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Conserved domains on  [gi|1063711057|ref|NP_001326249|]
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XH/XS domain-containing protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RRM_like_XS cd12266
RNA recognition motif (RRM)-like XS domain found in plants; This XS (named after rice gene X ...
 120-227 6.50e-47

RNA recognition motif (RRM)-like XS domain found in plants; This XS (named after rice gene X and SGS3) domain is a single-stranded RNA-binding domain (RBD) and possesses a unique version of a RNA recognition motif (RRM) fold. It is conserved in a family of plant proteins including gene X and SGS3. Although its function is still unknown, the plant SGS3 proteins are thought to be involved in post-transcriptional gene silencing (PTGS) pathways. In addition, they contain a conserved aspartate residue that may be functionally important.


:

Pssm-ID: 409710  Cd Length: 107  Bit Score: 159.83  E-value: 6.50e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 120 LVWPWKGVLVNIPTTsTEDGRSCTGESGPKLKDELIRrgFNPIRVRTVWDRFGHSGTGIVEFNRDWNGLQDALVFKKAYE 199
Cdd:cd12266     1 IVWPWMGIVVNTPTT-KDDNRKMEGGSNKELLERLIK--FGPTRVKPLWNPQGHTGTAIVKFNSDWNGFRNALRFEKAFE 77

                          90       100       110
                  ....*....|....*....|....*....|
gi 1063711057 200 GDGHGKKDW--LCGATDSSLYAWLANADDY 227
Cdd:cd12266    78 VDGHGKKDWrnKKGGRKSKLYGWLARADDY 107
XH super family cl04094
XH domain; The XH (rice gene X Homology) domain is found in a family of plant proteins ...
 504-563 1.82e-21

XH domain; The XH (rice gene X Homology) domain is found in a family of plant proteins including gene X. The molecular function of these proteins is unknown. However these proteins usually contain an XS domain that is also found in the PTGS protein SGS3. This domain contains a conserved glutamate residue that may be functionally important.


The actual alignment was detected with superfamily member pfam03469:

Pssm-ID: 460934 [Multi-domain]  Cd Length: 131  Bit Score: 90.34  E-value: 1.82e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 504 KRMGELDTKPFMKAMRIKYCQEDLEDWAVEVIQLWEEYLKDPDWHPFKRIKLETAETIVV 563
Cdd:pfam03469   1 KRMGELDEKPFLNACKQKFSNEEAEVKAAELCSLWEEELKDPEWHPFKVVMVDGKHKEVI 60
zf-XS pfam03470
XS zinc finger domain; This domain is a putative nucleic acid binding zinc finger found in ...
 32-75 5.51e-17

XS zinc finger domain; This domain is a putative nucleic acid binding zinc finger found in proteins that also contain an XS domain.


:

Pssm-ID: 251981  Cd Length: 43  Bit Score: 74.48  E-value: 5.51e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1063711057  32 CPYCPDNKKKVGLYVDILQHASGVGNSqSKKRSLTEKASHRALA 75
Cdd:pfam03470   1 CPFCPGKKKQDYKYKDLLQHASGVGAS-SNRRSAKEKASHRALA 43
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 250-490 2.50e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 60.34  E-value: 2.50e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 250 AEEEARKDQKLLQRLNFMVENKQYRLKKLQIKYSQdsvkLKYETEEKEKILRAYSEDLTGRQQKStdhfnrifADHEKQK 329
Cdd:COG1196   258 LEAELAELEAELEELRLELEELELELEEAQAEEYE----LLAELARLEQDIARLEERRRELEERL--------EELEEEL 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 330 VQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQLSALEQQKTREKAQRLAVDHKMQKEKLHKRIAAL 409
Cdd:COG1196   326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 410 ERQLDQKQELELEVQQLKSQLSVMRLVELDSGSEIVNKVETFLRDLSETEGELAHLNQFNQDLVVQERKSNDELQEARRA 489
Cdd:COG1196   406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE 485


                  .
gi 1063711057 490 L 490
Cdd:COG1196   486 L 486
 
Name Accession Description Interval E-value
RRM_like_XS cd12266
RNA recognition motif (RRM)-like XS domain found in plants; This XS (named after rice gene X ...
 120-227 6.50e-47

RNA recognition motif (RRM)-like XS domain found in plants; This XS (named after rice gene X and SGS3) domain is a single-stranded RNA-binding domain (RBD) and possesses a unique version of a RNA recognition motif (RRM) fold. It is conserved in a family of plant proteins including gene X and SGS3. Although its function is still unknown, the plant SGS3 proteins are thought to be involved in post-transcriptional gene silencing (PTGS) pathways. In addition, they contain a conserved aspartate residue that may be functionally important.


Pssm-ID: 409710  Cd Length: 107  Bit Score: 159.83  E-value: 6.50e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 120 LVWPWKGVLVNIPTTsTEDGRSCTGESGPKLKDELIRrgFNPIRVRTVWDRFGHSGTGIVEFNRDWNGLQDALVFKKAYE 199
Cdd:cd12266     1 IVWPWMGIVVNTPTT-KDDNRKMEGGSNKELLERLIK--FGPTRVKPLWNPQGHTGTAIVKFNSDWNGFRNALRFEKAFE 77

                          90       100       110
                  ....*....|....*....|....*....|
gi 1063711057 200 GDGHGKKDW--LCGATDSSLYAWLANADDY 227
Cdd:cd12266    78 VDGHGKKDWrnKKGGRKSKLYGWLARADDY 107
XS pfam03468
XS domain; The XS (rice gene X and SGS3) domain is found in a family of plant proteins ...
 118-228 2.43e-45

XS domain; The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X and SGS3. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain has recently been predicted to possess an RRM-like RNA-binding domain by fold recognition.


