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Conserved domains on  [gi|1063705566|ref|NP_001323933|]
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receptor like protein 22 [Arabidopsis thaliana]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 1000136)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00113 super family cl33413
leucine-rich repeat receptor-like protein kinase; Provisional
 87-699 1.96e-73

leucine-rich repeat receptor-like protein kinase; Provisional


The actual alignment was detected with superfamily member PLN00113:

Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 257.85  E-value: 1.96e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566  87 SHLRYLNLSFNNFdSSPLSSAFGQLNNLEVLLLSSNGFTGQVPSSIRNLT-KLTQLNLPHNKLTGDLPSlvQNLTKLLAL 165
Cdd:PLN00113   69 SRVVSIDLSGKNI-SGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSsSLRYLNLSNNNFTGSIPR--GSIPNLETL 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 166 DLSYNQFSGTIPSSFFTMPFLSYLDLSENHLTGSFEISNSS-SKLENLNLGNNHFETEIIDPVLRLVNLRYLSLSFLNTS 244
Cdd:PLN00113  146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNlTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 245 HPIDLSIfSPLQSLTHLDLHGNSLTltsvysdidfpknmeilllsgcniSEFPRFLKSLKKLWYLDLSSNRIKGNVPDWI 324
Cdd:PLN00113  226 GEIPYEI-GGLTSLNHLDLVYNNLT------------------------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI 280

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 325 WSLPLLVSLDLSNNSFTGFNGSLdhVLANSSVQVLDIALNSFKGSFPNPPVSIINLSA---WNNSFTGDIPLSVCNRTSL 401
Cdd:PLN00113  281 FSLQKLISLDLSDNSLSGEIPEL--VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVlqlWSNKFSGEIPKNLGKHNNL 358

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 402 DVLDLSYNNFTGSIPPCM---GNFTIVNLRKNKLEGNIPDEFYSGALTQTLDVGYNQLTGELPRSLLNCSFIRFLSVDHN 478
Cdd:PLN00113  359 TVLDLSTNNLTGEIPEGLcssGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 479 RINDSFPLWLKALPNLKVLTLRSNSFHGPMspPDDQSSlafPKLQILEISHNRFTGSLPTNYFAnwsvkslkmydeerly 558
Cdd:PLN00113  439 NLQGRINSRKWDMPSLQMLSLARNKFFGGL--PDSFGS---KRLENLDLSRNQFSGAVPRKLGS---------------- 497

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 559 mgdyssdrfvYEDTLDLqykglymeqgkvltfysaiDFSGNKLEGEIPESIGLLKTLIALNLSNNSFTGHIPMSFANVTE 638
Cdd:PLN00113  498 ----------LSELMQL-------------------KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPV 548

                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1063705566 639 LESLDLSGNKLSGEIPQELGRLSYLAYIDVSDNQLTGKIPQGTQIIGQPKSSFEGNSGLCG 699
Cdd:PLN00113  549 LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609
 
Name Accession Description Interval E-value
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 87-699 1.96e-73

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 257.85  E-value: 1.96e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566  87 SHLRYLNLSFNNFdSSPLSSAFGQLNNLEVLLLSSNGFTGQVPSSIRNLT-KLTQLNLPHNKLTGDLPSlvQNLTKLLAL 165
Cdd:PLN00113   69 SRVVSIDLSGKNI-SGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSsSLRYLNLSNNNFTGSIPR--GSIPNLETL 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 166 DLSYNQFSGTIPSSFFTMPFLSYLDLSENHLTGSFEISNSS-SKLENLNLGNNHFETEIIDPVLRLVNLRYLSLSFLNTS 244
Cdd:PLN00113  146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNlTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 245 HPIDLSIfSPLQSLTHLDLHGNSLTltsvysdidfpknmeilllsgcniSEFPRFLKSLKKLWYLDLSSNRIKGNVPDWI 324
Cdd:PLN00113  226 GEIPYEI-GGLTSLNHLDLVYNNLT------------------------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI 280

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 325 WSLPLLVSLDLSNNSFTGFNGSLdhVLANSSVQVLDIALNSFKGSFPNPPVSIINLSA---WNNSFTGDIPLSVCNRTSL 401
Cdd:PLN00113  281 FSLQKLISLDLSDNSLSGEIPEL--VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVlqlWSNKFSGEIPKNLGKHNNL 358

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 402 DVLDLSYNNFTGSIPPCM---GNFTIVNLRKNKLEGNIPDEFYSGALTQTLDVGYNQLTGELPRSLLNCSFIRFLSVDHN 478
Cdd:PLN00113  359 TVLDLSTNNLTGEIPEGLcssGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 479 RINDSFPLWLKALPNLKVLTLRSNSFHGPMspPDDQSSlafPKLQILEISHNRFTGSLPTNYFAnwsvkslkmydeerly 558
Cdd:PLN00113  439 NLQGRINSRKWDMPSLQMLSLARNKFFGGL--PDSFGS---KRLENLDLSRNQFSGAVPRKLGS---------------- 497

