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Conserved domains on  [gi|1063694341|ref|NP_001322505|]
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MATE efflux family protein [Arabidopsis thaliana]

Protein Classification

MATE family efflux transporter( domain architecture ID 10192094)

MATE (multidrug and toxic compound extrusion) family efflux transporter functions in protecting cells against oxidative stress and bile salts and may be part of the SOS system; similar to Arabidopsis thaliana MATE proteins which confer aluminum tolerance

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
MATE_DinF_like cd13136
DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE) ...
50-390 2.55e-82

DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).


:

Pssm-ID: 240541 [Multi-domain]  Cd Length: 424  Bit Score: 258.26  E-value: 2.55e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341  50 DPIASLVDTAFIGQIG-PVELAAVGVSIALFNQVSRIAIFPLVSiTTSFVAEEdacssqqdtvrdhkecieIGINNptee 128
Cdd:cd13136    19 VPLLGLVDTAVVGHLGsAAYLGAVALGTTIFNTLFWLFGFLRMG-TTGLVAQA------------------LGAGD---- 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 129 tielipekhkdslsdefktsssifsiskppaKKRNIPSASSALIIGGVLGLFQAVFLISAAKPLLSFMGvkHDSPMMRPS 208
Cdd:cd13136    76 -------------------------------REEAIALLVRALLLALAIGLLLILLQSPLLALALLLLG--ASAAVAALA 122
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 209 QRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGDVTNIILDPIFIFVFRLGVTGAATAHVISQYLMCGILLWK 288
Cdd:cd13136   123 RQYLRIRILGAPAVLLNYVATGWFRGLQDTRTPLILQIVGNVVNIVLDPLFVFGLGWGVAGAALATVIAQYLGALLGLWL 202
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 289 LMGQVDIFNMS-----TKHLQFCRFMKNGFLLLMRVIAVTFCVTLSASLAAREGSTSMAAFQVCLQVWLATSLLADGYAV 363
Cdd:cd13136   203 LRRRVRLLGKSlsrrlPSKAALKRLFKLNRDIFIRTLALLAAFLFFTALAARLGDVILAANQILLQFWLLSSYFLDGFAY 282
                         330       340
                  ....*....|....*....|....*..
gi 1063694341 364 AGQAILASAFAKKDYKRAAATASRVLQ 390
Cdd:cd13136   283 AAEALVGRALGAGDRKAARRVARRLLQ 309
 
Name Accession Description Interval E-value
MATE_DinF_like cd13136
DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE) ...
50-390 2.55e-82

DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).


Pssm-ID: 240541 [Multi-domain]  Cd Length: 424  Bit Score: 258.26  E-value: 2.55e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341  50 DPIASLVDTAFIGQIG-PVELAAVGVSIALFNQVSRIAIFPLVSiTTSFVAEEdacssqqdtvrdhkecieIGINNptee 128
Cdd:cd13136    19 VPLLGLVDTAVVGHLGsAAYLGAVALGTTIFNTLFWLFGFLRMG-TTGLVAQA------------------LGAGD---- 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 129 tielipekhkdslsdefktsssifsiskppaKKRNIPSASSALIIGGVLGLFQAVFLISAAKPLLSFMGvkHDSPMMRPS 208
Cdd:cd13136    76 -------------------------------REEAIALLVRALLLALAIGLLLILLQSPLLALALLLLG--ASAAVAALA 122
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 209 QRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGDVTNIILDPIFIFVFRLGVTGAATAHVISQYLMCGILLWK 288
Cdd:cd13136   123 RQYLRIRILGAPAVLLNYVATGWFRGLQDTRTPLILQIVGNVVNIVLDPLFVFGLGWGVAGAALATVIAQYLGALLGLWL 202
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 289 LMGQVDIFNMS-----TKHLQFCRFMKNGFLLLMRVIAVTFCVTLSASLAAREGSTSMAAFQVCLQVWLATSLLADGYAV 363
Cdd:cd13136   203 LRRRVRLLGKSlsrrlPSKAALKRLFKLNRDIFIRTLALLAAFLFFTALAARLGDVILAANQILLQFWLLSSYFLDGFAY 282
                         330       340
                  ....*....|....*....|....*..
gi 1063694341 364 AGQAILASAFAKKDYKRAAATASRVLQ 390
Cdd:cd13136   283 AAEALVGRALGAGDRKAARRVARRLLQ 309
matE TIGR00797
putative efflux protein, MATE family; The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A. ...
50-390 1.22e-68

