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Conserved domains on  [gi|1063717317|ref|NP_001326285|]
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AGAMOUS-like 16 [Arabidopsis thaliana]

Protein Classification

K-box domain-containing protein( domain architecture ID 10478719)

K-box domain-containing protein may have a coiled-coil structure, and a possible role in multimer formation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
K-box pfam01486
K-box region; The K-box region is commonly found associated with SRF-type transcription ...
 47-136 4.50e-26

K-box region; The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation.


:

Pssm-ID: 460228 [Multi-domain]  Cd Length: 91  Bit Score: 95.99  E-value: 4.50e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063717317  47 DPASEIQFWQKEAAILKRQLHNLQENHRQMMGEELSGLSVEALQNLENQLELSLRGVRMKKDQMLIEEIQVLNREGNLVH 126
Cdd:pfam01486   1 SEENEQENWQQEAAKLKKEIENLQRSQRQLLGEDLSSLSLKELQQLEQQLEKSLKRIRSRKNQLLLEQIEELKKKERILQ 80

                          90
                  ....*....|
gi 1063717317 127 QENLDLHKKV 136
Cdd:pfam01486  81 EENKELRKKL 90
 
Name Accession Description Interval E-value
K-box pfam01486
K-box region; The K-box region is commonly found associated with SRF-type transcription ...
 47-136 4.50e-26

K-box region; The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation.


Pssm-ID: 460228 [Multi-domain]  Cd Length: 91  Bit Score: 95.99  E-value: 4.50e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063717317  47 DPASEIQFWQKEAAILKRQLHNLQENHRQMMGEELSGLSVEALQNLENQLELSLRGVRMKKDQMLIEEIQVLNREGNLVH 126
Cdd:pfam01486   1 SEENEQENWQQEAAKLKKEIENLQRSQRQLLGEDLSSLSLKELQQLEQQLEKSLKRIRSRKNQLLLEQIEELKKKERILQ 80

                          90
                  ....*....|
gi 1063717317 127 QENLDLHKKV 136
Cdd:pfam01486  81 EENKELRKKL 90
 
Name Accession Description Interval E-value
K-box pfam01486
K-box region; The K-box region is commonly found associated with SRF-type transcription ...
 47-136 4.50e-26

K-box region; The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation.


Pssm-ID: 460228 [Multi-domain]  Cd Length: 91  Bit Score: 95.99  E-value: 4.50e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063717317  47 DPASEIQFWQKEAAILKRQLHNLQENHRQMMGEELSGLSVEALQNLENQLELSLRGVRMKKDQMLIEEIQVLNREGNLVH 126
Cdd:pfam01486   1 SEENEQENWQQEAAKLKKEIENLQRSQRQLLGEDLSSLSLKELQQLEQQLEKSLKRIRSRKNQLLLEQIEELKKKERILQ 80

                          90
                  ....*....|
gi 1063717317 127 QENLDLHKKV 136
Cdd:pfam01486  81 EENKELRKKL 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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