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 559 mgdyssdrfvYEDTLDLqykglymeqgkvltfysaiDFSGNKLEGEIPESIGLLKTLIALNLSNNSFTGHIPMSFANVTE 638
Cdd:PLN00113  498 ----------LSELMQL-------------------KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPV 548

                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1063705566 639 LESLDLSGNKLSGEIPQELGRLSYLAYIDVSDNQLTGKIPQGTQIIGQPKSSFEGNSGLCG 699
Cdd:PLN00113  549 LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
57-351 1.65e-25

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 110.02  E-value: 1.65e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566  57 DNTTGAVTVLELPGGCLRGTLRPNSSLFELSHLRYLNLSFNNFDSspLSSAFGQLNNLEVLLLSSNGFTgQVPSSIRNLT 136
Cdd:COG4886    83 SLLLLGLTDLGDLTNLTELDLSGNEELSNLTNLESLDLSGNQLTD--LPEELANLTNLKELDLSNNQLT-DLPEPLGNLT 159

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 137 KLTQLNLPHNKLTgDLPSLVQNLTKLLALDLSYNQFSgTIPSSFFTMPFLSYLDLSENHLTG-SFEISNsSSKLENLNLG 215
Cdd:COG4886   160 NLKSLDLSNNQLT-DLPEELGNLTNLKELDLSNNQIT-DLPEPLGNLTNLEELDLSGNQLTDlPEPLAN-LTNLETLDLS 236

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 216 NNHFETeiIDPVLRLVNLRYLSLSFLNTShpiDLSIFSPLQSLTHLDLHGNSLTLTSVySDIDFPKNMEILLLSGCNISE 295
Cdd:COG4886   237 NNQLTD--LPELGNLTNLEELDLSNNQLT---DLPPLANLTNLKTLDLSNNQLTDLKL-KELELLLGLNSLLLLLLLLNL 310

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1063705566 296 FPRFLKSLKKLWYLDLSSNRIKGNVPDWIWSLPLLVSLDLSNNSFTGFNGSLDHVL 351
Cdd:COG4886   311 LELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLL 366
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 77-296 1.33e-06

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 51.20  E-value: 1.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566  77 LRPNSSLfelshlRYLNLSFNNFDSSP-----LSSAFGQLNNLEVLLLSSNGFTGQVPSSIRNLTK---LTQLNLPHNKL 148
Cdd:cd00116    47 LRPQPSL------KELCLSLNETGRIPrglqsLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRsssLQELKLNNNGL 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 149 TGD--------LPSLVQNLTKLlalDLSYNQFSGT----IPSSFFTMPFLSYLDLSENHLTGS-----FEISNSSSKLEN 211
Cdd:cd00116   121 GDRglrllakgLKDLPPALEKL---VLGRNRLEGAsceaLAKALRANRDLKELNLANNGIGDAgiralAEGLKANCNLEV 197

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 212 LNLGNNHF-ETEIID--------PVLRLVNLRYLSLSFLNTSHpIDLSIFSPLQSLTHLDLHGNSLTLTSVYSDIDFPKN 282
Cdd:cd00116   198 LDLNNNGLtDEGASAlaetlaslKSLEVLNLGDNNLTDAGAAA-LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAE 276

                         250
                  ....*....|....
gi 1063705566 283 MEILLLSGCNISEF 296
Cdd:cd00116   277 KESLLELDLRGNKF 290
LRR_8 pfam13855
Leucine rich repeat;
87-148 2.92e-06

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 45.21  E-value: 2.92e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1063705566  87 SHLRYLNLSFNNFDSSPlSSAFGQLNNLEVLLLSSNGFTGQVPSSIRNLTKLTQLNLPHNKL 148
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLD-DGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
 
Name Accession Description Interval E-value
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 87-699 1.96e-73

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 257.85  E-value: 1.96e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566  87 SHLRYLNLSFNNFdSSPLSSAFGQLNNLEVLLLSSNGFTGQVPSSIRNLT-KLTQLNLPHNKLTGDLPSlvQNLTKLLAL 165
Cdd:PLN00113   69 SRVVSIDLSGKNI-SGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSsSLRYLNLSNNNFTGSIPR--GSIPNLETL 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 166 DLSYNQFSGTIPSSFFTMPFLSYLDLSENHLTGSFEISNSS-SKLENLNLGNNHFETEIIDPVLRLVNLRYLSLSFLNTS 244
Cdd:PLN00113  146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNlTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 245 HPIDLSIfSPLQSLTHLDLHGNSLTltsvysdidfpknmeilllsgcniSEFPRFLKSLKKLWYLDLSSNRIKGNVPDWI 324
Cdd:PLN00113  226 GEIPYEI-GGLTSLNHLDLVYNNLT------------------------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI 280

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 325 WSLPLLVSLDLSNNSFTGFNGSLdhVLANSSVQVLDIALNSFKGSFPNPPVSIINLSA---WNNSFTGDIPLSVCNRTSL 401
Cdd:PLN00113  281 FSLQKLISLDLSDNSLSGEIPEL--VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVlqlWSNKFSGEIPKNLGKHNNL 358

