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Conserved domains on  [gi|1063705519|ref|NP_001324564|]
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FAR1-related sequence 2 [Arabidopsis thaliana]

Protein Classification

FHY3/FAR1 family protein( domain architecture ID 1001808)

FHY3/FAR1 family protein similar to FAR-RED ELONGATED HYPOCOTYL 3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) which are transcription factors that play multiple roles in a wide range of cellular processes and are crucial for plant growth and development, and to transposases of the Mutator-like element (MULE)

Gene Ontology:  GO:0003677
PubMed:  15591448

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
FHY3 super family cl31971
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 40-799 0e+00

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


The actual alignment was detected with superfamily member PLN03097:

Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 715.23  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519  40 NGMDFESKEAAYYFYREYARSVGFGITIKASRRSKRSGKFIDVKIACSRFGTKREKATAIN----------P------RS 103
Cdd:PLN03097   76 SGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNrprarqtkqdPengtgrRS 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 104 CPKTGCKAGLHMKRKEDEKWVIYNFVKEHNHEICP----------------DDF--YVSVRG-KNKPAGALaiKKGLQLA 164
Cdd:PLN03097  156 CAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPaqavseqtrkmyaamaRQFaeYKNVVGlKNDSKSSF--DKGRNLG 233

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 165 LEEEDLKLLLEHFMEMQDKQPGFFYAVDFDSDKRVRNVFWLDAKAKHDYCSFSDVVLFDTFYVRNGYRIPFAPFIGVSHH 244
Cdd:PLN03097  234 LEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFDTTYVRNKYKMPLALFVGVNQH 313

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 245 RQYVLLGCALIGEVSESTYSWLFRTWLKAVGGQAPGVMITDQDKLLSDIVVEVFPDVRHIFCLWSVLSKISEMLNPFVSQ 324
Cdd:PLN03097  314 YQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQ 393

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 325 DDGFMESFGNCVASSWTDEHFERRWSNMIGKFELNENEWVQLLFRDRKKWVPHYFHGICLAGLSGPERSGSIASHFDKYM 404
Cdd:PLN03097  394 HENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYV 473

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 405 NSEATFKDFFELYMKFLQYRCDVEAKDDLEYQSKQPTLRSSLAFEKQLSLIYTDAAFKKFQAEVPGVVSCQLQKEREDGT 484
Cdd:PLN03097  474 HKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPKMESQDET 553

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 485 TAIFRIEDFEERQNFFVALNNELLDACCSCHLFEYQGFLCKHAILVLQSADVSRVPSQYILKRWSKKGNNKEDKNDKCAT 564
Cdd:PLN03097  554 SITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWTKDAKSRHLLGEESEQ 633

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 565 IDNRMARFDDLCRRFVKLGVVASLSDEACKTALKLLEETVKHCVSMDNSSKfpSEPDkLMTGGSIGLenegvldcaskvs 644
Cdd:PLN03097  634 VQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRALEEAFGNCISMNNSNK--SLVE-AGTSPTHGL------------- 697

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 645 kkkkiqkkrkvYCGPEDATNRS-EELRQETEQVSSRAPTFENCYIPQANMEE----PELGSRATTLGVYYSTQQTNQGFP 719
Cdd:PLN03097  698 -----------LCIEDDNQSRSmTKTNKKKNPTKKRKVNSEQEVTTVAAQDSlqqmDKLSSRAVALESYYGTQQSVQGMV 766

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 720 SISSI---QNGYYGHPPTIQAMGNLHSI---HErmSQYETQPSMQGafQGQTGFRGSAIRGCYDIEEtlhDMTMGSSQFQ 793
Cdd:PLN03097  767 QLNLMaptRDNYYGNQQTIQGLGQLNSIapsHD--GYYGTQQSIHG--LGQMDFFRTPAGFSYDIRD---DPNVRTAQLH 839


                  ....*.
gi 1063705519 794 GSDSSH 799
Cdd:PLN03097  840 DDASRH 845
 
Name Accession Description Interval E-value
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 40-799 0e+00

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 715.23  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519  40 NGMDFESKEAAYYFYREYARSVGFGITIKASRRSKRSGKFIDVKIACSRFGTKREKATAIN----------P------RS 103
Cdd:PLN03097   76 SGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNrprarqtkqdPengtgrRS 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 104 CPKTGCKAGLHMKRKEDEKWVIYNFVKEHNHEICP----------------DDF--YVSVRG-KNKPAGALaiKKGLQLA 164
Cdd:PLN03097  156 CAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPaqavseqtrkmyaamaRQFaeYKNVVGlKNDSKSSF--DKGRNLG 233