putative efflux protein, MATE family; The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS. [Transport and binding proteins, Other]


Pssm-ID: 273273 [Multi-domain]  Cd Length: 342  Bit Score: 220.19  E-value: 1.22e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341  50 DPIASLVDTAFIGQIGPVELAAVGVSiALFNQVSRIAIFPLVSITTSFVAEEDACSSQQdtvrdhkecieiginnpteet 129
Cdd:TIGR00797   9 QPLLGLVDTAFVGHLGPVDLAAVSLG-SSVFMFLFSILMGLGTATTALVAQAVGAGNYQ--------------------- 66
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 130 ielipekhkdslsdefktsssifsiskppakkRNIPSASSALIIGGVLGLFQAVFLISAAKPLLSFMGvkHDSPMMRPSQ 209
Cdd:TIGR00797  67 --------------------------------RLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMG--ADGEVAELAQ 112
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 210 RYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGDVTNIILDPIFIF-VFR-LGVTGAATAHVISQYLMCGILLW 287
Cdd:TIGR00797 113 DYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFgKFGfLGIVGAALATVISYWLMFLLLLY 192
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 288 KLMG--QVDIFN---MSTKHLQFCRFMKNGFLLLMRVIAVTFCVTLSASLAAREGSTSMAAFQVCLQVWLATSLLADGYA 362
Cdd:TIGR00797 193 YIKKakKIGLKWeglLKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLLFMPAFGFG 272
                         330       340
                  ....*....|....*....|....*...
gi 1063694341 363 VAGQAILASAFAKKDYKRAAATASRVLQ 390
Cdd:TIGR00797 273 IAVSILVGQALGAGDPKRAKEVARVALK 300
NorM COG0534
Na+-driven multidrug efflux pump, DinF/NorM/MATE family [Defense mechanisms];
51-385 5.91e-44

Na+-driven multidrug efflux pump, DinF/NorM/MATE family [Defense mechanisms];


Pssm-ID: 440300 [Multi-domain]  Cd Length: 427  Bit Score: 157.61  E-value: 5.91e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341  51 PIASLVDTAFIGQIGPVELAAVGVSIALFNQVSRIAIFpLVSITTSFVAeedacssqqdtvrdhkecIEIGINNPTEeti 130
Cdd:COG0534    25 SLYGLVDTIFVGRLGTAALAAVGLAFPIFFLLIALGIG-LGVGGTALVA------------------QALGAGDREE--- 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 131 elipekhkdslsdefktsssifsiskppAKKrnipSASSALIIGGVLGLFQAVFLISAAKPLLSFMGVkhDSPMMRPSQR 210
Cdd:COG0534    83 ----------------------------ARR----VLGQALLLALLLGLLLTLLGLLFAPPLLRLLGA--DPEVLALARD 128
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 211 YLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGDVTNIILDPIFIFVFRLGVTGAATAHVISQYLMCGILLWKLM 290
Cdd:COG0534   129 YLRIILLGLPFLLLFNVLNGILRGLGDTKTPMIIMLIGNVLNIVLDPLLIFGGGLGVAGAALATVISQAVSALLLLYYLF 208
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 291 GQVDIFNMSTKHLQFC-----RFMKNGFLLLMRVIAVTFCVTLSASLAAREGSTSMAAFQVCLQVWLATSLLADGYAVAG 365
Cdd:COG0534   209 RKRSLLRLRLRDLRPDrkilkRILRIGLPAGLQQLAESLGFLVLNALVARLGTAAVAAYGIALRIESLAFMPALGLGQAA 288
                         330       340
                  ....*....|....*....|
gi 1063694341 366 QAILASAFAKKDYKRAAATA 385
Cdd:COG0534   289 QPLVGQNLGAGDYDRARRAA 308
PRK10367 PRK10367
DNA-damage-inducible SOS response protein; Provisional
162-380 3.17e-11

