|
Name |
Accession |
Description |
Interval |
E-value |
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
441-632 |
1.09e-135 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 395.06 E-value: 1.09e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 441 KSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAG 520
Cdd:cd17876 13 KSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARDQGFDVVLIDTAG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 521 RMQDNEPLMRALSKLINLNQPDLVLFVGEALVGNDAVDQLSKFNQKLSDLSTSGNPRLIDGILLTKFDTIDDKVGAALSM 600
Cdd:cd17876 93 RMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFNQALADYSPSDNPRLIDGIVLTKFDTIDDKVGAALSM 172
|
170 180 190
....*....|....*....|....*....|..
gi 1063725895 601 VYISGSPVMFVGCGQSYTDLKKLNVKAIVKTL 632
Cdd:cd17876 173 VYATGQPIVFVGTGQTYTDLKKLNVKAVVNSL 204
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
299-633 |
5.73e-76 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 246.04 E-value: 5.73e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 299 KEEVFSSDSESEDDDEPGSDEKPAQAKKKGwfSSVFQSITGKAnLERTDLGPALKALKERLMTKNVAEEIAEKLCESVEA 378
Cdd:PRK14974 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKEK--PGFFDKAKITE-IKEKDIEDLLEELELELLESDVALEVAEEILESLKE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 379 SLEGKKLSSFTRISSTVQAAMEDALVRILTPRRSIDILRDVhaaKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHKVS 458
Cdd:PRK14974 94 KLVGKKVKRGEDVEEIVKNALKEALLEVLSVGDLFDLIEEI---KSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFS 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 459 VMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLINL 538
Cdd:PRK14974 171 VVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRV 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 539 NQPDLVLFVGEALVGNDAVDQLSKFNQKLSdlstsgnprlIDGILLTKFDTiDDKVGAALSMVYISGSPVMFVGCGQSYT 618
Cdd:PRK14974 251 TKPDLVIFVGDALAGNDAVEQAREFNEAVG----------IDGVILTKVDA-DAKGGAALSIAYVIGKPILFLGVGQGYD 319
|
330
....*....|....*
gi 1063725895 619 DLKKLNVKAIVKTLL 633
Cdd:PRK14974 320 DLIPFDPDWFVDKLL 334
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
441-634 |
2.02e-70 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 226.14 E-value: 2.02e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 441 KSTNLAKVAYWLQ-QHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTA 519
Cdd:smart00962 14 KTTTIAKLAARLKlKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELAKARGYDVVLIDTA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 520 GRMQDNEPLMRALSKLINLNQPDLVLFVGEALVGNDAVDQLSKFNQKLSdlstsgnprlIDGILLTKFDtIDDKVGAALS 599
Cdd:smart00962 94 GRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALG----------LTGIILTKLD-GTAKGGAALS 162
|
170 180 190
....*....|....*....|....*....|....*
gi 1063725895 600 MVYISGSPVMFVGCGQSYTDLKKLNVKAIVKTLLK 634
Cdd:smart00962 163 IAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP-alpha_N |
pfam04086 |
Signal recognition particle, alpha subunit, N-terminal; SRP is a complex of six distinct ... |
29-301 |
5.51e-70 |
|
Signal recognition particle, alpha subunit, N-terminal; SRP is a complex of six distinct polypeptides and a 7S RNA that is essential for transferring nascent polypeptide chains that are destined for export from the cell to the translocation apparatus of the endoplasmic reticulum (ER) membrane. SRP binds hydrophobic signal sequences as they emerge from the ribosome, and arrests translation.
Pssm-ID: 461165 Cd Length: 281 Bit Score: 228.45 E-value: 5.51e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 29 PIDTLIRSCLLEERSGAVSFNYDApgaaYTLKWTFHNDLGLVFVAVYQRILHLLYVDDLLSMVKQSFSEVYDPKRMAY-- 106
Cdd:pfam04086 1 PINALIRDVLLEERSGNPSFKHDS----YTLKWTLDNELGLVFVAVYQKILHLSYVDKLLDNVKTIFVDLYKDQLKPYtt 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 107 ----DDFDETFRQLRIEAEARAEELRKTKQVGKPVTSVKKQG------QVSKPGLEGGNKRVSSEGGSKKDDGDGGNKAK 176
Cdd:pfam04086 77 lvecPDFDEYFDQLLREAEESAAAQAKAPKAMKTFEESKKSQktvksmIEDRPPPPPGKKKKGAKKEAPAAGDAGSDDST 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 177 VSTLTNGHSNGNhqmeddsqetndlANGKENTSSNVAVDLSKLQKLRSKGVRGRGGVRKTDSiGNKSSKVAEPAKKAtKK 256
Cdd:pfam04086 157 PSATPDTSRPST-------------PLLTAKGAGPGAGDVSRRNRKALNKKRSGAGASSGDE-SSKSPKPPKKKKKG-KK 221
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1063725895 257 NRVWDD--AAPKQSKLDFTDSIDENGNNDH----VDIVAADQGESMMDKEE 301
Cdd:pfam04086 222 ARVWDAdgSADEADQLDYSAPADENGGEAEgesaVEAVDQSTWGSKTGKGQ 272
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
441-629 |
9.31e-59 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 195.45 E-value: 9.31e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 441 KSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAG 520
Cdd:pfam00448 13 KTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKAENYDVVLVDTAG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 521 RMQDNEPLMRALSKLINLNQPDLVLFVGEALVGNDAVDQLSKFNQKLSdlstsgnprlIDGILLTKFDTiDDKVGAALSM 600
Cdd:pfam00448 93 RLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVG----------ITGVILTKLDG-DAKGGAALSI 161
|
170 180
....*....|....*....|....*....