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 402 DVLDLSYNNFTGSIPPCM---GNFTIVNLRKNKLEGNIPDEFYSGALTQTLDVGYNQLTGELPRSLLNCSFIRFLSVDHN 478
Cdd:PLN00113  359 TVLDLSTNNLTGEIPEGLcssGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 479 RINDSFPLWLKALPNLKVLTLRSNSFHGPMspPDDQSSlafPKLQILEISHNRFTGSLPTNYFAnwsvkslkmydeerly 558
Cdd:PLN00113  439 NLQGRINSRKWDMPSLQMLSLARNKFFGGL--PDSFGS---KRLENLDLSRNQFSGAVPRKLGS---------------- 497

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 559 mgdyssdrfvYEDTLDLqykglymeqgkvltfysaiDFSGNKLEGEIPESIGLLKTLIALNLSNNSFTGHIPMSFANVTE 638
Cdd:PLN00113  498 ----------LSELMQL-------------------KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPV 548

                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1063705566 639 LESLDLSGNKLSGEIPQELGRLSYLAYIDVSDNQLTGKIPQGTQIIGQPKSSFEGNSGLCG 699
Cdd:PLN00113  549 LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
57-351 1.65e-25

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 110.02  E-value: 1.65e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566  57 DNTTGAVTVLELPGGCLRGTLRPNSSLFELSHLRYLNLSFNNFDSspLSSAFGQLNNLEVLLLSSNGFTgQVPSSIRNLT 136
Cdd:COG4886    83 SLLLLGLTDLGDLTNLTELDLSGNEELSNLTNLESLDLSGNQLTD--LPEELANLTNLKELDLSNNQLT-DLPEPLGNLT 159

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 137 KLTQLNLPHNKLTgDLPSLVQNLTKLLALDLSYNQFSgTIPSSFFTMPFLSYLDLSENHLTG-SFEISNsSSKLENLNLG 215
Cdd:COG4886   160 NLKSLDLSNNQLT-DLPEELGNLTNLKELDLSNNQIT-DLPEPLGNLTNLEELDLSGNQLTDlPEPLAN-LTNLETLDLS 236

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 216 NNHFETeiIDPVLRLVNLRYLSLSFLNTShpiDLSIFSPLQSLTHLDLHGNSLTLTSVySDIDFPKNMEILLLSGCNISE 295
Cdd:COG4886   237 NNQLTD--LPELGNLTNLEELDLSNNQLT---DLPPLANLTNLKTLDLSNNQLTDLKL-KELELLLGLNSLLLLLLLLNL 310

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1063705566 296 FPRFLKSLKKLWYLDLSSNRIKGNVPDWIWSLPLLVSLDLSNNSFTGFNGSLDHVL 351
Cdd:COG4886   311 LELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLL 366
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
80-393 2.14e-23

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 103.47  E-value: 2.14e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566  80 NSSLFELSHLRYLNLSFNNFDSSPLSSAFGQLNNLEVLLLSSNgftgqvpSSIRNLTKLTQLNLPHNKLTgDLPSLVQNL 159
Cdd:COG4886    64 SLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGN-------EELSNLTNLESLDLSGNQLT-DLPEELANL 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 160 TKLLALDLSYNQFSgTIPSSFFTMPFLSYLDLSENHLTG-SFEISNSSsKLENLNLGNNHFeTEIIDPVLRLVNLRYLSL 238
Cdd:COG4886   136 TNLKELDLSNNQLT-DLPEPLGNLTNLKSLDLSNNQLTDlPEELGNLT-NLKELDLSNNQI-TDLPEPLGNLTNLEELDL 212

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 239 SFlNTSHPIDLSIfSPLQSLTHLDLHGNSLTltsvysdiDFP-----KNMEILLLSGCNISEFPrFLKSLKKLWYLDLSS 313
Cdd:COG4886   213 SG-NQLTDLPEPL-ANLTNLETLDLSNNQLT--------DLPelgnlTNLEELDLSNNQLTDLP-PLANLTNLKTLDLSN 281

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 314 NRIKGNVPDWIWSLPLLVSLDLSNNSFTGFNGSLDHVLANSSVQVLDIALNSFKGSFPNPPVSIINLSAWNNSFTGDIPL 393
Cdd:COG4886   282 NQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSL 361
PLN03150 PLN03150
hypothetical protein; Provisional
 590-706 3.25e-21

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 98.73  E-value: 3.25e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 590 FYSAIDFSGNKLEGEIPESIGLLKTLIALNLSNNSFTGHIPMSFANVTELESLDLSGNKLSGEIPQELGRLSYLAYIDVS 669
Cdd:PLN03150  419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1063705566 670 DNQLTGKIPQ--GTQIIGQPKSSFEGNSGLCGLPLEESC 706
Cdd:PLN03150  499 GNSLSGRVPAalGGRLLHRASFNFTDNAGLCGIPGLRAC 537
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
80-368 1.18e-18