Pssm-ID: 460933  Cd Length: 113  Bit Score: 155.79  E-value: 2.43e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 118 EKLVWPWKGVLVNIPTTSTEDGRsCTGESGPKLKDELIRrgFNPIRVRTVWDRFGHSGTGIVEFNRDWNGLQDALVFKKA 197
Cdd:pfam03468   2 ELFVWPWMGIVVNIPTEQDEDGR-WVGMSGEELKDKLSR--FNPLKVKPLYGPQGHTGIAIVEFNKDWSGFKNAERFEKH 78

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1063711057 198 YEGDGHGKKDWL---CGATDSSLYAWLANADDYY 228
Cdd:pfam03468  79 FEAQGHGKKDWGgkrNRGSGSKLYGWVARADDYN 112
XH pfam03469
XH domain; The XH (rice gene X Homology) domain is found in a family of plant proteins ...
 504-563 1.82e-21

XH domain; The XH (rice gene X Homology) domain is found in a family of plant proteins including gene X. The molecular function of these proteins is unknown. However these proteins usually contain an XS domain that is also found in the PTGS protein SGS3. This domain contains a conserved glutamate residue that may be functionally important.


Pssm-ID: 460934 [Multi-domain]  Cd Length: 131  Bit Score: 90.34  E-value: 1.82e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 504 KRMGELDTKPFMKAMRIKYCQEDLEDWAVEVIQLWEEYLKDPDWHPFKRIKLETAETIVV 563
Cdd:pfam03469   1 KRMGELDEKPFLNACKQKFSNEEAEVKAAELCSLWEEELKDPEWHPFKVVMVDGKHKEVI 60
zf-XS pfam03470
XS zinc finger domain; This domain is a putative nucleic acid binding zinc finger found in ...
 32-75 5.51e-17

XS zinc finger domain; This domain is a putative nucleic acid binding zinc finger found in proteins that also contain an XS domain.


Pssm-ID: 251981  Cd Length: 43  Bit Score: 74.48  E-value: 5.51e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1063711057  32 CPYCPDNKKKVGLYVDILQHASGVGNSqSKKRSLTEKASHRALA 75
Cdd:pfam03470   1 CPFCPGKKKQDYKYKDLLQHASGVGAS-SNRRSAKEKASHRALA 43
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 250-490 2.50e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 60.34  E-value: 2.50e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 250 AEEEARKDQKLLQRLNFMVENKQYRLKKLQIKYSQdsvkLKYETEEKEKILRAYSEDLTGRQQKStdhfnrifADHEKQK 329
Cdd:COG1196   258 LEAELAELEAELEELRLELEELELELEEAQAEEYE----LLAELARLEQDIARLEERRRELEERL--------EELEEEL 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 330 VQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQLSALEQQKTREKAQRLAVDHKMQKEKLHKRIAAL 409
Cdd:COG1196   326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 410 ERQLDQKQELELEVQQLKSQLSVMRLVELDSGSEIVNKVETFLRDLSETEGELAHLNQFNQDLVVQERKSNDELQEARRA 489
Cdd:COG1196   406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE 485


                  .
gi 1063711057 490 L 490
Cdd:COG1196   486 L 486
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 268-467 4.66e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 49.67  E-value: 4.66e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  268 VENKQYRLKKLQIKYSQDSVKLKYETEEKEKILRAYSEDLTGRQQKSTDHFNRIfADHEKQKVQLESQIKEL-------- 339
Cdd:TIGR02168  780 AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI-AATERRLEDLEEQIEELsediesla 858

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  340 -EIRKLELAKREAENETQR--KIVAKELEQNAAINSYVQLSALEQQKTREKAQRLavdhKMQKEKLHKRIAALERQLdqk 416
Cdd:TIGR02168  859 aEIEELEELIEELESELEAllNERASLEEALALLRSELEELSEELRELESKRSEL----RRELEELREKLAQLELRL--- 931

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1063711057  417 QELELEVQQLKSQLSVMRLVELDsgsEIVNKVETFLRDLSETEGELAHLNQ 467
Cdd:TIGR02168  932 EGLEVRIDNLQERLSEEYSLTLE---EAEALENKIEDDEEEARRRLKRLEN 979
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 233-529 3.03e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 47.04  E-value: 3.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 233 LGENLRKMGDLKSIyRFAEEEARKDQKLLQRLNFMVENKQYRLKKLQIKYSQ-DSVKLKYETEEKEKIL---RAYSEDLT 308
Cdd:pfam17380 245 LAEDVTTMTPEYTV-RYNGQTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKmEQERLRQEKEEKAREVerrRKLEEAEK 323

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 309 GRQqKSTDHFNRIFADHEKQKVQLEsqiKELEIRKLELAKREAENETQRKIvakeleqnaainsyvqlsALEQQKTREkA 388
Cdd:pfam17380 324 ARQ-AEMDRQAAIYAEQERMAMERE---RELERIRQEERKRELERIRQEEI------------------AMEISRMRE-L 380

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 389 QRLAVDHKMQKEKLHKRIAALERQLDQKQELELEVQQLKSQLSVMRLVELDSGSEIVNKVET----FLRDLSETEGELAH 464
Cdd:pfam17380 381 ERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEerarEMERVRLEEQERQQ 460

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1063711057 465 -LNQFNQDLVVQERKSNDELQEAR-RALISNLRDMGLHigvKRMGELDTKPFMKAMRIKYCQEDLED 529
Cdd:pfam17380 461 qVERLRQQEEERKRKKLELEKEKRdRKRAEEQRRKILE---KELEERKQAMIEEERKRKLLEKEMEE 524
mukB PRK04863
chromosome partition protein MukB;
252-436 3.55e-04

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 43.79  E-value: 3.55e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  252 EEARKDQKLLQ------------RLNFMVENKQYRLkklqIKYSQDSVKLKYETEEKEKILRAYSEDLTGRQQKSTDhFN 319
Cdd:PRK04863   945 QQAQQTQRDAKqqafaltevvqrRAHFSYEDAAEML----AKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQ-YN 1019