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 165 LEEEDLKLLLEHFMEMQDKQPGFFYAVDFDSDKRVRNVFWLDAKAKHDYCSFSDVVLFDTFYVRNGYRIPFAPFIGVSHH 244
Cdd:PLN03097  234 LEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFDTTYVRNKYKMPLALFVGVNQH 313

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 245 RQYVLLGCALIGEVSESTYSWLFRTWLKAVGGQAPGVMITDQDKLLSDIVVEVFPDVRHIFCLWSVLSKISEMLNPFVSQ 324
Cdd:PLN03097  314 YQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQ 393

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 325 DDGFMESFGNCVASSWTDEHFERRWSNMIGKFELNENEWVQLLFRDRKKWVPHYFHGICLAGLSGPERSGSIASHFDKYM 404
Cdd:PLN03097  394 HENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYV 473

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 405 NSEATFKDFFELYMKFLQYRCDVEAKDDLEYQSKQPTLRSSLAFEKQLSLIYTDAAFKKFQAEVPGVVSCQLQKEREDGT 484
Cdd:PLN03097  474 HKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPKMESQDET 553

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 485 TAIFRIEDFEERQNFFVALNNELLDACCSCHLFEYQGFLCKHAILVLQSADVSRVPSQYILKRWSKKGNNKEDKNDKCAT 564
Cdd:PLN03097  554 SITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWTKDAKSRHLLGEESEQ 633

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 565 IDNRMARFDDLCRRFVKLGVVASLSDEACKTALKLLEETVKHCVSMDNSSKfpSEPDkLMTGGSIGLenegvldcaskvs 644
Cdd:PLN03097  634 VQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRALEEAFGNCISMNNSNK--SLVE-AGTSPTHGL------------- 697

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 645 kkkkiqkkrkvYCGPEDATNRS-EELRQETEQVSSRAPTFENCYIPQANMEE----PELGSRATTLGVYYSTQQTNQGFP 719
Cdd:PLN03097  698 -----------LCIEDDNQSRSmTKTNKKKNPTKKRKVNSEQEVTTVAAQDSlqqmDKLSSRAVALESYYGTQQSVQGMV 766

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 720 SISSI---QNGYYGHPPTIQAMGNLHSI---HErmSQYETQPSMQGafQGQTGFRGSAIRGCYDIEEtlhDMTMGSSQFQ 793
Cdd:PLN03097  767 QLNLMaptRDNYYGNQQTIQGLGQLNSIapsHD--GYYGTQQSIHG--LGQMDFFRTPAGFSYDIRD---DPNVRTAQLH 839


                  ....*.
gi 1063705519 794 GSDSSH 799
Cdd:PLN03097  840 DDASRH 845
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 53-138 4.78e-28

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 108.19  E-value: 4.78e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519  53 FYREYARSVGFGITIKASRRSKRSGKFIDVKIACSRFGTKREKA---TAINPRSCPKTGCKAGLHMKRKEDEKWVIYNFV 129
Cdd:pfam03101   2 FYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKQrtgEARRPRPSTRTGCKAMIVVKRESDGKWVVTQFV 81


                  ....*....
gi 1063705519 130 KEHNHEICP 138
Cdd:pfam03101  82 KEHNHELLP 90
ZnF_PMZ smart00575
plant mutator transposase zinc finger;
511-537 1.42e-05

plant mutator transposase zinc finger;


Pssm-ID: 128845  Cd Length: 28  Bit Score: 42.16  E-value: 1.42e-05
                           10        20
                   ....*....|....*....|....*..
gi 1063705519  511 CCSCHLFEYQGFLCKHAILVLQSADVS 537
Cdd:smart00575   2 TCSCRKFQLSGIPCRHALAAAIHIGLS 28
 
Name Accession Description Interval E-value
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 40-799 0e+00

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 715.23  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519  40 NGMDFESKEAAYYFYREYARSVGFGITIKASRRSKRSGKFIDVKIACSRFGTKREKATAIN----------P------RS 103
Cdd:PLN03097   76 SGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNrprarqtkqdPengtgrRS 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 104 CPKTGCKAGLHMKRKEDEKWVIYNFVKEHNHEICP----------------DDF--YVSVRG-KNKPAGALaiKKGLQLA 164
Cdd:PLN03097  156 CAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPaqavseqtrkmyaamaRQFaeYKNVVGlKNDSKSSF--DKGRNLG 233

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 165 LEEEDLKLLLEHFMEMQDKQPGFFYAVDFDSDKRVRNVFWLDAKAKHDYCSFSDVVLFDTFYVRNGYRIPFAPFIGVSHH 244
Cdd:PLN03097  234 LEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFDTTYVRNKYKMPLALFVGVNQH 313

