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Conserved domains on  [gi|1063722614|ref|NP_001329445|]
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FRS (FAR1 Related Sequences) transcription factor family [Arabidopsis thaliana]

Protein Classification

FHY3/FAR1 family protein( domain architecture ID 1001808)

FHY3/FAR1 family protein similar to FAR-RED ELONGATED HYPOCOTYL 3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) which are transcription factors that play multiple roles in a wide range of cellular processes and are crucial for plant growth and development, and to transposases of the Mutator-like element (MULE)

Gene Ontology:  GO:0003677
PubMed:  15591448

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
FHY3 super family cl31971
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 10-826 0e+00

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


The actual alignment was detected with superfamily member PLN03097:

Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 1078.86  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614  10 DAGDDHMVDIVVEPHSNrDIGIVDEFNiGGDVGFSGDLDLEPRNGIDFDTHEAAYIFYQEYAKSMGFTTSIKNSRRSKKT 89
Cdd:PLN03097   35 DMEIGNVVDVAEEVLSI-DGGDMNSPT-GELVEFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTS 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614  90 KDFIDAKFACSRYGVT---------PESESSGSSSRRSTVK----KTDCKASMHVKRRPDGKWIIHEFVKDHNHELLPAl 156
Cdd:PLN03097  113 REFIDAKFACSRYGTKreydksfnrPRARQTKQDPENGTGRrscaKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPA- 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614 157 ayhfriqrnvklaeknnidilHAVSERTKKMYVEMSRQSGGYKNIGSLlQTDVSSQVDKGRYLALEEGDSQVLLEYFKRI 236
Cdd:PLN03097  192 ---------------------QAVSEQTRKMYAAMARQFAEYKNVVGL-KNDSKSSFDKGRNLGLEAGDTKILLDFFTQM 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614 237 KKENPKFFYAIDLNEDQRLRNLFWADAKSRDDYLSFNDVVSFDTTYVKFNDKLPLALFIGVNHHSQPMLLGCALVADESM 316
Cdd:PLN03097  250 QNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESA 329

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614 317 ETFVWLIKTWLRAMGGRAPKVILTDQDKFLMSAVSELLPNTRHCFALWHVLEKIPEYFSHVMKRHENFLLKFNKCIFRSW 396
Cdd:PLN03097  330 ATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSW 409

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614 397 TDDEFDMRWWKMVSQFGLENDEWLLWLHEHRQKWVPTFMSDVFLAGMSTSQRSESVNSFFDKYIHKKITLKEFLRQYGVI 476
Cdd:PLN03097  410 TEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETI 489

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614 477 LQNRYEEESVADFDTCHKQPALKSPSPWEKQMATTYTHTIFKKFQVEVLGVVACHPRKEKEDENMATFRVQDCEKDDDFL 556
Cdd:PLN03097  490 LQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFT 569

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614 557 VTWSKTKSELCCFCRMFEYKGFLCRHALMILQMCGFASIPPQYILKRWTKDAKSGVLAGEGADQIQTRVQRYNDLCSRAT 636
Cdd:PLN03097  570 VTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWTKDAKSRHLLGEESEQVQSRVQRYNDLCQRAL 649

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614 637 ELSEEGCVSEENYNIALRTLVETLKNCVDMNNARNNITESNSqlnNGTH-----EEENQVMAGVKATKKKTVYRKRKGQQ 711
Cdd:PLN03097  650 KLSEEASLSQESYNIAFRALEEAFGNCISMNNSNKSLVEAGT---SPTHgllciEDDNQSRSMTKTNKKKNPTKKRKVNS 726

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614 712 EASQM-LESQQSLQPMETISSEAMDMNGYYGPQQNVQGL--LNLMEPPHEGYYVDQRTIQGLGQLNSIAPAQDSFFTNQQ 788
Cdd:PLN03097  727 EQEVTtVAAQDSLQQMDKLSSRAVALESYYGTQQSVQGMvqLNLMAPTRDNYYGNQQTIQGLGQLNSIAPSHDGYYGTQQ 806

                         810       820       830       840
                  ....*....|....*....|....*....|....*....|
gi 1063722614 789 AMSGMvGQID-FRPPPNFTYTLQEE-HLSSAQLPGSSSRQ 826
Cdd:PLN03097  807 SIHGL-GQMDfFRTPAGFSYDIRDDpNVRTAQLHDDASRH 845
 
Name Accession Description Interval E-value
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 10-826 0e+00

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 1078.86  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614  10 DAGDDHMVDIVVEPHSNrDIGIVDEFNiGGDVGFSGDLDLEPRNGIDFDTHEAAYIFYQEYAKSMGFTTSIKNSRRSKKT 89
Cdd:PLN03097   35 DMEIGNVVDVAEEVLSI-DGGDMNSPT-GELVEFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTS 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614  90 KDFIDAKFACSRYGVT---------PESESSGSSSRRSTVK----KTDCKASMHVKRRPDGKWIIHEFVKDHNHELLPAl 156
Cdd:PLN03097  113 REFIDAKFACSRYGTKreydksfnrPRARQTKQDPENGTGRrscaKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPA- 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614 157 ayhfriqrnvklaeknnidilHAVSERTKKMYVEMSRQSGGYKNIGSLlQTDVSSQVDKGRYLALEEGDSQVLLEYFKRI 236
Cdd:PLN03097  192 ---------------------QAVSEQTRKMYAAMARQFAEYKNVVGL-KNDSKSSFDKGRNLGLEAGDTKILLDFFTQM 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614 237 KKENPKFFYAIDLNEDQRLRNLFWADAKSRDDYLSFNDVVSFDTTYVKFNDKLPLALFIGVNHHSQPMLLGCALVADESM 316
Cdd:PLN03097  250 QNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESA 329