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 89.22  E-value: 1.18e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566  80 NSSLFELSHLRYLNLSFNNFDSSPLSSAFGQLNNLEVLLLSSNGFTGQVPSSIRNLTKLTQLNLPHNKLTGDL--PSLVQ 157
Cdd:COG4886    14 LLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLlgLTDLG 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 158 NLTKLLALDLSYNQfsgtipsSFFTMPFLSYLDLSENHLTGSFEISNSSSKLENLNLGNNHFeTEIIDPVLRLVNLRYLS 237
Cdd:COG4886    94 DLTNLTELDLSGNE-------ELSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQL-TDLPEPLGNLTNLKSLD 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 238 LSFLNTSHpIDLSIfSPLQSLTHLDLHGNSLTLTSvySDIDFPKNMEILLLSGCNISEFPRFLKSLKKLWYLDLSSNRIK 317
Cdd:COG4886   166 LSNNQLTD-LPEEL-GNLTNLKELDLSNNQITDLP--EPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLT 241

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1063705566 318 gNVPdWIWSLPLLVSLDLSNNSFTgfngSLDHVLANSSVQVLDIALNSFKG 368
Cdd:COG4886   242 -DLP-ELGNLTNLEELDLSNNQLT----DLPPLANLTNLKTLDLSNNQLTD 286
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
112-483 5.53e-17

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 84.21  E-value: 5.53e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 112 NNLEVLLLSSNGFTGQVPSSIRNLTKLTQLNLPHNKLTGDLPSLVQNLTKLLALDLSYNQFSGTIPSSFFTMPFLSYLDL 191
Cdd:COG4886     1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 192 SENHLTGSFEISNSSSKLENLNLGNNhfeteiiDPVLRLVNLRYLSLSFLN-TSHPIDLSifsPLQSLTHLDLHGNSLTl 270
Cdd:COG4886    81 LLSLLLLGLTDLGDLTNLTELDLSGN-------EELSNLTNLESLDLSGNQlTDLPEELA---NLTNLKELDLSNNQLT- 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 271 tSVYSDIDFPKNMEILLLSGCNISEFPRFLKSLKKLWYLDLSSNRIKgNVPDWIWSLPLLVSLDLSNNSFTgfngSLDHV 350
Cdd:COG4886   150 -DLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLKELDLSNNQIT-DLPEPLGNLTNLEELDLSGNQLT----DLPEP 223

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 351 LANSSvqvldialnsfkgsfpnppvSIINLSAWNNSFTgDIPlSVCNRTSLDVLDLSYNNFTgSIPPC--MGNFTIVNLR 428
Cdd:COG4886   224 LANLT--------------------NLETLDLSNNQLT-DLP-ELGNLTNLEELDLSNNQLT-DLPPLanLTNLKTLDLS 280

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1063705566 429 KNKLEGNIPDEFYSGALTQTLDVGYNQLTGELPRSLLNCSFIRFLSVDHNRINDS 483
Cdd:COG4886   281 NNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLV 335
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
81-311 2.17e-16

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 82.29  E-value: 2.17e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566  81 SSLFELSHLRYLNLSFNNFDSspLSSAFGQLNNLEVLLLSSNGFTgQVPSSIRNLTKLTQLNLPHNKLTgDLPSLvQNLT 160
Cdd:COG4886   176 EELGNLTNLKELDLSNNQITD--LPEPLGNLTNLEELDLSGNQLT-DLPEPLANLTNLETLDLSNNQLT-DLPEL-GNLT 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 161 KLLALDLSYNQFSgTIPSSfFTMPFLSYLDLSENHLTGS--FEISNSSSKLENLNLGNNHFETEIIDPVLRLVNLRYLSL 238
Cdd:COG4886   251 NLEELDLSNNQLT-DLPPL-ANLTNLKTLDLSNNQLTDLklKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLL 328

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063705566 239 SFLNTSHPIDLSIFSPLQSLTHLDLHGNSLTLTSVYSDIDFPKNMEILLLSGCNISEFPRFLKSLKKLWYLDL 311
Cdd:COG4886   329 LLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVL 401
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
261-534 1.57e-13

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 73.43  E-value: 1.57e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 261 LDLHGNSLTLTSVYSDIDFPKNMEILLLSGCNISEFPRFLKSLKKLWYLDLSSNRIKGNVPDWIWSLPLLVSLDLSNNSF 340
Cdd:COG4886     3 LLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 341 TGFNGSLDHVLANSSVQVLDIALNSFKGSFPNppvsIINLSAWNNSFTgDIPLSVCNRTSLDVLDLSYNNFTgSIPPCMG 420
Cdd:COG4886    83 SLLLLGLTDLGDLTNLTELDLSGNEELSNLTN----LESLDLSGNQLT-DLPEELANLTNLKELDLSNNQLT-DLPEPLG 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 421 NFT---IVNLRKNKLEGnIPDEFYSGALTQTLDVGYNQLTgELPRSLLNCSFIRFLSVDHNRINDsFPLWLKALPNLKVL 497
Cdd:COG4886   157 NLTnlkSLDLSNNQLTD-LPEELGNLTNLKELDLSNNQIT-DLPEPLGNLTNLEELDLSGNQLTD-LPEPLANLTNLETL 233

