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Conserved domains on  [gi|1063725309|ref|NP_001328943|]
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prenylated RAB acceptor 1.H [Arabidopsis thaliana]

Protein Classification

PRA1 family protein( domain architecture ID 2206)

prenylated Rab acceptor protein 1 (PRA1) family protein facilitates the delivery of Rab GTPases to the membrane by dissociating the Rab-GDI complex during vesicle trafficking

Gene Ontology:  GO:0016020|GO:0015031
PubMed:  16473601

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRA1 super family cl02137
PRA1 family protein; This family includes the PRA1 (Prenylated rab acceptor) protein which is ...
 113-168 5.45e-05

PRA1 family protein; This family includes the PRA1 (Prenylated rab acceptor) protein which is a Rab guanine dissociation inhibitor (GDI) displacement factor. This family also includes the glutamate transporter EAAC1 interacting protein GTRAP3-18.


The actual alignment was detected with superfamily member pfam03208:

Pssm-ID: 470476  Cd Length: 141  Bit Score: 41.74  E-value: 5.45e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1063725309 113 DSYSFPSSSQQARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLGSLALW 168
Cdd:pfam03208  16 SRFSRPRSFSEATSRVKRNLLYFRTNYFIVVLLLLFLSLLTHPLSLIVFLVVLAAW 71
 
Name Accession Description Interval E-value
PRA1 pfam03208
PRA1 family protein; This family includes the PRA1 (Prenylated rab acceptor) protein which is ...
 113-168 5.45e-05

PRA1 family protein; This family includes the PRA1 (Prenylated rab acceptor) protein which is a Rab guanine dissociation inhibitor (GDI) displacement factor. This family also includes the glutamate transporter EAAC1 interacting protein GTRAP3-18.


Pssm-ID: 460846  Cd Length: 141  Bit Score: 41.74  E-value: 5.45e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1063725309 113 DSYSFPSSSQQARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLGSLALW 168
Cdd:pfam03208  16 SRFSRPRSFSEATSRVKRNLLYFRTNYFIVVLLLLFLSLLTHPLSLIVFLVVLAAW 71
 
Name Accession Description Interval E-value
PRA1 pfam03208
PRA1 family protein; This family includes the PRA1 (Prenylated rab acceptor) protein which is ...
 113-168 5.45e-05

PRA1 family protein; This family includes the PRA1 (Prenylated rab acceptor) protein which is a Rab guanine dissociation inhibitor (GDI) displacement factor. This family also includes the glutamate transporter EAAC1 interacting protein GTRAP3-18.


Pssm-ID: 460846  Cd Length: 141  Bit Score: 41.74  E-value: 5.45e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1063725309 113 DSYSFPSSSQQARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLGSLALW 168
Cdd:pfam03208  16 SRFSRPRSFSEATSRVKRNLLYFRTNYFIVVLLLLFLSLLTHPLSLIVFLVVLAAW 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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