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  320 RIFADHEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQLSALEQQKTREKAQRlavdhkmqk 399
Cdd:PRK04863  1020 QVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEM--------- 1090

                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 1063711057  400 EKLHKRIAALERqlDQKQELELEVQQLKSQLSVMRLV 436
Cdd:PRK04863  1091 DNLTKKLRKLER--DYHEMREQVVNAKAGWCAVLRLV 1125
 
Name Accession Description Interval E-value
RRM_like_XS cd12266
RNA recognition motif (RRM)-like XS domain found in plants; This XS (named after rice gene X ...
 120-227 6.50e-47

RNA recognition motif (RRM)-like XS domain found in plants; This XS (named after rice gene X and SGS3) domain is a single-stranded RNA-binding domain (RBD) and possesses a unique version of a RNA recognition motif (RRM) fold. It is conserved in a family of plant proteins including gene X and SGS3. Although its function is still unknown, the plant SGS3 proteins are thought to be involved in post-transcriptional gene silencing (PTGS) pathways. In addition, they contain a conserved aspartate residue that may be functionally important.


Pssm-ID: 409710  Cd Length: 107  Bit Score: 159.83  E-value: 6.50e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 120 LVWPWKGVLVNIPTTsTEDGRSCTGESGPKLKDELIRrgFNPIRVRTVWDRFGHSGTGIVEFNRDWNGLQDALVFKKAYE 199
Cdd:cd12266     1 IVWPWMGIVVNTPTT-KDDNRKMEGGSNKELLERLIK--FGPTRVKPLWNPQGHTGTAIVKFNSDWNGFRNALRFEKAFE 77

                          90       100       110
                  ....*....|....*....|....*....|
gi 1063711057 200 GDGHGKKDW--LCGATDSSLYAWLANADDY 227
Cdd:cd12266    78 VDGHGKKDWrnKKGGRKSKLYGWLARADDY 107
XS pfam03468
XS domain; The XS (rice gene X and SGS3) domain is found in a family of plant proteins ...
 118-228 2.43e-45

XS domain; The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X and SGS3. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain has recently been predicted to possess an RRM-like RNA-binding domain by fold recognition.


Pssm-ID: 460933  Cd Length: 113  Bit Score: 155.79  E-value: 2.43e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 118 EKLVWPWKGVLVNIPTTSTEDGRsCTGESGPKLKDELIRrgFNPIRVRTVWDRFGHSGTGIVEFNRDWNGLQDALVFKKA 197
Cdd:pfam03468   2 ELFVWPWMGIVVNIPTEQDEDGR-WVGMSGEELKDKLSR--FNPLKVKPLYGPQGHTGIAIVEFNKDWSGFKNAERFEKH 78

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1063711057 198 YEGDGHGKKDWL---CGATDSSLYAWLANADDYY 228
Cdd:pfam03468  79 FEAQGHGKKDWGgkrNRGSGSKLYGWVARADDYN 112
XH pfam03469
XH domain; The XH (rice gene X Homology) domain is found in a family of plant proteins ...
 504-563 1.82e-21

XH domain; The XH (rice gene X Homology) domain is found in a family of plant proteins including gene X. The molecular function of these proteins is unknown. However these proteins usually contain an XS domain that is also found in the PTGS protein SGS3. This domain contains a conserved glutamate residue that may be functionally important.


Pssm-ID: 460934 [Multi-domain]  Cd Length: 131  Bit Score: 90.34  E-value: 1.82e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 504 KRMGELDTKPFMKAMRIKYCQEDLEDWAVEVIQLWEEYLKDPDWHPFKRIKLETAETIVV 563
Cdd:pfam03469   1 KRMGELDEKPFLNACKQKFSNEEAEVKAAELCSLWEEELKDPEWHPFKVVMVDGKHKEVI 60
zf-XS pfam03470
XS zinc finger domain; This domain is a putative nucleic acid binding zinc finger found in ...
 32-75 5.51e-17

XS zinc finger domain; This domain is a putative nucleic acid binding zinc finger found in proteins that also contain an XS domain.


Pssm-ID: 251981  Cd Length: 43  Bit Score: 74.48  E-value: 5.51e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1063711057  32 CPYCPDNKKKVGLYVDILQHASGVGNSqSKKRSLTEKASHRALA 75
Cdd:pfam03470   1 CPFCPGKKKQDYKYKDLLQHASGVGAS-SNRRSAKEKASHRALA 43
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 250-490 2.50e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 60.34  E-value: 2.50e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 250 AEEEARKDQKLLQRLNFMVENKQYRLKKLQIKYSQdsvkLKYETEEKEKILRAYSEDLTGRQQKStdhfnrifADHEKQK 329
Cdd:COG1196   258 LEAELAELEAELEELRLELEELELELEEAQAEEYE----LLAELARLEQDIARLEERRRELEERL--------EELEEEL 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 330 VQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQLSALEQQKTREKAQRLAVDHKMQKEKLHKRIAAL 409
Cdd:COG1196   326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 410 ERQLDQKQELELEVQQLKSQLSVMRLVELDSGSEIVNKVETFLRDLSETEGELAHLNQFNQDLVVQERKSNDELQEARRA 489
Cdd:COG1196   406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE 485


                  .
gi 1063711057 490 L 490
Cdd:COG1196   486 L 486
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 247-496 3.29e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 59.95  E-value: 3.29e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 247 YRFAEEEARKDQKLLQRLNFMVENKQYRLKKLQIKYSQDSVKLKYETEEKEKILRAYSEDLT--GRQQKSTDHFNRIFAD 324
Cdd:COG1196   234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAelARLEQDIARLEERRRE 313

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 325 HEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQLSALEQQKTREKAQRLAVDHKMQKEKLHK 404
Cdd:COG1196   314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 405 RIAALERQLDQKQELELEVQQLKSQLSVMRLVELDSGSEIVNKVETFLRDLSETEGELAHLNQFNQDLVVQERKSNDELQ 484
Cdd:COG1196   394 AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473