gi 1063725895 601 VYISGSPVMFVGCGQSYTDLKKLNVKAIV 629
Cdd:pfam00448 162 VAETGKPIKFIGVGEKIDDLEPFDPERFV 190
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
326-634 |
3.20e-54 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 187.15 E-value: 3.20e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 326 KKGWFSSVFQSITGKANLERTDLgpalKALKERLMTKNVAEEIAEKLCESVEASLEGKKLSSftriSSTVQAAMEDALVR 405
Cdd:COG0552 13 RSGLGEKLKSLFSGKKKIDEDLL----EELEELLIEADVGVETTEEIIEELRERVKRKKLKD----PEELKEALKEELLE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 406 ILTPR-RSIDIlrdvhaakEQRKPYvvvfvgvngvgKSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQI 484
Cdd:COG0552 85 ILDPVdKPLAI--------EEKKPFvilvvgvngvgKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 485 PIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKL------INLNQPDLVLFVGEALVGNDAVD 558
Cdd:COG0552 157 PVIAQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIkrvikkLDPDAPHEVLLVLDATTGQNALS 236
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1063725895 559 QLSKFNQKLSdlstsgnprlIDGILLTKFDTiDDKVGAALSMVYISGSPVMFVGCGQSYTDLKKLNVKAIVKTLLK 634
Cdd:COG0552 237 QAKVFNEAVG----------VTGIVLTKLDG-TAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
355-633 |
9.80e-54 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 185.15 E-value: 9.80e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 355 LKERLMTKNVAEEIAEKLCESVEASLEGKKLSSFTRISSTVQAAMEDALVRILTPRRSIDILrdvhaaKEQRKPYVVVFV 434
Cdd:TIGR00064 10 LEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNTDLELI------VEENKPNVILFV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 435 GVNGVGKSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVV 514
Cdd:TIGR00064 84 GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVV 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 515 LVDTAGRMQDNEPLMRALSKLINL------NQPDLVLFVGEALVGNDAVDQLSKFNQKLSdlstsgnprlIDGILLTKFD 588
Cdd:TIGR00064 164 LIDTAGRLQNKVNLMDELKKIKRVikkvdkDAPDEVLLVLDATTGQNALEQAKVFNEAVG----------LTGIILTKLD 233
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1063725895 589 TiDDKVGAALSMVYISGSPVMFVGCGQSYTDLKKLNVKAIVKTLL 633
Cdd:TIGR00064 234 G-TAKGGIILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| SR_alpha_SRX |
cd14826 |
SRX domain of signal recognition particle receptor subunit alpha; Signal recognition particle ... |
3-116 |
1.80e-44 |
|
SRX domain of signal recognition particle receptor subunit alpha; Signal recognition particle receptor subunit alpha (SR-alpha) is part of the membrane-associated heterodimeric receptor for the signal recognition particle (SRP). The signal recognition particle (SRP) pathway is highly conserved and plays an important role in the translocation of proteins across and insertion into membranes by targeting the translating ribosome to the endoplasmic reticulum. The N-terminal SRX domain of SR-alpha has a profilin-like fold and has been shown to be the interaction site with the second subunit, SR-beta.