DNA-damage-inducible SOS response protein; Provisional


Pssm-ID: 182413 [Multi-domain]  Cd Length: 441  Bit Score: 64.37  E-value: 3.17e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 162 RNIPSASSALIIGGVLGLFQAVFLISAAKPL--LSFMGVKHDSPMMRPSQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTT 239
Cdd:PRK10367   80 KNPQALARALVQPLLLALGAGALIALLRTPLidLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYAR 159
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 240 TPLFATVIGDVTNIILDPIFIFVFRLGVTGAATAHVISQYLMCGILLWKLMGQVDIFNMSTKHLQ------FCRFMKNGF 313
Cdd:PRK10367  160 APVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKtawrgnFRRLLALNR 239
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1063694341 314 LLLMRVIAVTFCVTLSASLAAREGSTSMAAFQVCLQVWLATSLLADGYAVAGQAILASAFAKKDYKR 380
Cdd:PRK10367  240 DIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQ 306
MatE pfam01554
MatE; The MatE domain
54-258 3.98e-09

MatE; The MatE domain


Pssm-ID: 334587 [Multi-domain]  Cd Length: 161  Bit Score: 55.26  E-value: 3.98e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341  54 SLVDTAFIGQIGPVELAAVGVSIALFNqvsrIAIFPLVSI---TTSFVAEEdacssqqdtvrdhkecieIGINNPteeti 130
Cdd:pfam01554  13 SLIDTLFVGHLGAVALAAVSIANSIAS----LIFMFLLGLgtaLTTLVGQA------------------LGAGNF----- 65
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 131 elipekhkdslsdefktsssifsiskppakKRNIPSASSALIIGGVLGLFQAVFLISAAKPLLSFMGvkHDSPMMRPSQR 210
Cdd:pfam01554  66 ------------------------------KRAGVALRQGLILGLLLSLPIALLVLLFSEPILSLFG--QDEEVLALAKR 113
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1063694341 211 YLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGDVTNIILDPI 258
Cdd:pfam01554 114 YLRILILGIPFYALQFVLSGFLRGQGDTKPPMYINIISLLLNIPLNYL 161
 
Name Accession Description Interval E-value
MATE_DinF_like cd13136
DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE) ...
50-390 2.55e-82

DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).


Pssm-ID: 240541 [Multi-domain]  Cd Length: 424  Bit Score: 258.26  E-value: 2.55e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341  50 DPIASLVDTAFIGQIG-PVELAAVGVSIALFNQVSRIAIFPLVSiTTSFVAEEdacssqqdtvrdhkecieIGINNptee 128
Cdd:cd13136    19 VPLLGLVDTAVVGHLGsAAYLGAVALGTTIFNTLFWLFGFLRMG-TTGLVAQA------------------LGAGD---- 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 129 tielipekhkdslsdefktsssifsiskppaKKRNIPSASSALIIGGVLGLFQAVFLISAAKPLLSFMGvkHDSPMMRPS 208
Cdd:cd13136    76 -------------------------------REEAIALLVRALLLALAIGLLLILLQSPLLALALLLLG--ASAAVAALA 122
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 209 QRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGDVTNIILDPIFIFVFRLGVTGAATAHVISQYLMCGILLWK 288
Cdd:cd13136   123 RQYLRIRILGAPAVLLNYVATGWFRGLQDTRTPLILQIVGNVVNIVLDPLFVFGLGWGVAGAALATVIAQYLGALLGLWL 202
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 289 LMGQVDIFNMS-----TKHLQFCRFMKNGFLLLMRVIAVTFCVTLSASLAAREGSTSMAAFQVCLQVWLATSLLADGYAV 363
Cdd:cd13136   203 LRRRVRLLGKSlsrrlPSKAALKRLFKLNRDIFIRTLALLAAFLFFTALAARLGDVILAANQILLQFWLLSSYFLDGFAY 282
                         330       340
                  ....*....|....*....|....*..
gi 1063694341 364 AGQAILASAFAKKDYKRAAATASRVLQ 390
Cdd:cd13136   283 AAEALVGRALGAGDRKAARRVARRLLQ 309
matE TIGR00797
putative efflux protein, MATE family; The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A. ...
50-390 1.22e-68