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 245 RQYVLLGCALIGEVSESTYSWLFRTWLKAVGGQAPGVMITDQDKLLSDIVVEVFPDVRHIFCLWSVLSKISEMLNPFVSQ 324
Cdd:PLN03097  314 YQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQ 393

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 325 DDGFMESFGNCVASSWTDEHFERRWSNMIGKFELNENEWVQLLFRDRKKWVPHYFHGICLAGLSGPERSGSIASHFDKYM 404
Cdd:PLN03097  394 HENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYV 473

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 405 NSEATFKDFFELYMKFLQYRCDVEAKDDLEYQSKQPTLRSSLAFEKQLSLIYTDAAFKKFQAEVPGVVSCQLQKEREDGT 484
Cdd:PLN03097  474 HKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPKMESQDET 553

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 485 TAIFRIEDFEERQNFFVALNNELLDACCSCHLFEYQGFLCKHAILVLQSADVSRVPSQYILKRWSKKGNNKEDKNDKCAT 564
Cdd:PLN03097  554 SITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWTKDAKSRHLLGEESEQ 633

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 565 IDNRMARFDDLCRRFVKLGVVASLSDEACKTALKLLEETVKHCVSMDNSSKfpSEPDkLMTGGSIGLenegvldcaskvs 644
Cdd:PLN03097  634 VQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRALEEAFGNCISMNNSNK--SLVE-AGTSPTHGL------------- 697

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 645 kkkkiqkkrkvYCGPEDATNRS-EELRQETEQVSSRAPTFENCYIPQANMEE----PELGSRATTLGVYYSTQQTNQGFP 719
Cdd:PLN03097  698 -----------LCIEDDNQSRSmTKTNKKKNPTKKRKVNSEQEVTTVAAQDSlqqmDKLSSRAVALESYYGTQQSVQGMV 766

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 720 SISSI---QNGYYGHPPTIQAMGNLHSI---HErmSQYETQPSMQGafQGQTGFRGSAIRGCYDIEEtlhDMTMGSSQFQ 793
Cdd:PLN03097  767 QLNLMaptRDNYYGNQQTIQGLGQLNSIapsHD--GYYGTQQSIHG--LGQMDFFRTPAGFSYDIRD---DPNVRTAQLH 839


                  ....*.
gi 1063705519 794 GSDSSH 799
Cdd:PLN03097  840 DDASRH 845
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 53-138 4.78e-28

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 108.19  E-value: 4.78e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519  53 FYREYARSVGFGITIKASRRSKRSGKFIDVKIACSRFGTKREKA---TAINPRSCPKTGCKAGLHMKRKEDEKWVIYNFV 129
Cdd:pfam03101   2 FYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKQrtgEARRPRPSTRTGCKAMIVVKRESDGKWVVTQFV 81


                  ....*....
gi 1063705519 130 KEHNHEICP 138
Cdd:pfam03101  82 KEHNHELLP 90
MULE pfam10551
MULE transposase domain; This domain was identified by Babu and colleagues.
 219-313 1.01e-20

MULE transposase domain; This domain was identified by Babu and colleagues.


Pssm-ID: 463145 [Multi-domain]  Cd Length: 98  Bit Score: 87.32  E-value: 1.01e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705519 219 VVLFDTFYVRNGYRIPFAPFIGVSHHRQYVLLGCALIGEVSESTYSWLF---RTWLKAVGGQAPGVMITDQDKLLSDIVV 295
Cdd:pfam10551   1 VLLIDGTYKTNKYKMPLFTAVGVDHHGQSFPIAFGLVSNETEESFTWLFdqlIAFRECMSGLSPQVIITDRDKALKNAIN 80

                          90
                  ....*....|....*...
gi 1063705519 296 EVFPDVRHIFCLWSVLSK 313
Cdd:pfam10551  81 LVFPEAQHRLCIFHINKN 98
SWIM pfam04434
SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is ...
 499-535 3.20e-06

SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organized into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts.


Pssm-ID: 309540  Cd Length: 38  Bit Score: 44.33  E-value: 3.20e-06
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1063705519 499 FFVALNNE-LLDACCSCHLFEYQGFLCKHAILVLQSAD 535
Cdd:pfam04434   1 YRVQLDLDgLEKASCSCPDFQLNGIPCKHALAVLLALG 38
ZnF_PMZ smart00575
plant mutator transposase zinc finger;
511-537 1.42e-05

plant mutator transposase zinc finger;


Pssm-ID: 128845  Cd Length: 28  Bit Score: 42.16  E-value: 1.42e-05
                           10        20
                   ....*....|....*....|....*..
gi 1063705519  511 CCSCHLFEYQGFLCKHAILVLQSADVS 537
Cdd:smart00575   2 TCSCRKFQLSGIPCRHALAAAIHIGLS 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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