Pssm-ID: 341430 Cd Length: 118 Bit Score: 154.28 E-value: 1.80e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 3 EQLLIFTRGGLILWtCKEIGNALKGSPIDTLIRSCLLEERSGAVSFNYDApgaaYTLKWTFHNDLGLVFVAVYQRILHLL 82
Cdd:cd14826 1 DQFSIFTKGGIVLW-SFNFTGLFKGSPINALIKDVLLEERSGESSFTYDS----YTLKWTLDNELGLVFVVVYQKILQLQ 75
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1063725895 83 YVDDLLSMVKQSFSEVYDPKRMA---------YDDFDETFRQL 116
Cdd:cd14826 76 YIDELLDLVKKLFVSLYKNELKNknalgidddLFKFDEYFKQK 118
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
330-399 |
7.78e-06 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 43.99 E-value: 7.78e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1063725895 330 FSSVFQSITGKANLERTDLGPALKALKERLMTKNVAEEIAEKLCESVEASLEG-KKLSSFTRISSTVQAAM 399
Cdd:pfam02881 5 LSSLFKGLRGKGKIDEEDLEEALKELEEALLEADVGVEVVKKIIERLREKAVGeKKLKPPQEVKKILKEEL 75
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
441-632 |
1.09e-135 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 395.06 E-value: 1.09e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 441 KSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAG 520
Cdd:cd17876 13 KSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARDQGFDVVLIDTAG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 521 RMQDNEPLMRALSKLINLNQPDLVLFVGEALVGNDAVDQLSKFNQKLSDLSTSGNPRLIDGILLTKFDTIDDKVGAALSM 600
Cdd:cd17876 93 RMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFNQALADYSPSDNPRLIDGIVLTKFDTIDDKVGAALSM 172
|
170 180 190
....*....|....*....|....*....|..
gi 1063725895 601 VYISGSPVMFVGCGQSYTDLKKLNVKAIVKTL 632
Cdd:cd17876 173 VYATGQPIVFVGTGQTYTDLKKLNVKAVVNSL 204
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
299-633 |
5.73e-76 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 246.04 E-value: 5.73e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 299 KEEVFSSDSESEDDDEPGSDEKPAQAKKKGwfSSVFQSITGKAnLERTDLGPALKALKERLMTKNVAEEIAEKLCESVEA 378
Cdd:PRK14974 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKEK--PGFFDKAKITE-IKEKDIEDLLEELELELLESDVALEVAEEILESLKE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 379 SLEGKKLSSFTRISSTVQAAMEDALVRILTPRRSIDILRDVhaaKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHKVS 458
Cdd:PRK14974 94 KLVGKKVKRGEDVEEIVKNALKEALLEVLSVGDLFDLIEEI---KSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFS 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 459 VMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLINL 538
Cdd:PRK14974 171 VVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRV 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 539 NQPDLVLFVGEALVGNDAVDQLSKFNQKLSdlstsgnprlIDGILLTKFDTiDDKVGAALSMVYISGSPVMFVGCGQSYT 618
Cdd:PRK14974 251 TKPDLVIFVGDALAGNDAVEQAREFNEAVG----------IDGVILTKVDA-DAKGGAALSIAYVIGKPILFLGVGQGYD 319
|
330
....*....|....*
gi 1063725895 619 DLKKLNVKAIVKTLL 633
Cdd:PRK14974 320 DLIPFDPDWFVDKLL 334
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
441-634 |
2.02e-70 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 226.14 E-value: 2.02e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 441 KSTNLAKVAYWLQ-QHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTA 519
Cdd:smart00962 14 KTTTIAKLAARLKlKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELAKARGYDVVLIDTA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 520 GRMQDNEPLMRALSKLINLNQPDLVLFVGEALVGNDAVDQLSKFNQKLSdlstsgnprlIDGILLTKFDtIDDKVGAALS 599
Cdd:smart00962 94 GRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALG----------LTGIILTKLD-GTAKGGAALS 162
|
170 180 190
....*....|....*....|....*....|....*
gi 1063725895 600 MVYISGSPVMFVGCGQSYTDLKKLNVKAIVKTLLK 634
Cdd:smart00962 163 IAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP-alpha_N |
pfam04086 |
Signal recognition particle, alpha subunit, N-terminal; SRP is a complex of six distinct ... |
29-301 |
5.51e-70 |
|
Signal recognition particle, alpha subunit, N-terminal; SRP is a complex of six distinct polypeptides and a 7S RNA that is essential for transferring nascent polypeptide chains that are destined for export from the cell to the translocation apparatus of the endoplasmic reticulum (ER) membrane. SRP binds hydrophobic signal sequences as they emerge from the ribosome, and arrests translation.