                         250
                  ....*....|..
gi 1063711057 485 EARRALISNLRD 496
Cdd:COG1196   474 LLEAALAELLEE 485
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 328-495 2.16e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 50.71  E-value: 2.16e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 328 QKVQLESQIKELEIRKLELAKREAE-NETQRKIVAKELEQNAAINSYVQLSA-LEQQKTREKAQRLAVDHKMQKE-KLHK 404
Cdd:COG1196   216 RELKEELKELEAELLLLKLRELEAElEELEAELEELEAELEELEAELAELEAeLEELRLELEELELELEEAQAEEyELLA 295

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 405 RIAALERQLD----QKQELELEVQQLKSQLSVMRLVELDSGSEIVNKVETFLRDLSETEGELAHLNQFNQDLVVQERKSN 480
Cdd:COG1196   296 ELARLEQDIArleeRRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375

                         170
                  ....*....|....*
gi 1063711057 481 DELQEARRALISNLR 495
Cdd:COG1196   376 EAEEELEELAEELLE 390
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 268-467 4.66e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 49.67  E-value: 4.66e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  268 VENKQYRLKKLQIKYSQDSVKLKYETEEKEKILRAYSEDLTGRQQKSTDHFNRIfADHEKQKVQLESQIKEL-------- 339
Cdd:TIGR02168  780 AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI-AATERRLEDLEEQIEELsediesla 858

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  340 -EIRKLELAKREAENETQR--KIVAKELEQNAAINSYVQLSALEQQKTREKAQRLavdhKMQKEKLHKRIAALERQLdqk 416
Cdd:TIGR02168  859 aEIEELEELIEELESELEAllNERASLEEALALLRSELEELSEELRELESKRSEL----RRELEELREKLAQLELRL--- 931

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1063711057  417 QELELEVQQLKSQLSVMRLVELDsgsEIVNKVETFLRDLSETEGELAHLNQ 467
Cdd:TIGR02168  932 EGLEVRIDNLQERLSEEYSLTLE---EAEALENKIEDDEEEARRRLKRLEN 979
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
324-496 8.98e-06

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 48.76  E-value: 8.98e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  324 DHEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYV-----------QLSALEQQKTREKAQRLA 392
Cdd:COG4913    607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSwdeidvasaerEIAELEAELERLDASSDD 686

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  393 VDH-KMQKEKLHKRIAALERQLDQKQE----LELEVQQLKSQLSVMRLVELDSGSEIVNKVETFLRDLSETEGELAHLNQ 467
Cdd:COG4913    687 LAAlEEQLEELEAELEELEEELDELKGeigrLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERE 766

                          170       180
                   ....*....|....*....|....*....
gi 1063711057  468 FNQDLVVQERKSNDELQEARRALISNLRD 496
Cdd:COG4913    767 LRENLEERIDALRARLNRAEEELERAMRA 795
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 323-498 1.31e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 48.51  E-value: 1.31e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  323 ADHEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQ-----NAAINSYVQLSALEQQKTREKAQ------RL 391
Cdd:TIGR02168  680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEElsrqiSALRKDLARLEAEVEQLEERIAQlskeltEL 759

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  392 AVDHKMQKEKLHKRIAALERQLDQKQELELEVQQLKSQLSVMRLvELDSGSEIVNKVETFLRDLSETEGELAHLNQFNQD 471
Cdd:TIGR02168  760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE-ALDELRAELTLLNEEAANLRERLESLERRIAATER 838

                          170       180
                   ....*....|....*....|....*..
gi 1063711057  472 LVVQERKSNDELQEARRALISNLRDMG 498
Cdd:TIGR02168  839 RLEDLEEQIEELSEDIESLAAEIEELE 865
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 245-500 2.43e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 47.36  E-value: 2.43e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  245 SIYRFAEEEARKdqKL------LQRLNFMVE--NKQYRLKKLQIKYSQDSVKLKYETEEKEKILraysedltgrqqkSTD 316
Cdd:TIGR02168  168 SKYKERRKETER--KLertrenLDRLEDILNelERQLKSLERQAEKAERYKELKAELRELELAL-------------LVL 232

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  317 HFNrifaDHEKQKVQLESQIKELEIRKLELAKREAENETQrkivakeLEQNAAINSYVQLSALEQQKTREKAQRLAVDHK 396
Cdd:TIGR02168  233 RLE----ELREELEELQEELKEAEEELEELTAELQELEEK-------LEELRLEVSELEEEIEELQKELYALANEISRLE 301

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  397 MQKEKLHKRIAALERQLdqkQELELEVQQLKSQlsvmRLVELDSGSEIVNKVETFLRDLSETEGELAHLNQFNQDLVVQE 476
Cdd:TIGR02168  302 QQKQILRERLANLERQL---EELEAQLEELESK----LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL 374

                          250       260
                   ....*....|....*....|....
gi 1063711057  477 RKSNDELQEARRALISNLRDMGLH 500
Cdd:TIGR02168  375 EELEEQLETLRSKVAQLELQIASL 398
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
288-495 2.61e-05

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 47.32  E-value: 2.61e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 288 KLKYETEEKEKILRAYsedltgRQQkstdhfNRIFaDHEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQN 367
Cdd:COG3206   186 ELRKELEEAEAALEEF------RQK------NGLV-DLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSG 252

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 368 AAINSYV-----------QLSALEQQKTrEKAQRLAVDH-KMQkeKLHKRIAALERQLDQ-----KQELELEVQQLKSQL 430
Cdd:COG3206   253 PDALPELlqspviqqlraQLAELEAELA-ELSARYTPNHpDVI--ALRAQIAALRAQLQQeaqriLASLEAELEALQARE 329