putative efflux protein, MATE family; The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS. [Transport and binding proteins, Other]


Pssm-ID: 273273 [Multi-domain]  Cd Length: 342  Bit Score: 220.19  E-value: 1.22e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341  50 DPIASLVDTAFIGQIGPVELAAVGVSiALFNQVSRIAIFPLVSITTSFVAEEDACSSQQdtvrdhkecieiginnpteet 129
Cdd:TIGR00797   9 QPLLGLVDTAFVGHLGPVDLAAVSLG-SSVFMFLFSILMGLGTATTALVAQAVGAGNYQ--------------------- 66
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 130 ielipekhkdslsdefktsssifsiskppakkRNIPSASSALIIGGVLGLFQAVFLISAAKPLLSFMGvkHDSPMMRPSQ 209
Cdd:TIGR00797  67 --------------------------------RLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMG--ADGEVAELAQ 112
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 210 RYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGDVTNIILDPIFIF-VFR-LGVTGAATAHVISQYLMCGILLW 287
Cdd:TIGR00797 113 DYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFgKFGfLGIVGAALATVISYWLMFLLLLY 192
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 288 KLMG--QVDIFN---MSTKHLQFCRFMKNGFLLLMRVIAVTFCVTLSASLAAREGSTSMAAFQVCLQVWLATSLLADGYA 362
Cdd:TIGR00797 193 YIKKakKIGLKWeglLKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLLFMPAFGFG 272
                         330       340
                  ....*....|....*....|....*...
gi 1063694341 363 VAGQAILASAFAKKDYKRAAATASRVLQ 390
Cdd:TIGR00797 273 IAVSILVGQALGAGDPKRAKEVARVALK 300
NorM COG0534
Na+-driven multidrug efflux pump, DinF/NorM/MATE family [Defense mechanisms];
51-385 5.91e-44

Na+-driven multidrug efflux pump, DinF/NorM/MATE family [Defense mechanisms];


Pssm-ID: 440300 [Multi-domain]  Cd Length: 427  Bit Score: 157.61  E-value: 5.91e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341  51 PIASLVDTAFIGQIGPVELAAVGVSIALFNQVSRIAIFpLVSITTSFVAeedacssqqdtvrdhkecIEIGINNPTEeti 130
Cdd:COG0534    25 SLYGLVDTIFVGRLGTAALAAVGLAFPIFFLLIALGIG-LGVGGTALVA------------------QALGAGDREE--- 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 131 elipekhkdslsdefktsssifsiskppAKKrnipSASSALIIGGVLGLFQAVFLISAAKPLLSFMGVkhDSPMMRPSQR 210
Cdd:COG0534    83 ----------------------------ARR----VLGQALLLALLLGLLLTLLGLLFAPPLLRLLGA--DPEVLALARD 128
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 211 YLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGDVTNIILDPIFIFVFRLGVTGAATAHVISQYLMCGILLWKLM 290
Cdd:COG0534   129 YLRIILLGLPFLLLFNVLNGILRGLGDTKTPMIIMLIGNVLNIVLDPLLIFGGGLGVAGAALATVISQAVSALLLLYYLF 208
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 291 GQVDIFNMSTKHLQFC-----RFMKNGFLLLMRVIAVTFCVTLSASLAAREGSTSMAAFQVCLQVWLATSLLADGYAVAG 365
Cdd:COG0534   209 RKRSLLRLRLRDLRPDrkilkRILRIGLPAGLQQLAESLGFLVLNALVARLGTAAVAAYGIALRIESLAFMPALGLGQAA 288
                         330       340
                  ....*....|....*....|
gi 1063694341 366 QAILASAFAKKDYKRAAATA 385
Cdd:COG0534   289 QPLVGQNLGAGDYDRARRAA 308
MATE_NorM_like cd13137
Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to ...
54-389 9.63e-28

Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.


Pssm-ID: 240542 [Multi-domain]  Cd Length: 432  Bit Score: 113.38  E-value: 9.63e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341  54 SLVDTAFIGQIGPVELAAVGvsiaLFNQVSRIAIFPLVSITTSFVAeedaCSSQqdtvrdhkeciEIGinnpteetieli 133
Cdd:cd13137    21 GLVDVFMVGRLGAEAIAAVG----LATQVLWLLLVLNMALGTGTVA----LVSQ-----------SYG------------ 69
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 134 pekhkdslSDEFKTSSSIfsiskppakkrnipsASSALIIGGVLGLFQAVFLISAAKPLLSFMGVkhDSPMMRPSQRYLS 213
Cdd:cd13137    70 --------AGDYERARRA---------------LGQSLLLALLLSLPLALLGLLFAEPLLRLLGA--DPEVIALALTYLR 124
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 214 LRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGDVTNIILDPIFIF----VFRLGVTGAATAHVISQYLMCGILLWKL 289
Cdd:cd13137   125 IVLLGIPFFFLSLVGNAALRGAGDTKTPMYIMIIVNVLNIVLDYVLIFglwgFPGLGVAGAALATVISRVVGALLLLFLL 204
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 290 MGQVDIFNMSTKHLqfcRFMKNGFLLLMRV--------IAVTFCVTLSASLAAREGSTSMAAFQVCLQVWLATSLLADGY 361
Cdd:cd13137   205 LRGRLPIKISFKGF---RLDRKIIKKLLRIglpagleqLLRSLGFLVLLAIVASYGTAALAAYQIGLRIESLAFMPGFGF 281
                         330       340
                  ....*....|....*....|....*...
gi 1063694341 362 AVAGQAILASAFAKKDYKRAAATASRVL 389
Cdd:cd13137   282 SMAASTLVGQNLGAGDPDEARRYGKRAL 309
MATE_like_1 cd13140
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; The ...
167-381 1.42e-25

Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.


Pssm-ID: 240545 [Multi-domain]  Cd Length: 435  Bit Score: 107.23  E-value: 1.42e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 167 ASSALIIGGVLGLFQAVFLISAAKPLLSFMGVKhDSPMMRPSQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATV 246
Cdd:cd13140    84 ARNALQLNLLLGILYGLLLLLFAKPLIGFFNLG-DAEVISLAITYLRIVALGLIFSFLNPVFTGIFNALGDSKTPFIINA 162
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 247 IGDVTNIILDPIFIFVF----RLGVTGAATAHVISQYLMCGILLWKLMGQVDIFNMSTKHLQFCR-FMKN----GFLLLM 317
Cdd:cd13140   163 IGLVLNIILDPLLIFGFgpfpALGVAGAALATVLAQAIVFLLFLYALKKKKGLFLKIRILKRPDRkYIKEilklGLPVAL 242
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1063694341 318 RVIAVTFCVTLSASLAAREGSTSMAAFQVCLQVWLATSLLADGYAVAGQAILASAFAKKDYKRA 381
Cdd:cd13140   243 QSILFALISMILARIIASFGPVAIAAQKVGSQIESISWMTAEGFSTALAAFVGQNYGAGKYDRI 306
MATE_yoeA_like cd13138
Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to ...
166-381 2.05e-23

Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.


