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Conserved domains on  [gi|1063679789|ref|NP_001322983|]
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non-structural protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Dehalogenase super family cl46879
Reductive dehalogenase subunit; This family is most frequently associated with a Fer4 ...
 51-120 5.92e-03

Reductive dehalogenase subunit; This family is most frequently associated with a Fer4 iron-sulfur cluster towards the C-terminal region.


The actual alignment was detected with superfamily member pfam13486:

Pssm-ID: 481219  Cd Length: 288  Bit Score: 36.14  E-value: 5.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063679789  51 RPQNAYELLFTQRRDHVL-----------GYEGDFAKSKAAEALSKKTIRALISTGAGSTSYPGPMRLFILVHAPPTLNL 119
Cdd:pfam13486  36 PPGGPAAYVGKDEVAEALadsgyaekelpNWPGDTLRDTALAAASKFGQFAAAGGTASSSMFLGPQYTWDEVATPEELGV 115


                  .
gi 1063679789 120 P 120
Cdd:pfam13486 116 P 116
 
Name Accession Description Interval E-value
Dehalogenase pfam13486
Reductive dehalogenase subunit; This family is most frequently associated with a Fer4 ...
 51-120 5.92e-03

Reductive dehalogenase subunit; This family is most frequently associated with a Fer4 iron-sulfur cluster towards the C-terminal region.


Pssm-ID: 372615  Cd Length: 288  Bit Score: 36.14  E-value: 5.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063679789  51 RPQNAYELLFTQRRDHVL-----------GYEGDFAKSKAAEALSKKTIRALISTGAGSTSYPGPMRLFILVHAPPTLNL 119
Cdd:pfam13486  36 PPGGPAAYVGKDEVAEALadsgyaekelpNWPGDTLRDTALAAASKFGQFAAAGGTASSSMFLGPQYTWDEVATPEELGV 115


                  .
gi 1063679789 120 P 120
Cdd:pfam13486 116 P 116
 
Name Accession Description Interval E-value
Dehalogenase pfam13486
Reductive dehalogenase subunit; This family is most frequently associated with a Fer4 ...
 51-120 5.92e-03

Reductive dehalogenase subunit; This family is most frequently associated with a Fer4 iron-sulfur cluster towards the C-terminal region.


Pssm-ID: 372615  Cd Length: 288  Bit Score: 36.14  E-value: 5.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063679789  51 RPQNAYELLFTQRRDHVL-----------GYEGDFAKSKAAEALSKKTIRALISTGAGSTSYPGPMRLFILVHAPPTLNL 119
Cdd:pfam13486  36 PPGGPAAYVGKDEVAEALadsgyaekelpNWPGDTLRDTALAAASKFGQFAAAGGTASSSMFLGPQYTWDEVATPEELGV 115


                  .
gi 1063679789 120 P 120
Cdd:pfam13486 116 P 116
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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