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1063711057 431 SVMRlveldsgsEIVNKVETFLRDLSETEGELAHLN---QFNQDLVVQERKSNDELQEARRALISNLR 495
Cdd:COG3206   330 ASLQ--------AQLAQLEARLAELPELEAELRRLErevEVARELYESLLQRLEEARLAEALTVGNVR 389
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 233-529 3.03e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 47.04  E-value: 3.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 233 LGENLRKMGDLKSIyRFAEEEARKDQKLLQRLNFMVENKQYRLKKLQIKYSQ-DSVKLKYETEEKEKIL---RAYSEDLT 308
Cdd:pfam17380 245 LAEDVTTMTPEYTV-RYNGQTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKmEQERLRQEKEEKAREVerrRKLEEAEK 323

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 309 GRQqKSTDHFNRIFADHEKQKVQLEsqiKELEIRKLELAKREAENETQRKIvakeleqnaainsyvqlsALEQQKTREkA 388
Cdd:pfam17380 324 ARQ-AEMDRQAAIYAEQERMAMERE---RELERIRQEERKRELERIRQEEI------------------AMEISRMRE-L 380

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 389 QRLAVDHKMQKEKLHKRIAALERQLDQKQELELEVQQLKSQLSVMRLVELDSGSEIVNKVET----FLRDLSETEGELAH 464
Cdd:pfam17380 381 ERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEerarEMERVRLEEQERQQ 460

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1063711057 465 -LNQFNQDLVVQERKSNDELQEAR-RALISNLRDMGLHigvKRMGELDTKPFMKAMRIKYCQEDLED 529
Cdd:pfam17380 461 qVERLRQQEEERKRKKLELEKEKRdRKRAEEQRRKILE---KELEERKQAMIEEERKRKLLEKEMEE 524
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 269-490 5.75e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 45.53  E-value: 5.75e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 269 ENKQYRLKKLQIKYSQDSVKLKYETEEKEKILRAYSEdltgrQQKSTDHFNRIFADHEKQKVQLESQIKELEIRKLELAK 348
Cdd:COG4942    23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAA-----LERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 349 REAEnetQRKIVAKELEQNAAINSYVQLSALEQQKTREKAQRLAVDHKMQKEKLHKRIAALERQLDQKQELELEVQQLKS 428
Cdd:COG4942    98 ELEA---QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1063711057 429 QLSVMRLVELDSGSEIVNKVETFLRDLSETEGELAHLNQFNQDLVVQERKSNDELQEARRAL 490
Cdd:COG4942   175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 227-427 1.05e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 45.43  E-value: 1.05e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  227 YYRANILGENLRKMgdlKSIYRFAEEEARKDQK----LLQRLNFMVENKQYRLKKLQIKYSQDSVKLKyETEEKEKILRA 302
Cdd:TIGR02168  290 LYALANEISRLEQQ---KQILRERLANLERQLEeleaQLEELESKLDELAEELAELEEKLEELKEELE-SLEAELEELEA 365

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  303 YSEDLTGRQQKSTDH---FNRIFADHEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQLSAL 379
Cdd:TIGR02168  366 ELEELESRLEELEEQletLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEEL 445

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1063711057  380 EQ-------------------QKTREKAQRLAVDHKMQKEKLHKRIAALERQLDQKQELELEVQQLK 427
Cdd:TIGR02168  446 EEeleelqeelerleealeelREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALL 512
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
297-490 2.37e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 43.99  E-value: 2.37e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 297 EKILRAYSEDLTGRQQKSTDHFNRIFADHEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQL 376
Cdd:COG4717    48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 377 SALEQQKTREKAQRLAVDHKMqkEKLHKRIAALERQLDQKQELELEVQQLKSQLSvmRLVELDSgSEIVNKVETFLRDLS 456
Cdd:COG4717   128 LPLYQELEALEAELAELPERL--EELEERLEELRELEEELEELEAELAELQEELE--ELLEQLS-LATEEELQDLAEELE 202

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1063711057 457 ETEGELAHLNQfnqdlvvQERKSNDELQEARRAL 490
Cdd:COG4717   203 ELQQRLAELEE-------ELEEAQEELEELEEEL 229
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 239-425 2.56e-04

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 43.67  E-value: 2.56e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 239 KMGDLKSIYRFAEEEARKDQKLLQRLNFMVENKQYRLKKLQikysQDSVKLKYETEEKEKILRAYSEDLTGR---QQKS- 314
Cdd:COG3883    24 ELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQ----AEIDKLQAEIAEAEAEIEERREELGERaraLYRSg 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 315 ----------------------------TDHFNRIFADHEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQ 366
Cdd:COG3883   100 gsvsyldvllgsesfsdfldrlsalskiADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAE 179

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1063711057 367 NAAInsYVQLSALEQQKTREKAQRLAvdhkmQKEKLHKRIAALERQLDQKQELELEVQQ 425
Cdd:COG3883   180 QEAL--LAQLSAEEAAAEAQLAELEA-----ELAAAEAAAAAAAAAAAAAAAAAAAAAA 231
mukB PRK04863
chromosome partition protein MukB;
252-436 3.55e-04

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 43.79  E-value: 3.55e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  252 EEARKDQKLLQ------------RLNFMVENKQYRLkklqIKYSQDSVKLKYETEEKEKILRAYSEDLTGRQQKSTDhFN 319
Cdd:PRK04863   945 QQAQQTQRDAKqqafaltevvqrRAHFSYEDAAEML----AKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQ-YN 1019

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  320 RIFADHEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQLSALEQQKTREKAQRlavdhkmqk 399
Cdd:PRK04863  1020 QVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEM--------- 1090

                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 1063711057  400 EKLHKRIAALERqlDQKQELELEVQQLKSQLSVMRLV 436
Cdd:PRK04863  1091 DNLTKKLRKLER--DYHEMREQVVNAKAGWCAVLRLV 1125
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 235-425 4.37e-04

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 43.19  E-value: 4.37e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 235 ENLRKMGDLKSIYRFAEEEARKDQKLLQRLNFMVENKQYRLKKLQIKYSQDSVKLKYETEEKEKILRAYSEDLTgRQQKS 314
Cdd:pfam17380 392 ERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERL-RQQEE 470