Pssm-ID: 240543 [Multi-domain]  Cd Length: 431  Bit Score: 101.00  E-value: 2.05e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 166 SASSALIIGGVLGLFQAVFLISAAKPLLSFMGVKHDSpmMRPSQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFAT 245
Cdd:cd13138    82 AVGTLLVLFLILGIVLTILGLLFAPPILRLMNTPAEI--LELAVSYLRICFLGIPFIFGYNAYSAILRGLGDSKTPLYFV 159
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 246 VIGDVTNIILDPIFIFVFRLGVTGAATAHVISQYLMCGILLWKLMGQVDIFNMSTKHLqfcRFMKNGFLLLMRV---IAV 322
Cdd:cd13138   160 IIACVLNIILDLLFIAVFHMGVAGAALATVIAQAISVLLALYYLRKKKLPFKLSLKDF---RFDKEILKEILKIglpSAL 236
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1063694341 323 T-FCVTLSA----SLAAREGSTSMAAFQVCLQVWLATSLLADGYAVAGQAILASAFAKKDYKRA 381
Cdd:cd13138   237 QqSLVSISFliinSIVNSYGVVASAAYGIANKINSFAFLPPSAIGQAVSTFVAQNIGAGKIERA 300
MATE_MepA_like cd13143
Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to ...
148-384 3.44e-21

Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump.


Pssm-ID: 240548 [Multi-domain]  Cd Length: 426  Bit Score: 94.50  E-value: 3.44e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 148 SSSIFSIS---KPPAKKRNIpsASSALIIGGVLGLFQAVFLISAAKPLLSFMGVkhDSPMMRPSQRYLSLRSLGAPAVLL 224
Cdd:cd13143    64 GASLISRRlgaGDREKANRI--FSTALLLSLILGLLLTILGLLFLDPLLRLLGA--SGELLPYAVDYLRIILLGAPFTIL 139
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 225 SLAAQGVFRGFKDTTTPLFATVIGDVTNIILDPIFIFVFRLGVTGAATAHVISQYLMCGILLWKLMGQVDIFNMSTKHLQ 304
Cdd:cd13143   140 SSVLNNLLRAEGKPKLAMLGMLIGAVLNIILDPLFIFVLGLGIAGAALATVIAQLISLLLLLLYFFRGKSLLKLSLLRFK 219
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 305 FCR-----FMKNGFLLLMRVIAVTFCVTL-SASLAAREGSTSMAAFQVCLQVWLATSLLADGYAVAGQAILASAFAKKDY 378
Cdd:cd13143   220 LSLkiikeILALGFPSFLMQLSSSVVTIVlNLTLLGYGGDIGVAAFGIVTRILTFLFLPLIGLSQGLQPIIGYNYGAGNY 299

                  ....*.
gi 1063694341 379 KRAAAT 384
Cdd:cd13143   300 DRVKQA 305
MATE_like_8 cd13134
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; The ...
167-389 5.34e-19

Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.


Pssm-ID: 240539 [Multi-domain]  Cd Length: 438  Bit Score: 88.33  E-value: 5.34e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 167 ASSALIIGGVLGLFQAVFLISAAKPLLSFMGVkhDSPMMRPSQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATV 246
Cdd:cd13134    82 AGVALLFNLLLGLVFSLLLLFFGAELLRLMGL--PPELLALGSTYLRIVGGSLFLQALSLTLSAILRSHGRTKIPMYVSL 159
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 247 IGDVTNIILDPIFIFVF----RLGVTGAATAHVISQYLMCGILLW-------KLMGQVDIFNMSTKHLQfcRFMKNGFLL 315
Cdd:cd13134   160 IMNILNIVGNYLLIFGWfglpKLGVAGVAISTVISRAVGLVLLFIllfrklkIRFRLKDLRPFPKKLLK--KILKIGLPS 237
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1063694341 316 LMRVIAVTFCVTLSASLAAREGSTSMAAFQVCLQVWLATSLLADGYAVAGQAILASAFAKKDYKRAAATASRVL 389
Cdd:cd13134   238 AGEELSYNLSQTVITAFIARLGTAALAARTYASNISMFVFLFSLAIGQATQIIVGHLVGAGDFDEAYKRVLKSL 311
MATE_like cd12082
Multidrug and toxic compound extrusion family and similar proteins; The integral membrane ...
167-385 6.45e-19

Multidrug and toxic compound extrusion family and similar proteins; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.