Pssm-ID: 461165 Cd Length: 281 Bit Score: 228.45 E-value: 5.51e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 29 PIDTLIRSCLLEERSGAVSFNYDApgaaYTLKWTFHNDLGLVFVAVYQRILHLLYVDDLLSMVKQSFSEVYDPKRMAY-- 106
Cdd:pfam04086 1 PINALIRDVLLEERSGNPSFKHDS----YTLKWTLDNELGLVFVAVYQKILHLSYVDKLLDNVKTIFVDLYKDQLKPYtt 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 107 ----DDFDETFRQLRIEAEARAEELRKTKQVGKPVTSVKKQG------QVSKPGLEGGNKRVSSEGGSKKDDGDGGNKAK 176
Cdd:pfam04086 77 lvecPDFDEYFDQLLREAEESAAAQAKAPKAMKTFEESKKSQktvksmIEDRPPPPPGKKKKGAKKEAPAAGDAGSDDST 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 177 VSTLTNGHSNGNhqmeddsqetndlANGKENTSSNVAVDLSKLQKLRSKGVRGRGGVRKTDSiGNKSSKVAEPAKKAtKK 256
Cdd:pfam04086 157 PSATPDTSRPST-------------PLLTAKGAGPGAGDVSRRNRKALNKKRSGAGASSGDE-SSKSPKPPKKKKKG-KK 221
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1063725895 257 NRVWDD--AAPKQSKLDFTDSIDENGNNDH----VDIVAADQGESMMDKEE 301
Cdd:pfam04086 222 ARVWDAdgSADEADQLDYSAPADENGGEAEgesaVEAVDQSTWGSKTGKGQ 272
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
441-632 |
8.56e-68 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 219.17 E-value: 8.56e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 441 KSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAG 520
Cdd:cd03115 13 KTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKLEGYDVLLVDTAG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 521 RMQDNEPLMRALSKLINLNQPDLVLFVGEALVGNDAVDQLSKFNQKLSdlstsgnprlIDGILLTKFDTiDDKVGAALSM 600
Cdd:cd03115 93 RLQKDEPLMEELKKVKEVESPDEVLLVLDATTGQEALSQAKAFNEAVG----------LTGVILTKLDG-TAKGGAALSI 161
|
170 180 190
....*....|....*....|....*....|..
gi 1063725895 601 VYISGSPVMFVGCGQSYTDLKKLNVKAIVKTL 632
Cdd:cd03115 162 VAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
441-629 |
9.31e-59 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 195.45 E-value: 9.31e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 441 KSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAG 520
Cdd:pfam00448 13 KTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKAENYDVVLVDTAG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 521 RMQDNEPLMRALSKLINLNQPDLVLFVGEALVGNDAVDQLSKFNQKLSdlstsgnprlIDGILLTKFDTiDDKVGAALSM 600
Cdd:pfam00448 93 RLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVG----------ITGVILTKLDG-DAKGGAALSI 161
|
170 180
....*....|....*....|....*....
gi 1063725895 601 VYISGSPVMFVGCGQSYTDLKKLNVKAIV 629
Cdd:pfam00448 162 VAETGKPIKFIGVGEKIDDLEPFDPERFV 190
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
326-634 |
3.20e-54 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 187.15 E-value: 3.20e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 326 KKGWFSSVFQSITGKANLERTDLgpalKALKERLMTKNVAEEIAEKLCESVEASLEGKKLSSftriSSTVQAAMEDALVR 405
Cdd:COG0552 13 RSGLGEKLKSLFSGKKKIDEDLL----EELEELLIEADVGVETTEEIIEELRERVKRKKLKD----PEELKEALKEELLE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 406 ILTPR-RSIDIlrdvhaakEQRKPYvvvfvgvngvgKSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQI 484
Cdd:COG0552 85 ILDPVdKPLAI--------EEKKPFvilvvgvngvgKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 485 PIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKL------INLNQPDLVLFVGEALVGNDAVD 558
Cdd:COG0552 157 PVIAQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIkrvikkLDPDAPHEVLLVLDATTGQNALS 236
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1063725895 559 QLSKFNQKLSdlstsgnprlIDGILLTKFDTiDDKVGAALSMVYISGSPVMFVGCGQSYTDLKKLNVKAIVKTLLK 634
Cdd:COG0552 237 QAKVFNEAVG----------VTGIVLTKLDG-TAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
441-632 |
8.69e-54 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 182.39 E-value: 8.69e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 441 KSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAG 520
Cdd:cd17874 13 KTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKARGIDVVLIDTAG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 521 RMQDNEPLMRALSKLINL------NQPDLVLFVGEALVGNDAVDQLSKFNQKLSdlstsgnprlIDGILLTKFDTiDDKV 594
Cdd:cd17874 93 RLHTKKNLMEELKKIKRVikkkdpEAPHEVLLVLDATTGQNALEQAKEFNEAVG----------LTGIILTKLDG-TAKG 161
|
170 180 190
....*....|....*....|....*....|....*...
