kelch-like (KLHL) proteins, and similar proteins; This family includes a variety of BTB/POZ domain-containing proteins, such as zinc finger and BTB domain-containing (ZBTB) proteins and Kelch-like (KLHL) proteins. They have diverse functions, such as transcriptional regulation, chromatin remodeling, protein degradation and cytoskeletal regulation. Many BTB/POZ proteins contain one or two additional domains, such as kelch repeats, zinc-finger domains, FYVE (Fab1, YOTB, Vac1, and EEA1) fingers, or ankyrin repeats. These special additional domains or interaction partners provide unique characteristics and functions to BTB/POZ proteins. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349497 [Multi-domain]  Cd Length: 82  Bit Score: 47.16  E-value: 8.54e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736775 142 DLVIRINNTTYHLHRSCLVPKCGLLRR-LCTDLEESDTVTIELNDIPggADAFELCAKFCYDITINLSAHNLVNALCASK 220
Cdd:cd18186     3 DVTLVVGGREFPAHRAVLAARSPYFRAmFSSGMKESSSSEIELDDVS--PEAFEALLDYIYTGELELSEENVEELLAAAD 80


                  ..
gi 1063736775 221 FL 222
Cdd:cd18186    81 KL 82
BTB smart00225
Broad-Complex, Tramtrack and Bric a brac; Domain in Broad-Complex, Tramtrack and Bric a brac. ...
 142-230 9.89e-04

Broad-Complex, Tramtrack and Bric a brac; Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.


Pssm-ID: 197585 [Multi-domain]  Cd Length: 97  Bit Score: 38.83  E-value: 9.89e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736775  142 DLVIRINNTTYHLHRSCLVPKCGLLR-RLCTDLEESDTVTIELNDIPggADAFELCAKFCYDITINLSAHNLVNALCASK 220
Cdd:smart00225   1 DVTLVVGGKKFHAHKAVLAAHSPYFKaLFSSDFKESDKSEIYLDDVS--PEDFRALLNFLYTGKLDLPEENVEELLELAD 78

                           90
                   ....*....|
gi 1063736775  221 FLRMSDSVDK 230
Cdd:smart00225  79 YLQIPGLVEL 88
BTB_POZ_BTBD17 cd18292
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in ...
 142-221 4.95e-03

BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in BTB/POZ domain-containing protein 17 (BTBD17); BTBD17, also called galectin-3-binding protein-like, is a BTB domain-containing protein. Its function remains unclear. It may be associated with hepatocellular carcinoma. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349601 [Multi-domain]  Cd Length: 114  Bit Score: 37.27  E-value: 4.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736775 142 DLVIRINNTTYHLHRSCLVPKCGLLRRLCT--DLEESDTVTIELNDIPGGADAFELCAKFCYDITINLSAHNLVNALC-A 218
Cdd:cd18292    19 DIVLRVGGKVFHAHRLILAKSSDVFRVMLSndWWSESKQSEIELVEDPECAAVFEKFLRYLYTGQISVNLETALPLLMlA 98


                  ...
gi 1063736775 219 SKF 221
Cdd:cd18292    99 DKY 101
BTB_POZ_ZBTB37 cd18222
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in ...
 142-230 5.88e-03

BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 37 (ZBTB37); ZBTB37 may be involved in transcriptional regulation. It is differentially expressed in aryl hydrocarbon receptor (AhR)-KO mice compared with WT mice, and may potentially contribute to the aging phenotype of AhR-KO mice. It contains a BTB/POZ domain, a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349531 [Multi-domain]  Cd Length: 123  Bit Score: 37.33  E-value: 5.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736775 142 DLVIRINNTTYHLHRSCLVPKCGLLRRLCTdLEESDTVTIELNDIPGgadAFELCAKFCYDITINLSAHNLVNALCASKF 221
Cdd:cd18222    27 DIVVNVQGQSFRAHKVVLAASSPYFRDHMS-LNEMSTVSISVIKNPT---VFEQLLSFCYTGRICLQLADIISYLTAASF 102


                  ....*....
gi 1063736775 222 LRMSDSVDK 230
Cdd:cd18222   103 LQMQHIIDK 111
BTB_POZ_ZBTB8A_BOZF1 cd18329
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in ...
 142-226 6.38e-03

BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 8A (ZBTB8A); ZBTB8A, also called BTB/POZ and zinc-finger domain-containing factor or BTB/POZ and zinc-finger domains factor on chromosome 1 (BOZ-F1), is a novel proto-oncoprotein that stimulates cell proliferation. It binds to all the proximal GC boxes to repress transcription, and it inhibits p53 acetylation without affecting p53 stability. It may be involved in gastric adenocarcinoma cell differentiation, cancer invasion, and metastasis. ZBTB8A contains a BTB/POZ domain, a common protein-protein interaction motif of about 100 amino acids.


Pssm-ID: 349638 [Multi-domain]  Cd Length: 116  Bit Score: 37.11  E-value: 6.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736775 142 DLVIRINNTTYHLHRSCLVPKCGLLRRL----CTDLEESDTVTIELNDipggADAFELCAKFCYDITINLSAHNLVNALC 217
Cdd:cd18329    23 DCSILVEGQVFKAHRNVLFASSGYFKMLlsqnAKETGQPTVATFDVFS----PDTFTIILDFVYSGKLSLTSQNVIEVMS 98


                  ....*....
gi 1063736775 218 ASKFLRMSD 226
Cdd:cd18329    99 AASYLQMTD 107
BTB_POZ cd01165
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain ...
 144-222 6.51e-03

BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily; Proteins in this superfamily are characterized by the presence of a common protein-protein interaction motif of about 100 amino acids, known as the BTB/POZ domain. Members include transcription factors, oncogenic proteins, ion channel proteins, and potassium channel tetramerization domain (KCTD) proteins. They have been identified in poxviruses and many eukaryotes, and have diverse functions, such as transcriptional regulation, chromatin remodeling, protein degradation and cytoskeletal regulation. Many BTB/POZ proteins contain one or two additional domains, such as kelch repeats, zinc-finger domains, FYVE (Fab1, YOTB, Vac1, and EEA1) fingers, or ankyrin repeats, among others. These special additional domains or interaction partners provide unique characteristics and functions to BTB/POZ proteins. In ion channel proteins and KCTD proteins, the BTB/POZ domain is also called the tetramerization (T1) domain.


Pssm-ID: 349496 [Multi-domain]  Cd Length: 79  Bit Score: 36.11  E-value: 6.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736775 144 VIRINNTTYHLHRSCLVPKCGLLRRLCT-DLEESDTVTIELNDIpgGADAFELCAKFCYDITINLSAHNLVNALCASKFL 222
Cdd:cd01165     2 VLVVEGEKFHVNKELLAQSSEYFRALFRgGFRESGQAEINLRDI--SPEDFRALLEFLYGGKRDLDASNLLELLEAANFL 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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