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 315 TDHFNRIFADHEKQKVQLESQIKELEIRKLELAKREA--ENETQRKIVAKELE--QNAAINSYVQLSALEQQKT-REKAQ 389
Cdd:pfam17380 471 ERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAmiEEERKRKLLEKEMEerQKAIYEEERRREAEEERRKqQEMEE 550

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1063711057 390 RLAVDHKMQKEKLHK-RIAALERQLD-QKQELELEVQQ 425
Cdd:pfam17380 551 RRRIQEQMRKATEERsRLEAMEREREmMRQIVESEKAR 588
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 229-488 5.06e-04

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 43.19  E-value: 5.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 229 RANILGENLR-KMGDLKSIYRFAEEEARKDQKLLQRLNFMVENKQYR-LKKLQIKYSQDSVKLKYETE--EKEKILRAYs 304
Cdd:pfam17380 332 QAAIYAEQERmAMERERELERIRQEERKRELERIRQEEIAMEISRMReLERLQMERQQKNERVRQELEaaRKVKILEEE- 410

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 305 edltgRQQKSTDHFNrifadhEKQKVQLESQ-IKELEIRKLElAKREAENETQRKivaKELEQNAainsyvQLSALEQQK 383
Cdd:pfam17380 411 -----RQRKIQQQKV------EMEQIRAEQEeARQREVRRLE-EERAREMERVRL---EEQERQQ------QVERLRQQE 469

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 384 TREKAQRLavdhKMQKEKLHKRIAALERQLDQKQELELEVQQLKSQLSVMRLVEldsgseivnkvetflRDLSETEGELA 463
Cdd:pfam17380 470 EERKRKKL----ELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLE---------------KEMEERQKAIY 530

                         250       260
                  ....*....|....*....|....*
gi 1063711057 464 HLNQfnQDLVVQERKSNDELQEARR 488
Cdd:pfam17380 531 EEER--RREAEEERRKQQEMEERRR 553
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
 250-496 1.00e-03

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 42.35  E-value: 1.00e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  250 AEEEARKDQKLLQrlNFMVENKQYRLKKLQIKYSQDSVKLKYETEEKE-KILRAYSE--DLTGRQQKSTDHFNRIfADHE 326
Cdd:PRK10929    63 SLERAKQYQQVID--NFPKLSAELRQQLNNERDEPRSVPPNMSTDALEqEILQVSSQllEKSRQAQQEQDRAREI-SDSL 139

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  327 KQKVQLESQIK----ELEIR------------KLELAKREAENeTQRKIVAKELEqnaainsYVQLSAleqqKTREKAQR 390
Cdd:PRK10929   140 SQLPQQQTEARrqlnEIERRlqtlgtpntplaQAQLTALQAES-AALKALVDELE-------LAQLSA----NNRQELAR 207

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  391 LAVDhkmqkekLHKRiaalerqldQKQELELEVQQLKSQLSVMRLVELDSGSEIVNKVE-------TFLRDLSETEGEL- 462
Cdd:PRK10929   208 LRSE-------LAKK---------RSQQLDAYLQALRNQLNSQRQREAERALESTELLAeqsgdlpKSIVAQFKINRELs 271

                          250       260       270
                   ....*....|....*....|....*....|....*..
gi 1063711057  463 AHLNQFNQ--DLVV-QERKSNDELQEARRALiSNLRD 496
Cdd:PRK10929   272 QALNQQAQrmDLIAsQQRQAASQTLQVRQAL-NTLRE 307
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
225-429 1.17e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 41.82  E-value: 1.17e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  225 DDYYRANIL-----GENLRKM----GDLKSIYRfAEEEARKDQKLLQRLnfmVENKQyRLKKLQIKYS-QDSVKLK---Y 291
Cdd:COG4913    210 DDFVREYMLeepdtFEAADALvehfDDLERAHE-ALEDAREQIELLEPI---RELAE-RYAAARERLAeLEYLRAAlrlW 284

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  292 ETEEKEKILRAYSEDLTGRQQKSTDHFNRI---FADHEKQKVQLESQIKELEIRKLELAKRE-AENETQRKIVAKELEQN 367
Cdd:COG4913    285 FAQRRLELLEAELEELRAELARLEAELERLearLDALREELDELEAQIRGNGGDRLEQLEREiERLERELEERERRRARL 364

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  368 ----AAINSYVQLSALEQQKTREKAQRLAVDHKMQKEKLHKRIAALERQL----DQKQELELEVQQLKSQ 429
Cdd:COG4913    365 eallAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALrdlrRELRELEAEIASLERR 434
COG5022 COG5022
Myosin heavy chain [General function prediction only];
254-513 2.07e-03

Myosin heavy chain [General function prediction only];


Pssm-ID: 227355 [Multi-domain]  Cd Length: 1463  Bit Score: 41.22  E-value: 2.07e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  254 ARKDQKLLQRLnfMVENKQYRLKKLQIKYSQDsVKLK--YETEEKEKILRAYSEDLTGRQQKStdhfnrifadhEKQKVQ 331
Cdd:COG5022    767 ALKRIKKIQVI--QHGFRLRRLVDYELKWRLF-IKLQplLSLLGSRKEYRSYLACIIKLQKTI-----------KREKKL 832

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  332 LESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQLSALEQQKTREKAQRLAVDH-KMQKEKLHKRIAALE 410
Cdd:COG5022    833 RETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSlKLVNLELESEIIELK 912

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  411 RQLDQ--------KQELELEVQQL--KSQLSVMRLVELDSgSEIVNKVETFLRDLSETEGELAHLNQFNQDLVVQERKSN 480
Cdd:COG5022    913 KSLSSdlienlefKTELIARLKKLlnNIDLEEGPSIEYVK-LPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKAN 991