gi 1063725895 595 GAALSMVYISGSPVMFVGCGQSYTDLKKLNVKAIVKTL 632
Cdd:cd17874 162 GIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
355-633 |
9.80e-54 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 185.15 E-value: 9.80e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 355 LKERLMTKNVAEEIAEKLCESVEASLEGKKLSSFTRISSTVQAAMEDALVRILTPRRSIDILrdvhaaKEQRKPYVVVFV 434
Cdd:TIGR00064 10 LEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNTDLELI------VEENKPNVILFV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 435 GVNGVGKSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVV 514
Cdd:TIGR00064 84 GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVV 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 515 LVDTAGRMQDNEPLMRALSKLINL------NQPDLVLFVGEALVGNDAVDQLSKFNQKLSdlstsgnprlIDGILLTKFD 588
Cdd:TIGR00064 164 LIDTAGRLQNKVNLMDELKKIKRVikkvdkDAPDEVLLVLDATTGQNALEQAKVFNEAVG----------LTGIILTKLD 233
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1063725895 589 TiDDKVGAALSMVYISGSPVMFVGCGQSYTDLKKLNVKAIVKTLL 633
Cdd:TIGR00064 234 G-TAKGGIILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
441-620 |
4.79e-48 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 174.05 E-value: 4.79e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 441 KSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAG 520
Cdd:COG0541 113 KTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVFPEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAG 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 521 RMQDNEPLMRALSKLINLNQPDLVLFVGEALVGNDAVDQLSKFNQKLSdlstsgnprlIDGILLTKFDTiDDKVGAALSM 600
Cdd:COG0541 193 RLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEALG----------LTGVILTKLDG-DARGGAALSI 261
|
170 180
....*....|....*....|
gi 1063725895 601 VYISGSPVMFVGCGQSYTDL 620
Cdd:COG0541 262 RAVTGKPIKFIGTGEKLDDL 281
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
441-620 |
3.15e-47 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 164.69 E-value: 3.15e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 441 KSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAG 520
Cdd:cd18539 13 KTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKEEGFDVVIVDTAG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 521 RMQDNEPLMRALSKLINLNQPDLVLFVGEALVGNDAVDQLSKFNQKLSdlstsgnprlIDGILLTKFDTiDDKVGAALSM 600
Cdd:cd18539 93 RLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLG----------LTGVVLTKLDG-DARGGAALSI 161
|
170 180
....*....|....*....|
gi 1063725895 601 VYISGSPVMFVGCGQSYTDL 620
Cdd:cd18539 162 RHVTGKPIKFIGVGEKIEDL 181
|
|
| SR_alpha_SRX |
cd14826 |
SRX domain of signal recognition particle receptor subunit alpha; Signal recognition particle ... |
3-116 |
1.80e-44 |
|
SRX domain of signal recognition particle receptor subunit alpha; Signal recognition particle receptor subunit alpha (SR-alpha) is part of the membrane-associated heterodimeric receptor for the signal recognition particle (SRP). The signal recognition particle (SRP) pathway is highly conserved and plays an important role in the translocation of proteins across and insertion into membranes by targeting the translating ribosome to the endoplasmic reticulum. The N-terminal SRX domain of SR-alpha has a profilin-like fold and has been shown to be the interaction site with the second subunit, SR-beta.
Pssm-ID: 341430 Cd Length: 118 Bit Score: 154.28 E-value: 1.80e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 3 EQLLIFTRGGLILWtCKEIGNALKGSPIDTLIRSCLLEERSGAVSFNYDApgaaYTLKWTFHNDLGLVFVAVYQRILHLL 82
Cdd:cd14826 1 DQFSIFTKGGIVLW-SFNFTGLFKGSPINALIKDVLLEERSGESSFTYDS----YTLKWTLDNELGLVFVVVYQKILQLQ 75
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1063725895 83 YVDDLLSMVKQSFSEVYDPKRMA---------YDDFDETFRQL 116
Cdd:cd14826 76 YIDELLDLVKKLFVSLYKNELKNknalgidddLFKFDEYFKQK 118
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
324-634 |
2.12e-38 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 144.47 E-value: 2.12e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 324 AKKKGWFSSVFQSITGKANLErTDLgpaLKALKERLMTKNVAEEIAEKLCESVEASLEGKKLSSftriSSTVQAAMEDAL 403
Cdd:PRK10416 25 SKTRENFGEGINGLFAKKKID-EDL---LEELEELLIEADVGVETTEEIIEELRERVKRKNLKD----PEELKELLKEEL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 404 VRILTPR-RSIDIlrdvhaakEQRKPYvvvfvgvngvgKSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRL 482
Cdd:PRK10416 97 AEILEPVeKPLNI--------EEKKPFvilvvgvngvgKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERV 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 483 QIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLINL------NQPDLVLFVGEALVGNDA 556
Cdd:PRK10416 169 GVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVikkadpDAPHEVLLVLDATTGQNA 248
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1063725895 557 VDQLSKFNQKLSdlstsgnprlIDGILLTKFD-TidDKVGAALSMVYISGSPVMFVGCGQSYTDLKKLNVKAIVKTLLK 634
Cdd:PRK10416 249 LSQAKAFHEAVG----------LTGIILTKLDgT--AKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
441-632 |
3.35e-35 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 131.55 E-value: 3.35e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 441 KSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAG 520
Cdd:cd17875 13 KTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKKEKFDIIIVDTSG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 521 R-MQDNEPL--MRALSKLInlnQPDLVLFVGEALVGNDAVDQLSKFNQKLSdlstsgnprlIDGILLTKFDTiDDKVGAA 597
Cdd:cd17875 93 RhKQEEELFeeMKQISDAV---KPDEVILVIDASIGQAAEDQAKAFKEAVD----------IGSVIITKLDG-HAKGGGA 158
|
170 180 190
....*....|....*....|....*....|....*
gi 1063725895 598 LSMVYISGSPVMFVGCGQSYTDLKKLNVKAIVKTL 632
Cdd:cd17875 159 LSAVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
441-633 |
1.65e-30 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 124.55 E-value: 1.65e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 441 KSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIqEATRNgSDVVLVDTAG 520
Cdd:PRK00771 108 KTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL-EKFKK-ADVIIVDTAG 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 521 RMQDNEPLMRALSKLINLNQPDLVLFVGEALVGNDAVDQLSKFNQKLSdlstsgnprlIDGILLTKFDTiDDKVGAALSM 600
Cdd:PRK00771 186 RHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVG----------IGGIIITKLDG-TAKGGGALSA 254
|
170 180 190
....*....|....*....|....*....|...