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614 317 ETFVWLIKTWLRAMGGRAPKVILTDQDKFLMSAVSELLPNTRHCFALWHVLEKIPEYFSHVMKRHENFLLKFNKCIFRSW 396
Cdd:PLN03097  330 ATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSW 409

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614 397 TDDEFDMRWWKMVSQFGLENDEWLLWLHEHRQKWVPTFMSDVFLAGMSTSQRSESVNSFFDKYIHKKITLKEFLRQYGVI 476
Cdd:PLN03097  410 TEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETI 489

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614 477 LQNRYEEESVADFDTCHKQPALKSPSPWEKQMATTYTHTIFKKFQVEVLGVVACHPRKEKEDENMATFRVQDCEKDDDFL 556
Cdd:PLN03097  490 LQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFT 569

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614 557 VTWSKTKSELCCFCRMFEYKGFLCRHALMILQMCGFASIPPQYILKRWTKDAKSGVLAGEGADQIQTRVQRYNDLCSRAT 636
Cdd:PLN03097  570 VTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWTKDAKSRHLLGEESEQVQSRVQRYNDLCQRAL 649

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614 637 ELSEEGCVSEENYNIALRTLVETLKNCVDMNNARNNITESNSqlnNGTH-----EEENQVMAGVKATKKKTVYRKRKGQQ 711
Cdd:PLN03097  650 KLSEEASLSQESYNIAFRALEEAFGNCISMNNSNKSLVEAGT---SPTHgllciEDDNQSRSMTKTNKKKNPTKKRKVNS 726

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614 712 EASQM-LESQQSLQPMETISSEAMDMNGYYGPQQNVQGL--LNLMEPPHEGYYVDQRTIQGLGQLNSIAPAQDSFFTNQQ 788
Cdd:PLN03097  727 EQEVTtVAAQDSLQQMDKLSSRAVALESYYGTQQSVQGMvqLNLMAPTRDNYYGNQQTIQGLGQLNSIAPSHDGYYGTQQ 806

                         810       820       830       840
                  ....*....|....*....|....*....|....*....|
gi 1063722614 789 AMSGMvGQID-FRPPPNFTYTLQEE-HLSSAQLPGSSSRQ 826
Cdd:PLN03097  807 SIHGL-GQMDfFRTPAGFSYDIRDDpNVRTAQLHDDASRH 845
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 66-154 4.86e-35

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 128.22  E-value: 4.86e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614  66 FYQEYAKSMGFTTSIKNSRRSKKTKDFIDAKFACSRYGVTPESESSGSSSRRSTVKKTDCKASMHVKRRPDGKWIIHEFV 145
Cdd:pfam03101   2 FYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKQRTGEARRPRPSTRTGCKAMIVVKRESDGKWVVTQFV 81


                  ....*....
gi 1063722614 146 KDHNHELLP 154
Cdd:pfam03101  82 KEHNHELLP 90
ZnF_PMZ smart00575
plant mutator transposase zinc finger;
567-592 2.99e-08

plant mutator transposase zinc finger;


Pssm-ID: 128845  Cd Length: 28  Bit Score: 49.86  E-value: 2.99e-08
                           10        20
                   ....*....|....*....|....*.
gi 1063722614  567 CCFCRMFEYKGFLCRHALMILQMCGF 592
Cdd:smart00575   2 TCSCRKFQLSGIPCRHALAAAIHIGL 27
 
Name Accession Description Interval E-value
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 10-826 0e+00

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 1078.86  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614  10 DAGDDHMVDIVVEPHSNrDIGIVDEFNiGGDVGFSGDLDLEPRNGIDFDTHEAAYIFYQEYAKSMGFTTSIKNSRRSKKT 89
Cdd:PLN03097   35 DMEIGNVVDVAEEVLSI-DGGDMNSPT-GELVEFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTS 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614  90 KDFIDAKFACSRYGVT---------PESESSGSSSRRSTVK----KTDCKASMHVKRRPDGKWIIHEFVKDHNHELLPAl 156
Cdd:PLN03097  113 REFIDAKFACSRYGTKreydksfnrPRARQTKQDPENGTGRrscaKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPA- 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614 157 ayhfriqrnvklaeknnidilHAVSERTKKMYVEMSRQSGGYKNIGSLlQTDVSSQVDKGRYLALEEGDSQVLLEYFKRI 236
Cdd:PLN03097  192 ---------------------QAVSEQTRKMYAAMARQFAEYKNVVGL-KNDSKSSFDKGRNLGLEAGDTKILLDFFTQM 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614 237 KKENPKFFYAIDLNEDQRLRNLFWADAKSRDDYLSFNDVVSFDTTYVKFNDKLPLALFIGVNHHSQPMLLGCALVADESM 316
Cdd:PLN03097  250 QNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESA 329