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1063705566 498 TLRSNSFHgpmsppdDQSSLA-FPKLQILEISHNRFTG 534
Cdd:COG4886   234 DLSNNQLT-------DLPELGnLTNLEELDLSNNQLTD 264
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
329-675 2.73e-12

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 69.58  E-value: 2.73e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 329 LLVSLDLSNNSFTGFNGSLDHVLANSSVQVLDIALNSFKGSFPNPPVSIINLSAWNNSFTGDIPLSVCNRTSLDVLDLSY 408
Cdd:COG4886     5 LLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 409 NNFTGSIPPCMGNFTIVNLRKNKLEGNIPDefysgalTQTLDVGYNQLTgELPRSLLNCSFIRFLSVDHNRINDsFPLWL 488
Cdd:COG4886    85 LLLGLTDLGDLTNLTELDLSGNEELSNLTN-------LESLDLSGNQLT-DLPEELANLTNLKELDLSNNQLTD-LPEPL 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 489 KALPNLKVLTLRSNSFHGpmsppDDQSSLAFPKLQILEISHNRFTgSLPTNyFANWsvKSLKmydeerlymgdyssdrfv 568
Cdd:COG4886   156 GNLTNLKSLDLSNNQLTD-----LPEELGNLTNLKELDLSNNQIT-DLPEP-LGNL--TNLE------------------ 208

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 569 yedTLDLqykglymeqgkvltfysaidfSGNKLEgEIPESIGLLKTLIALNLSNNSFTgHIPmSFANVTELESLDLSGNK 648
Cdd:COG4886   209 ---ELDL---------------------SGNQLT-DLPEPLANLTNLETLDLSNNQLT-DLP-ELGNLTNLEELDLSNNQ 261

                         330       340
                  ....*....|....*....|....*..
gi 1063705566 649 LSgEIPqELGRLSYLAYIDVSDNQLTG 675
Cdd:COG4886   262 LT-DLP-PLANLTNLKTLDLSNNQLTD 286
PLN03150 PLN03150
hypothetical protein; Provisional
 117-198 1.61e-11

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 67.53  E-value: 1.61e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 117 LLLSSNGFTGQVPSSIRNLTKLTQLNLPHNKLTGDLPSLVQNLTKLLALDLSYNQFSGTIPSSFFTMPFLSYLDLSENHL 196
Cdd:PLN03150  423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502


                  ..
gi 1063705566 197 TG 198
Cdd:PLN03150  503 SG 504
PLN03150 PLN03150
hypothetical protein; Provisional
 51-156 5.13e-11

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 65.99  E-value: 5.13e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566  51 FSGVVC--DNTTGA--VTVLELPGGCLRGTLrPNSsLFELSHLRYLNLSfNNFDSSPLSSAFGQLNNLEVLLLSSNGFTG 126
Cdd:PLN03150  404 WSGADCqfDSTKGKwfIDGLGLDNQGLRGFI-PND-ISKLRHLQSINLS-GNSIRGNIPPSLGSITSLEVLDLSYNSFNG 480

                          90       100       110
                  ....*....|....*....|....*....|
gi 1063705566 127 QVPSSIRNLTKLTQLNLPHNKLTGDLPSLV 156
Cdd:PLN03150  481 SIPESLGQLTSLRILNLNGNSLSGRVPAAL 510
PLN03150 PLN03150
hypothetical protein; Provisional
 340-437 5.59e-11

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 65.99  E-value: 5.59e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 340 FTGFNGSLDHVLANSSVQVLDIALNSFKGSFPNPPVSI-----INLSawNNSFTGDIPLSVCNRTSLDVLDLSYNNFTGS 414
Cdd:PLN03150  404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLrhlqsINLS--GNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

                          90       100
                  ....*....|....*....|....*.
gi 1063705566 415 IPPCMGNFT---IVNLRKNKLEGNIP 437
Cdd:PLN03150  482 IPESLGQLTslrILNLNGNSLSGRVP 507
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
300-678 1.17e-10

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 64.18  E-value: 1.17e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 300 LKSLKKLWYLDLSSNRIKGNVPDWIWSLPLLVSLDLSNNSFTGFNGSLDHVLANSSVQVLDIALNSFKGSFPNPPVSIIN 379
Cdd:COG4886     1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 380 LSAWNNSFTGDIPlsvcNRTSLDVLDLSYNNFTGSIPpcmgNFTIVNLRKNKLEgNIPDEFYSGALTQTLDVGYNQLTgE 459
Cdd:COG4886    81 LLSLLLLGLTDLG----DLTNLTELDLSGNEELSNLT----NLESLDLSGNQLT-DLPEELANLTNLKELDLSNNQLT-D 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 460 LPRSLLNCSFIRFLSVDHNRINDsFPLWLKALPNLKVLTLRSNSFHgpmsppDDQSSLA-FPKLQILEISHNRFTgSLPT 538
Cdd:COG4886   151 LPEPLGNLTNLKSLDLSNNQLTD-LPEELGNLTNLKELDLSNNQIT------DLPEPLGnLTNLEELDLSGNQLT-DLPE 222