gi 1063725895 601 VYISGSPVMFVGCGQSYTDLKKLNVKAIVKTLL 633
Cdd:PRK00771 255 VAETGAPIKFIGTGEKIDDLERFDPDRFISRLL 287
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
331-633 |
2.92e-27 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 114.93 E-value: 2.92e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 331 SSVFQSITGKANLERTDLGPALKALKERLMTKNVAEEIAEKLCESVEASLEGKKLSSFTRISSTVQAAMEDALVRILTPR 410
Cdd:TIGR01425 10 VTALRSMSSATVIDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFEELCNLVDPG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 411 rsidilrdVHAAKEQR-KPYVVVFVGVNGVGKSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEK 489
Cdd:TIGR01425 90 --------VEAFTPKKgKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYGS 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 490 GYEKDPAVVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLINLNQPDLVLFVGEALVGNDAVDQLSKFNQKLSd 569
Cdd:TIGR01425 162 YEESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQAAFGQAKAFKDSVE- 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1063725895 570 lstsgnprlIDGILLTKFDTiDDKVGAALSMVYISGSPVMFVGCGQSYTDLKKLNVKAIVKTLL 633
Cdd:TIGR01425 241 ---------VGSVIITKLDG-HAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLL 294
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
273-634 |
6.84e-26 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 109.57 E-value: 6.84e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 273 TDSIDENGNNDHVDIVAAdqgesmMDKEEVFSSDSESEDDDEPGSDEKPAQAKK--------KGWFSSVFQSITGkanlE 344
Cdd:COG1419 31 TRKVKKGGFLKKVEVTAA------VDEDEAEKAPAAAAAPAAASAAAEEEELEElrrelaelKELLEEQLSGLAG----E 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 345 RTDLGPALKALKERLMTKNVAEEIAEKLCESVEASLEgkklssftriSSTVQAAMEDALVRILTPRRSiDILrdvhaakE 424
Cdd:COG1419 101 SARLPPELAELLERLLEAGVSPELARELLEKLPEDLS----------AEEAWRALLEALARRLPVAED-PLL-------D 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 425 QRKPYvvvfvgvngvgKSTNLAKVAYWL-QQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDpavvAKEAI 503
Cdd:COG1419 163 EGGVIalvgp--tgvgKTTTIAKLAARFvLRGKKKVALITTDTYRIGAVEQLKTYARILGVPVEVAYDPEE----LKEAL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 504 QEAtrNGSDVVLVDTAGRMQDNEPLMRALSKLINLNQPDLVLFV------GEALvgNDAVDQLSKFNqklsdlstsgnpr 577
Cdd:COG1419 237 ERL--RDKDLVLIDTAGRSPRDPELIEELKALLDAGPPIEVYLVlsattkYEDL--KEIVEAFSSLG------------- 299
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1063725895 578 lIDGILLTKFD-TidDKVGAALSMVYISGSPVMFVGCGQSYT-DLKKLNVKAIVKTLLK 634
Cdd:COG1419 300 -LDGLILTKLDeT--ASLGSILNLLIRTGLPLSYITNGQRVPeDIEVADPERLARLLLG 355
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
441-632 |
1.12e-19 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 87.22 E-value: 1.12e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 441 KSTNLAKVA--YWLQQHKvSVMMAACDTFRSGAVEQLRTHARRLQIPiFEKGYEKDPAVVAKEAIQEAtrngsDVVLVDT 518
Cdd:cd17873 13 KTTTLAKLAarYVLKKGK-KVALITTDTYRIGAVEQLKTYAEIMGIP-VEVAEDPEDLADALERLSDR-----DLILIDT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 519 AGRMQDNEPLMRALSKLINLNQPD---LVLFVG-EALVGNDAVDQLSKFNqklsdlstsgnprlIDGILLTKFDTIdDKV 594
Cdd:cd17873 86 AGRSPRDKEQLEELKELLGAGEDIevhLVLSATtKAKDLKEIIERFSPLG--------------YRGLILTKLDET-TSL 150
|
170 180 190
....*....|....*....|....*....|....*....