                          250       260       270
                   ....*....|....*....|....*....|....
gi 1063711057  481 DELQEARRALISNLRD-MGLHIGVKRMGELDTKP 513
Cdd:COG5022    992 SELKNFKKELAELSKQyGALQESTKQLKELPVEV 1025
PTZ00121 PTZ00121
MAEBL; Provisional
 230-413 2.21e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.28  E-value: 2.21e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  230 ANILGENLRKMGDLK----SIYRFAEEEARKDQKLLQrlnfmvENKQYRLKKLQIKYSQDSVKLKYETEEKEKILRAYSE 305
Cdd:PTZ00121  1618 AKIKAEELKKAEEEKkkveQLKKKEAEEKKKAEELKK------AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAA 1691

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  306 DLTGRQQKSTDHFNRIFADHEKQKVQLESQIKELEIR--KLELAKREAENETQRKIVAKELEQNAaiNSYVQLSALEQQK 383
Cdd:PTZ00121  1692 EALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENkiKAEEAKKEAEEDKKKAEEAKKDEEEK--KKIAHLKKEEEKK 1769

                          170       180       190
                   ....*....|....*....|....*....|.
gi 1063711057  384 TRE-KAQRLAVDHKMQKEKLHKRIAALERQL 413
Cdd:PTZ00121  1770 AEEiRKEKEAVIEEELDEEDEKRRMEVDKKI 1800
PTZ00491 PTZ00491
major vault protein; Provisional
 328-449 2.57e-03

major vault protein; Provisional


Pssm-ID: 240439 [Multi-domain]  Cd Length: 850  Bit Score: 40.77  E-value: 2.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 328 QKVQLESQIK-ELEIRKLelaKREAENETQRKIVAKELEQNAAINSyvQLSALEQQKTREKAQRLAVDHKMQKEKLhkRI 406
Cdd:PTZ00491  671 QAELLEQEARgRLERQKM---HDKAKAEEQRTKLLELQAESAAVES--SGQSRAEALAEAEARLIEAEAEVEQAEL--RA 743

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1063711057 407 AALE-------RQLDQKQELELEVQQLKSQLSVMRLVELdsgSEI-VNKVE 449
Cdd:PTZ00491  744 KALRieaeaelEKLRKRQELELEYEQAQNELEIAKAKEL---ADIeATKFE 791
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
297-454 2.63e-03

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 40.61  E-value: 2.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 297 EKILRAYSEDLTGRQQKSTDHFNRIFADHEKQKVQLESQIKELEIRKLELakrEAENETQRKIVAkELEQnaainsyvQL 376
Cdd:COG2433   383 EELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEEL---EAELEEKDERIE-RLER--------EL 450

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 377 SaLEQQKTREKAQRlavDHKMQkeKLHKRIAALERQLDQKQElelEVQQLKSQLSVMR-LVELDSGSE--IVNKVETFLR 453
Cdd:COG2433   451 S-EARSEERREIRK---DREIS--RLDREIERLERELEEERE---RIEELKRKLERLKeLWKLEHSGElvPVKVVEKFTK 521


                  .
gi 1063711057 454 D 454
Cdd:COG2433   522 E 522
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 233-420 3.84e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 39.75  E-value: 3.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 233 LGENLRKMGDLKSIYRFAEEEARKDQKLLQRLNFMVENKQYRLKKLQIKYSQDSVKLKYETEEKEKILRAYSedLTGRQ- 311
Cdd:COG4942    43 LAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALY--RLGRQp 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 312 -------QKSTDHFNRIFADHEKQKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQLSALEQQKT 384
Cdd:COG4942   121 plalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKL 200

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1063711057 385 REKAQRLAVDHKMQKEKLHKRIAALERQLDQKQELE 420
Cdd:COG4942   201 LARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 243-496 5.19e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 39.62  E-value: 5.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 243 LKSIYRFAEEEARKDQKLLQRLNFMVENKQYRLKKLQiKYSQDSVKLKYETEEKEKILRAYSEDLTGRQQKSTDHFNRIF 322
Cdd:TIGR04523  24 YKNIANKQDTEEKQLEKKLKTIKNELKNKEKELKNLD-KNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLN 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 323 ADHEK----------QKVQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYV--QLSALEQQKTREKAQR 390
Cdd:TIGR04523 103 SDLSKinseikndkeQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLkkQKEELENELNLLEKEK 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 391 LAVDHKMQK-----EKLHKRIAALERQLDQKQELELEVQQLKSQLSVMRLVELDSGSEIVNKVEtflrDLSETEGELAHL 465
Cdd:TIGR04523 183 LNIQKNIDKiknklLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTT----EISNTQTQLNQL 258

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1063711057 466 NQFNQDLVVQERKSNDELQEARRaLISNLRD 496
Cdd:TIGR04523 259 KDEQNKIKKQLSEKQKELEQNNK-KIKELEK 288
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
 276-431 5.55e-03

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 39.77  E-value: 5.55e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  276 KKLQIKYSQDSVKLKYETEEKEKILRAYSEDLTGRQQKSTDHFN-------RIFADHEKQKVQLESQIKELEIRKLELAK 348
Cdd:pfam01576  319 QELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTeqleqakRNKANLEKAKQALESENAELQAELRTLQQ 398

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  349 REAENETQRKIVAKELEQnaainsyvqLSALEQQKTREKAQRLAVDHKMQKE----------------KLHKRIAALERQ 412
Cdd:pfam01576  399 AKQDSEHKRKKLEGQLQE---------LQARLSESERQRAELAEKLSKLQSElesvssllneaegkniKLSKDVSSLESQ 469

                          170
                   ....*....|....*....
gi 1063711057  413 LDQKQELELEVQQLKSQLS 431
Cdd:pfam01576  470 LQDTQELLQEETRQKLNLS 488
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
 262-546 5.85e-03

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 39.64  E-value: 5.85e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  262 QRLNFMVENKQYRLKK------LQIKYSQDSVK----LKYETEEKEKILRAYSEDLTGRQQ---------KSTDHFNRIF 322
Cdd:TIGR00606  825 QQVNQEKQEKQHELDTvvskieLNRKLIQDQQEqiqhLKSKTNELKSEKLQIGTNLQRRQQfeeqlvelsTEVQSLIREI 904