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614 317 ETFVWLIKTWLRAMGGRAPKVILTDQDKFLMSAVSELLPNTRHCFALWHVLEKIPEYFSHVMKRHENFLLKFNKCIFRSW 396
Cdd:PLN03097  330 ATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSW 409

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614 397 TDDEFDMRWWKMVSQFGLENDEWLLWLHEHRQKWVPTFMSDVFLAGMSTSQRSESVNSFFDKYIHKKITLKEFLRQYGVI 476
Cdd:PLN03097  410 TEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETI 489

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614 477 LQNRYEEESVADFDTCHKQPALKSPSPWEKQMATTYTHTIFKKFQVEVLGVVACHPRKEKEDENMATFRVQDCEKDDDFL 556
Cdd:PLN03097  490 LQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFT 569

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614 557 VTWSKTKSELCCFCRMFEYKGFLCRHALMILQMCGFASIPPQYILKRWTKDAKSGVLAGEGADQIQTRVQRYNDLCSRAT 636
Cdd:PLN03097  570 VTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWTKDAKSRHLLGEESEQVQSRVQRYNDLCQRAL 649

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614 637 ELSEEGCVSEENYNIALRTLVETLKNCVDMNNARNNITESNSqlnNGTH-----EEENQVMAGVKATKKKTVYRKRKGQQ 711
Cdd:PLN03097  650 KLSEEASLSQESYNIAFRALEEAFGNCISMNNSNKSLVEAGT---SPTHgllciEDDNQSRSMTKTNKKKNPTKKRKVNS 726

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614 712 EASQM-LESQQSLQPMETISSEAMDMNGYYGPQQNVQGL--LNLMEPPHEGYYVDQRTIQGLGQLNSIAPAQDSFFTNQQ 788
Cdd:PLN03097  727 EQEVTtVAAQDSLQQMDKLSSRAVALESYYGTQQSVQGMvqLNLMAPTRDNYYGNQQTIQGLGQLNSIAPSHDGYYGTQQ 806

                         810       820       830       840
                  ....*....|....*....|....*....|....*....|
gi 1063722614 789 AMSGMvGQID-FRPPPNFTYTLQEE-HLSSAQLPGSSSRQ 826
Cdd:PLN03097  807 SIHGL-GQMDfFRTPAGFSYDIRDDpNVRTAQLHDDASRH 845
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 66-154 4.86e-35

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 128.22  E-value: 4.86e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614  66 FYQEYAKSMGFTTSIKNSRRSKKTKDFIDAKFACSRYGVTPESESSGSSSRRSTVKKTDCKASMHVKRRPDGKWIIHEFV 145
Cdd:pfam03101   2 FYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKQRTGEARRPRPSTRTGCKAMIVVKRESDGKWVVTQFV 81


                  ....*....
gi 1063722614 146 KDHNHELLP 154
Cdd:pfam03101  82 KEHNHELLP 90
MULE pfam10551
MULE transposase domain; This domain was identified by Babu and colleagues.
 275-369 6.66e-26

MULE transposase domain; This domain was identified by Babu and colleagues.


Pssm-ID: 463145 [Multi-domain]  Cd Length: 98  Bit Score: 102.34  E-value: 6.66e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063722614 275 VVSFDTTYVKFNDKLPLALFIGVNHHSQPMLLGCALVADESMETFVWL---IKTWLRAMGGRAPKVILTDQDKFLMSAVS 351
Cdd:pfam10551   1 VLLIDGTYKTNKYKMPLFTAVGVDHHGQSFPIAFGLVSNETEESFTWLfdqLIAFRECMSGLSPQVIITDRDKALKNAIN 80

                          90
                  ....*....|....*...
gi 1063722614 352 ELLPNTRHCFALWHVLEK 369
Cdd:pfam10551  81 LVFPEAQHRLCIFHINKN 98
ZnF_PMZ smart00575
plant mutator transposase zinc finger;
567-592 2.99e-08

plant mutator transposase zinc finger;


Pssm-ID: 128845  Cd Length: 28  Bit Score: 49.86  E-value: 2.99e-08
                           10        20
                   ....*....|....*....|....*.
gi 1063722614  567 CCFCRMFEYKGFLCRHALMILQMCGF 592
Cdd:smart00575   2 TCSCRKFQLSGIPCRHALAAAIHIGL 27
SWIM pfam04434
SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is ...
 555-591 1.68e-07

SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organized into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts.


Pssm-ID: 309540  Cd Length: 38  Bit Score: 48.18  E-value: 1.68e-07
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1063722614 555 FLVTWSKTKSELC-CFCRMFEYKGFLCRHALMILQMCG 591
Cdd:pfam04434   1 YRVQLDLDGLEKAsCSCPDFQLNGIPCKHALAVLLALG 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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