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 539 NyFANWsvKSLKmydeerlymgdyssdrfvyedTLDLqykglymeqgkvltfysaidfSGNKLEgEIPEsIGLLKTLIAL 618
Cdd:COG4886   223 P-LANL--TNLE---------------------TLDL---------------------SNNQLT-DLPE-LGNLTNLEEL 255

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 619 NLSNNSFTgHIPMSfANVTELESLDLSGNKLSGEIPQELGRLSYLAYIDVSDNQLTGKIP 678
Cdd:COG4886   256 DLSNNQLT-DLPPL-ANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLEL 313
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
268-504 1.89e-08

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 57.78  E-value: 1.89e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 268 LTLTSVYSDIdfPKNMEILLLSGCNISEFPRFLK-SLKKLWYLDLSSNRIKGNVPDWIWSLPL---------------LV 331
Cdd:PRK15370  188 LGLTTIPACI--PEQITTLILDNNELKSLPENLQgNIKTLYANSNQLTSIPATLPDTIQEMELsinritelperlpsaLQ 265

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 332 SLDLSNNSFTGFNGSLDHVLanssvQVLDIALNSFKGSFPNPPVSIINLSAWNNSFTGdIPLSVcnRTSLDVLDLSYNNF 411
Cdd:PRK15370  266 SLDLFHNKISCLPENLPEEL-----RYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENAL 337

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 412 T---GSIPPCMGNFTIVNLRKNKLEGNIPDEFysgaltQTLDVGYNQLTgELPRSLlnCSFIRFLSVDHN---RINDSFP 485
Cdd:PRK15370  338 TslpASLPPELQVLDVSKNQITVLPETLPPTI------TTLDVSRNALT-NLPENL--PAALQIMQASRNnlvRLPESLP 408

                         250
                  ....*....|....*....
gi 1063705566 486 LWLKALPNLKVLTLRSNSF 504
Cdd:PRK15370  409 HFRGEGPQPTRIIVEYNPF 427
PLN03150 PLN03150
hypothetical protein; Provisional
 104-179 1.44e-07

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 54.82  E-value: 1.44e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1063705566 104 LSSAFGQLNNLEVLLLSSNGFTGQVPSSIRNLTKLTQLNLPHNKLTGDLPSLVQNLTKLLALDLSYNQFSGTIPSS 179
Cdd:PLN03150  434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509
PLN03150 PLN03150
hypothetical protein; Provisional
 141-223 1.13e-06

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 52.13  E-value: 1.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 141 LNLPHNKLTGDLPSLVQNLTKLLALDLSYNQFSGTIPSSFFTMPFLSYLDLSENHLTGSFEIS-NSSSKLENLNLGNNHF 219
Cdd:PLN03150  423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESlGQLTSLRILNLNGNSL 502


                  ....
gi 1063705566 220 ETEI 223
Cdd:PLN03150  503 SGRV 506
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 77-296 1.33e-06

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 51.20  E-value: 1.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566  77 LRPNSSLfelshlRYLNLSFNNFDSSP-----LSSAFGQLNNLEVLLLSSNGFTGQVPSSIRNLTK---LTQLNLPHNKL 148
Cdd:cd00116    47 LRPQPSL------KELCLSLNETGRIPrglqsLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRsssLQELKLNNNGL 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 149 TGD--------LPSLVQNLTKLlalDLSYNQFSGT----IPSSFFTMPFLSYLDLSENHLTGS-----FEISNSSSKLEN 211
Cdd:cd00116   121 GDRglrllakgLKDLPPALEKL---VLGRNRLEGAsceaLAKALRANRDLKELNLANNGIGDAgiralAEGLKANCNLEV 197

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 212 LNLGNNHF-ETEIID--------PVLRLVNLRYLSLSFLNTSHpIDLSIFSPLQSLTHLDLHGNSLTLTSVYSDIDFPKN 282
Cdd:cd00116   198 LDLNNNGLtDEGASAlaetlaslKSLEVLNLGDNNLTDAGAAA-LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAE 276

                         250
                  ....*....|....
gi 1063705566 283 MEILLLSGCNISEF 296
Cdd:cd00116   277 KESLLELDLRGNKF 290
PLN03150 PLN03150
hypothetical protein; Provisional
 296-371 1.36e-06

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 51.74  E-value: 1.36e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1063705566 296 FPRFLKSLKKLWYLDLSSNRIKGNVPDWIWSLPLLVSLDLSNNSftgFNGSLDHVLAN-SSVQVLDIALNSFKGSFP 371
Cdd:PLN03150  434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS---FNGSIPESLGQlTSLRILNLNGNSLSGRVP 507
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 108-304 1.66e-06