gi 1063725895 595 GAALSMVYISGSPVMFVGCGQSY-TDLKKLNVKAIVKTL 632
Cdd:cd17873 151 GSVLSVLAESQLPVSYVTTGQRVpEDIEVASPLRLARLL 189
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
441-634 |
5.75e-15 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 77.24 E-value: 5.75e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 441 KSTNLAKVA--YWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIfEKGYEKDPavvAKEAIqEATRNGsDVVLVDT 518
Cdd:PRK05703 234 KTTTLAKLAarYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV-EVVYDPKE---LAKAL-EQLRDC-DVILIDT 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 519 AGRMQDNEPLMRALSKLI-NLNQPD---LVLFVG---EALVgnDAVDQLSKFNqklsdlstsgnprlIDGILLTKFD-Ti 590
Cdd:PRK05703 308 AGRSQRDKRLIEELKALIeFSGEPIdvyLVLSATtkyEDLK--DIYKHFSRLP--------------LDGLIFTKLDeT- 370
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1063725895 591 dDKVGAALSMVYISGSPVMFVGCGQSY-TDLKKLNVKAIVKTLLK 634
Cdd:PRK05703 371 -SSLGSILSLLIESGLPISYLTNGQRVpDDIKVANPEELVRLLLG 414
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
441-619 |
1.07e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 63.99 E-value: 1.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 441 KSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFekgYEKDPAVVaKEAIQEATR-NGSDVVLVDTA 519
Cdd:PRK12726 219 KTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI---VATSPAEL-EEAVQYMTYvNCVDHILIDTV 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 520 GRMQDNEPLMRALSKLINLNQPDLVLFVGEAlvGNDAVDQLSKFnQKLSDLStsgnprlIDGILLTKFDTIdDKVGAALS 599
Cdd:PRK12726 295 GRNYLAEESVSEISAYTDVVHPDLTCFTFSS--GMKSADVMTIL-PKLAEIP-------IDGFIITKMDET-TRIGDLYT 363
|
170 180
....*....|....*....|
gi 1063725895 600 MVYISGSPVMFVGCGQSYTD 619
Cdd:PRK12726 364 VMQETNLPVLYMTDGQNITE 383
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
441-520 |
2.64e-10 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 61.58 E-value: 2.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 441 KSTNLAKVA--YWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDpavvAKEAIQEAtrNGSDVVLVDT 518
Cdd:TIGR03499 207 KTTTLAKLAarFALEHGKKKVALITTDTYRIGAVEQLKTYAEILGIPVKVARDPKE----LREALDRL--RDKDLILIDT 280
|
..
gi 1063725895 519 AG 520
Cdd:TIGR03499 281 AG 282
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
350-591 |
6.18e-08 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 55.36 E-value: 6.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 350 PALKALKERLMTKNVAEEIAEKLCESVEaslegKKLSSftrISSTVQAAMEDALVRILTPRRSIDILRDVHAAKEQRKpy 429
Cdd:PRK12724 155 SPLQRLGERLVREGMSQSYVEEMASKLE-----ERLSP---VDQGRNHNVTERAVTYLEERVSVDSDLFSGTGKNQRK-- 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 430 VVVFVGVNGVGKSTNLAKVA--YWLQQHKvSVMMAACDTFRSGAVEQLRTHARRLQIPIFekgyekdPAVVAKEAIQEAT 507
Cdd:PRK12724 225 VVFFVGPTGSGKTTSIAKLAakYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFY-------PVKDIKKFKETLA 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 508 RNGSDVVLVDTAGRMQDN-EPLMRALSKLINLNQPDLV--LFVGEALVGNDAVDQLSKFNQKLsdlstsGNPRlidgILL 584
Cdd:PRK12724 297 RDGSELILIDTAGYSHRNlEQLERMQSFYSCFGEKDSVenLLVLSSTSSYHHTLTVLKAYESL------NYRR----ILL 366
|
....*..
gi 1063725895 585 TKFDTID 591
Cdd:PRK12724 367 TKLDEAD 373
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
441-622 |
3.91e-07 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 52.06 E-value: 3.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 441 KSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQipiFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAG 520
Cdd:PRK06731 88 KTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIG---FEVIAVRDEAAMTRALTYFKEEARVDYILIDTAG 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 521 RMQDNEPLMRALSKLINLNQPDLV-LFVGEALVGNDAVDQLSKFNqklsDLStsgnprlIDGILLTKFDTIDDKvGAALS 599
Cdd:PRK06731 165 KNYRASETVEEMIETMGQVEPDYIcLTLSASMKSKDMIEIITNFK----DIH-------IDGIVFTKFDETASS-GELLK 232
|
170 180
....*....|....*....|...