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  323 ADHEKQKVQLESQIKELEIRKLELAKREaenETQRKIVAKELEQnaaINSYVQLSALEQQKTREKAQRLAVDHKMQKE-K 401
Cdd:TIGR00606  905 KDAKEQDSPLETFLEKDQQEKEELISSK---ETSNKKAQDKVND---IKEKVKNIHGYMKDIENKIQDGKDDYLKQKEtE 978

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  402 LHKRIAALERQLDQKQELELEVQQLKSQLSVMRLVELDSGSEIV-NKVETFLRDLSETEGElaHLNQFNQDLVVQERKSN 480
Cdd:TIGR00606  979 LNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTlRKRENELKEVEEELKQ--HLKEMGQMQVLQMKQEH 1056

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1063711057  481 DELQEARRALisnLRDMGLHIGVKRMGELDTKPFMKAMRIKYCQEDLEDW--AVEVIQLWEEYLKDPD 546
Cdd:TIGR00606 1057 QKLEENIDLI---KRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYreMMIVMRTTELVNKDLD 1121
PTZ00121 PTZ00121
MAEBL; Provisional
 235-491 8.33e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 39.35  E-value: 8.33e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  235 ENLRKMGDLKSIYRFAEEEARKDqkllqrlnfMVENKQYRLKKLQIKYSQDSVKLkYETEEKEKILRAYSEdltgrqqks 314
Cdd:PTZ00121  1555 EELKKAEEKKKAEEAKKAEEDKN---------MALRKAEEAKKAEEARIEEVMKL-YEEEKKMKAEEAKKA--------- 1615

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  315 tdhfnrifadhEKQKVQLESQIKELEIRKL--ELAKREAENETQRKIVAKELEQNAAINSYVQLSALEQQKTREKAQRLA 392
Cdd:PTZ00121  1616 -----------EEAKIKAEELKKAEEEKKKveQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAE 1684

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057  393 VDHKMQKEKLhKRIAALERQLDQKQELELEVQQLKSQLSVMRLVELDSGSEIVNKVETFLRDLSETEGELAHLNQFNQdL 472
Cdd:PTZ00121  1685 EDEKKAAEAL-KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAH-L 1762

                          250
                   ....*....|....*....
gi 1063711057  473 VVQERKSNDELQEARRALI 491
Cdd:PTZ00121  1763 KKEEEKKAEEIRKEKEAVI 1781
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
 251-479 9.32e-03

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 38.93  E-value: 9.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 251 EEEARKDQKLLQrlnfmvENKQYR-----LKKLQIKYSQDSVKLKYETEEKEKILRayseDLTGRQQKSTDHFNRIFADH 325
Cdd:pfam05483 137 EEEIQENKDLIK------ENNATRhlcnlLKETCARSAEKTKKYEYEREETRQVYM----DLNNNIEKMILAFEELRVQA 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 326 EKQKVQLESQIKE--LEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQLSALEQQkTREKAQRLAVDHKMQKEKLH 403
Cdd:pfam05483 207 ENARLEMHFKLKEdhEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEE-SRDKANQLEEKTKLQDENLK 285

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1063711057 404 KRIaalERQLDQKQELELEVQQLKSQLSVMRLVELDsgSEIVNKVETFLRDLSETEGELAHLNQFNQDLVVQERKS 479
Cdd:pfam05483 286 ELI---EKKDHLTKELEDIKMSLQRSMSTQKALEED--LQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEA 356
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
243-489 9.67e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 38.89  E-value: 9.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 243 LKSIYRFAEEEARKDQKLLQRlnfmVENKQYRLKKLQIKYSQDSVKLKyETEEKEKILRAYSEDLTGRQQKSTDHFNRI- 321
Cdd:PRK03918  167 LGEVIKEIKRRIERLEKFIKR----TENIEELIKEKEKELEEVLREIN-EISSELPELREELEKLEKEVKELEELKEEIe 241

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 322 -----FADHEKQKVQLESQIKELEIRKLELAKREAENETQRKIVaKELEQNAaiNSYVQLSALeQQKTREKAQRLavdhK 396
Cdd:PRK03918  242 elekeLESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL-KELKEKA--EEYIKLSEF-YEEYLDELREI----E 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 397 MQKEKLHKRIAALERQLDQKQELELEVQQLKSqlsvmRLVELDsgsEIVNKVETFLRDLSETEGELAHLNQFNQDLVVQE 476
Cdd:PRK03918  314 KRLSRLEEEINGIEERIKELEEKEERLEELKK-----KLKELE---KRLEELEERHELYEEAKAKKEELERLKKRLTGLT 385

                         250
                  ....*....|....
gi 1063711057 477 -RKSNDELQEARRA 489
Cdd:PRK03918  386 pEKLEKELEELEKA 399
PRK12704 PRK12704
phosphodiesterase; Provisional
 250-420 9.73e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 38.61  E-value: 9.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 250 AEEEARKDQKLLQrlnfmvenKQYRLKKLQIKYSQDSVKLKYETEEKEKILRAYSEDLTGRQQkstdhfnrifaDHEKQK 329
Cdd:PRK12704   49 KEAEAIKKEALLE--------AKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLE-----------LLEKRE 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711057 330 VQLESQIKELEIRKLELAKREAENETQRKIVAKELEqnaainsyvQLSALeqqkTREKAQRLAVDhKMqKEKLHKRIAAL 409
Cdd:PRK12704  110 EELEKKEKELEQKQQELEKKEEELEELIEEQLQELE---------RISGL----TAEEAKEILLE-KV-EEEARHEAAVL 174

                         170
                  ....*....|.
gi 1063711057 410 ERQLDQKQELE 420
Cdd:PRK12704  175 IKEIEEEAKEE 185
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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