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 49.78  E-value: 1.66e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 108 FGQLNNLEVLLLSSNGFTgqvpsSIRNL---TKLTQLNLPHNKLT--GDLPSLVqNLTKLlalDLSYNQFSgTIpSSFFT 182
Cdd:cd21340    20 LSLCKNLKVLYLYDNKIT-----KIENLeflTNLTHLYLQNNQIEkiENLENLV-NLKKL---YLGGNRIS-VV-EGLEN 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 183 MPFLSYLDLSENHLTGSFE-------ISNSSSKLENLNLGNNHFETeiIDPVLRLVNLRYLSLSFLNTSHPIDLS-IFSP 254
Cdd:cd21340    89 LTNLEELHIENQRLPPGEKltfdprsLAALSNSLRVLNISGNNIDS--LEPLAPLRNLEQLDASNNQISDLEELLdLLSS 166

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1063705566 255 LQSLTHLDLHGNSLTLTSVYSD--IDFPKNMEIllLSGCNISEFPR-FLKSLK 304
Cdd:cd21340   167 WPSLRELDLTGNPVCKKPKYRDkiILASKSLEV--LDGKEITDTERqFLKRLK 217
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 181-412 2.03e-06

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 50.43  E-value: 2.03e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 181 FTMPFLSYLDLSENHLTGSFEISNSSSKLENLNLGNNhfETEIIDPVLRLV--------NLRYLSLSflNTSHPIDLS-I 251
Cdd:cd00116    25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN--ETGRIPRGLQSLlqgltkgcGLQELDLS--DNALGPDGCgV 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 252 FSPLQ---SLTHLDLHGNSL----TLTSVYSDIDFPKNMEILLLSGCNISEFPRF-----LKSLKKLWYLDLSSNRIKGn 319
Cdd:cd00116   101 LESLLrssSLQELKLNNNGLgdrgLRLLAKGLKDLPPALEKLVLGRNRLEGASCEalakaLRANRDLKELNLANNGIGD- 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 320 vpDWIWSL-------PLLVSLDLSNNSFTGFNGS-LDHVLA-NSSVQVLDIALNS--------FKGSFPNPPVSIINLSA 382
Cdd:cd00116   180 --AGIRALaeglkanCNLEVLDLNNNGLTDEGASaLAETLAsLKSLEVLNLGDNNltdagaaaLASALLSPNISLLTLSL 257

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1063705566 383 WNNSFTGDIPLSVC----NRTSLDVLDLSYNNFT 412
Cdd:cd00116   258 SCNDITDDGAKDLAevlaEKESLLELDLRGNKFG 291
LRR_8 pfam13855
Leucine rich repeat;
87-148 2.92e-06

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 45.21  E-value: 2.92e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1063705566  87 SHLRYLNLSFNNFDSSPlSSAFGQLNNLEVLLLSSNGFTGQVPSSIRNLTKLTQLNLPHNKL 148
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLD-DGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PLN03150 PLN03150
hypothetical protein; Provisional
 401-492 1.35e-05

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 48.66  E-value: 1.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 401 LDVLDLSYNNFTGSIP---PCMGNFTIVNLRKNKLEGNIPDEFYSGALTQTLDVGYNQLTGELPRSLLNCSFIRFLSVDH 477
Cdd:PLN03150  420 IDGLGLDNQGLRGFIPndiSKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499

                          90
                  ....*....|....*
gi 1063705566 478 NRINDSFPLWLKALP 492
Cdd:PLN03150  500 NSLSGRVPAALGGRL 514
LRR_8 pfam13855
Leucine rich repeat;
282-340 1.52e-05

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 42.90  E-value: 1.52e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 282 NMEILLLSGCNISEF-PRFLKSLKKLWYLDLSSNRIKGNVPDWIWSLPLLVSLDLSNNSF 340
Cdd:pfam13855   2 NLRSLDLSNNRLTSLdDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 135-341 3.62e-05

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 45.55  E-value: 3.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 135 LTKLTQLNLPHNKLTG-DLPSLVQNLTKLLALDlsyNQFSgTIPSsFFTMPFLSYLDLSENHLTgsfEISNSSS--KLEN 211
Cdd:cd21340     1 LKRITHLYLNDKNITKiDNLSLCKNLKVLYLYD---NKIT-KIEN-LEFLTNLTHLYLQNNQIE---KIENLENlvNLKK 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 212 LNLGNNHFEteiidpvlRLVNLRYL-SLSFLNTSH---PIDLSIFSPLQSLTHLdlhGNSLTltsvysdidfpknmeILL 287
Cdd:cd21340    73 LYLGGNRIS--------VVEGLENLtNLEELHIENqrlPPGEKLTFDPRSLAAL---SNSLR---------------VLN 126

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1063705566 288 LSGCNISEfPRFLKSLKKLWYLDLSSNRIK--GNVPDWIWSLPLLVSLDLSNNSFT 341
Cdd:cd21340   127 ISGNNIDS-LEPLAPLRNLEQLDASNNQISdlEELLDLLSSWPSLRELDLTGNPVC 181
PLN03150 PLN03150
hypothetical protein; Provisional
 309-420 4.89e-05

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 46.73  E-value: 4.89e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 309 LDLSSNRIKGNVPDWIWSLPLLVSLDLSNNSFTG-FNGSLDHVlanSSVQVLDIALNSFKGSfpnppvsiinlsawnnsf 387
Cdd:PLN03150  423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGnIPPSLGSI---TSLEVLDLSYNSFNGS------------------ 481