gi 1063725895 600 MVYISGSPVMFVGCGQsytDLKK 622
Cdd:PRK06731 233 IPAVSSAPIVLMTDGQ---DVKK 252
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
441-622 |
1.26e-06 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 51.22 E-value: 1.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 441 KSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKgyeKDPAVV--AKEAIQEATRngSDVVLVDT 518
Cdd:PRK11889 254 KTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV---RDEAAMtrALTYFKEEAR--VDYILIDT 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 519 AGRMQDNEPLMRALSKLINLNQPDLV-LFVGEALVGNDAVDQLSKFNqklsDLStsgnprlIDGILLTKFDTIDDKvGAA 597
Cdd:PRK11889 329 AGKNYRASETVEEMIETMGQVEPDYIcLTLSASMKSKDMIEIITNFK----DIH-------IDGIVFTKFDETASS-GEL 396
|
170 180
....*....|....*....|....*
gi 1063725895 598 LSMVYISGSPVMFVGCGQsytDLKK 622
Cdd:PRK11889 397 LKIPAVSSAPIVLMTDGQ---DVKK 418
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
441-632 |
1.41e-06 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 51.14 E-value: 1.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 441 KSTNLAKVAY-WLQQHKV-SVMMAACDTFRSGAVEQLRTHARRLQIPIfekgYEKDPAvvakEAIQEATRNGSD--VVLV 516
Cdd:PRK12727 363 KTTTIAKLAQrFAAQHAPrDVALVTTDTQRVGGREQLHSYGRQLGIAV----HEADSA----ESLLDLLERLRDykLVLI 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 517 DTAGRMQDNEPL------MRALSKLINLnqpdLVLfvgealvgndavdqlsKFNQKLSDLS------TSGNPRlidGILL 584
Cdd:PRK12727 435 DTAGMGQRDRALaaqlnwLRAARQVTSL----LVL----------------PANAHFSDLDevvrrfAHAKPQ---GVVL 491
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1063725895 585 TKFDTIdDKVGAALSMVYISGSPVMFVGCGQSY-TDLKKLNVKAIVKTL 632
Cdd:PRK12727 492 TKLDET-GRFGSALSVVVDHQMPITWVTDGQRVpDDLHRANAASLVLRL 539
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
330-399 |
7.78e-06 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 43.99 E-value: 7.78e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1063725895 330 FSSVFQSITGKANLERTDLGPALKALKERLMTKNVAEEIAEKLCESVEASLEG-KKLSSFTRISSTVQAAM 399
Cdd:pfam02881 5 LSSLFKGLRGKGKIDEEDLEEALKELEEALLEADVGVEVVKKIIERLREKAVGeKKLKPPQEVKKILKEEL 75
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
439-553 |
1.65e-04 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 42.36 E-value: 1.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 439 VGKSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRtharrlQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDT 518
Cdd:smart00382 13 SGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDE 86
|
90 100 110
....*....|....*....|....*....|....*
gi 1063725895 519 AGRMQDNEPLMRALSKLINLNQPDLVLFVGEALVG 553
Cdd:smart00382 87 ITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVIL 121
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
441-615 |
1.96e-04 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 44.41 E-value: 1.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 441 KSTNLAKVA--YWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKgyeKDPAVVaKEAIQEAtrNGSDVVLVDT 518
Cdd:PRK14723 198 KTTTTAKLAarCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAV---KDAADL-RFALAAL--GDKHLVLIDT 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 519 AGRMQDNEPLMRALSKLINLNQPDLVLFVGEALVGNDAVDQLSKF--NQKLSDlstsgnprlIDGILLTKFDTIdDKVGA 596
Cdd:PRK14723 272 VGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAyrHGAGED---------VDGCIITKLDEA-THLGP 341
|
170
....*....|....*....
gi 1063725895 597 ALSMVYISGSPVMFVGCGQ 615
Cdd:PRK14723 342 ALDTVIRHRLPVHYVSTGQ 360
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
441-627 |
1.28e-03 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 41.63 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 441 KSTNLAKVAYW--LQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEaiqeaTRNgSDVVLVDT 518
Cdd:PRK14722 150 KTTTTAKLAARcvMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-----LRN-KHMVLIDT 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063725895 519 AGRMQDNEPLMRALSKLINLNQPDLVLFVGEALVGNDAVDQLSKFNQklsdlSTSGNPRL----IDGILLTKFDTIDDkV 594
Cdd:PRK14722 224 IGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYR-----SAAGQPKAalpdLAGCILTKLDEASN-L 297
|
170 180 190
....*....|....*....|....*....|....*...
gi 1063725895 595 GAALSMVYISGSPVMFVGCGQS-----YTDLKKLNVKA 627
Cdd:PRK14722 298 GGVLDTVIRYKLPVHYVSTGQKvpenlYVATKKFLLKS 335
|
|
| |