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1063705566 388 tgdIPLSVCNRTSLDVLDLSYNNFTGSIPPCMG 420
Cdd:PLN03150  482 ---IPESLGQLTSLRILNLNGNSLSGRVPAALG 511
LRR_8 pfam13855
Leucine rich repeat;
113-172 6.18e-05

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 41.36  E-value: 6.18e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 113 NLEVLLLSSNGFTGQVPSSIRNLTKLTQLNLPHNKLTGDLPSLVQNLTKLLALDLSYNQF 172
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PLN03150 PLN03150
hypothetical protein; Provisional
 425-506 7.97e-05

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 45.96  E-value: 7.97e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566 425 VNLRKNKLEGNIPDEFYSGALTQTLDVGYNQLTGELPRSLLNCSFIRFLSVDHNRINDSFPLWLKALPNLKVLTLRSNSF 504
Cdd:PLN03150  423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502


                  ..
gi 1063705566 505 HG 506
Cdd:PLN03150  503 SG 504
LRR_8 pfam13855
Leucine rich repeat;
136-196 8.30e-05

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 40.97  E-value: 8.30e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1063705566 136 TKLTQLNLPHNKLTGDLPSLVQNLTKLLALDLSYNQFSGTIPSSFFTMPFLSYLDLSENHL 196
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 635-679 8.95e-05

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 45.99  E-value: 8.95e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1063705566 635 NVTELESLDLSGNKLSGEIPQELGRLSYLAYIDVSDNQLTGKIPQ 679
Cdd:PLN00113   67 NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPD 111
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 85-379 1.57e-04

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 45.25  E-value: 1.57e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566   85 ELSHLRYLNL--SFNNFDSSPLSSAfgqlNNLEVLLLSSNGFTGQVPSSIRNLTKLTQLNLPHNKLTGDLPSLVqNLTKL 162
Cdd:PLN03210   632 SLTGLRNIDLrgSKNLKEIPDLSMA----TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566  163 LALDLSynqfSGTIPSSFFTMPF-LSYLDLSEnhlTGSFEISnSSSKLENL-NLGNNHFETEI----IDPVLRLVNLRYL 236
Cdd:PLN03210   707 YRLNLS----GCSRLKSFPDISTnISWLDLDE---TAIEEFP-SNLRLENLdELILCEMKSEKlwerVQPLTPLMTMLSP 778

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566  237 SLSFLNTSH-PIDLSIFSPLQSLTHLDLHG--NSLTLTSVYSDIDFP--------------------KNMEILLLSGCNI 293
Cdd:PLN03210   779 SLTRLFLSDiPSLVELPSSIQNLHKLEHLEieNCINLETLPTGINLEslesldlsgcsrlrtfpdisTNISDLNLSRTGI 858

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063705566  294 SEFPRFLKSLKKLWYLDLSSNRIKGNVPDWIWSLPLLVSLDLSNnsftgfNGSLDHVLANSSVQVLDIALNSFKGSFPN- 372
Cdd:PLN03210   859 EEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSD------CGALTEASWNGSPSEVAMATDNIHSKLPSt 932


                   ....*..
gi 1063705566  373 PPVSIIN 379
Cdd:PLN03210   933 VCINFIN 939
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 606-671 5.92e-04

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 42.08  E-value: 5.92e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1063705566 606 PESI-GLLKTLIALNLSNNSFTghIPMSFANVTELESLDLSGNKLS--GEIPQELGRLSYLAYIDVSDN 671
Cdd:cd21340   112 PRSLaALSNSLRVLNISGNNID--SLEPLAPLRNLEQLDASNNQISdlEELLDLLSSWPSLRELDLTGN 178
LRR_8 pfam13855
Leucine rich repeat;
618-673 1.36e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 37.50  E-value: 1.36e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1063705566 618 LNLSNNSFTGHIPMSFANVTELESLDLSGNKLSGEIPQELGRLSYLAYIDVSDNQL 673
Cdd:pfam13855   6 LDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PLN03150 PLN03150
hypothetical protein; Provisional
 469-537 4.50e-03

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 40.57  E-value: 4.50e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1063705566 469 FIRFLSVDHNRINDSFPLWLKALPNLKVLTLRSNSFHGPMSPpddqSSLAFPKLQILEISHNRFTGSLP 537
Cdd:PLN03150  419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYNSFNGSIP 483
LRR_8 pfam13855
Leucine rich repeat;
165-219 6.96e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 35.58  E-value: 6.96e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1063705566 165 LDLSYNQFSGTIPSSFFTMPFLSYLDLSENHLTGSFEISNSS-SKLENLNLGNNHF 219
Cdd:pfam13855   6 LDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGlPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
594-649 8.47e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 35.19  E-value: 8.47e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1063705566 594 IDFSGNKLEGEIPESIGLLKTLIALNLSNNSFTGHIPMSFANVTELESLDLSGNKL 649
Cdd:pfam13855   6 LDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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