Pssm-ID: 240527 [Multi-domain]  Cd Length: 420  Bit Score: 87.76  E-value: 6.45e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 167 ASSALIIGGVLGLFQAVFLISAAKPLLSFMGVkhDSPMMRPSQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATV 246
Cdd:cd12082    74 LVQSIVLAILLGLLLAALLLFFSPLILSLLGA--EEEVIELAATYLTILILGLPITFLGAVLSGILQGEGDTRTAMIISV 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 247 IGDVTNIILDPIFIFVF---RLGVTGAATAHVISQYLMCGILLWKLMGQVDIFNMSTKHLQFC-----RFMKNGFLLLMR 318
Cdd:cd12082   152 LSNLLNILLDPLLIFGLgppELGIAGAALATVISYVIGALLLLIYLRKGKKILKFKLSLLKPDlellrRLLRIGLPSAIQ 231
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1063694341 319 VIAVTFCVTLSASLAAR-EGSTSMAAFQVCLQVWLATSLLADGYAVAGQAILASAFAKKDYKRAAATA 385
Cdd:cd12082   232 NSLLSLGLLIIVAIVAAfGGAAALAAYTVAFRIASLAFMPALGLAQAALPVVGQNLGAGNFDRARRIT 299
MATE_MJ0709_like cd13147
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, ...
166-363 2.51e-16

Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.


Pssm-ID: 240552 [Multi-domain]  Cd Length: 441  Bit Score: 80.28  E-value: 2.51e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 166 SASSALIIGGVLGLFQAVFLISAAKPLLSFMGvkhDSPMMRPSQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFAT 245
Cdd:cd13147    87 AAVHSILLGLIISIILTIVLLPFLEPILVLMG---AGEVLDLAVDYGRIIFLGSIFLIFNNVAYGILRGEGDTKRAMYAM 163
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 246 VIGDVTNIILDPIFIFVFRLGVTGAATAHVISQYLMCGILlwklmgqvdIFNMSTKHLQFCRFMKNGFLLLMRVIAVTFC 325
Cdd:cd13147   164 VAGSILNIILDPIFIYTLGLGIAGAAWATVISMLISSLVL---------LYWFFVKKDTYVSLSLKNFKFDKKIVKDILK 234
                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1063694341 326 VTLSASLAaregSTSMAAFQVCLQVWLATSLLADGYAV 363
Cdd:cd13147   235 VGIPASLE----QLIMSVLMIILNLILVIVAGTDGVAV 268
MATE_like_7 cd13133
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; The ...
165-389 3.57e-15

Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.


Pssm-ID: 240538 [Multi-domain]  Cd Length: 438  Bit Score: 76.80  E-value: 3.57e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 165 PSASSALIIGGVLGLFQAVFLISAAKPLLSFMGvkHDSPMMRPSQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFA 244
Cdd:cd13133    82 RVLWQGLYFSLLLAPLLALLSALAAPLLFLLLG--HSPEVQALEVEYFRIRILGAPFSLLGAALRAFFSGIGRTRVVMVA 159
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 245 TVIGDVTNIILDPIFIF----VFRLGVTGAATAHVISQYLMCGILLWKLMGQVDIfnMSTKHLQFCRFMKNGFLLLMRV- 319
Cdd:cd13133   160 NLVMVVVNIVLDYALIFgklgFPAMGIAGAAIATVIAEAVSLLFFLLLLFRRKNR--RRFGLRRAWRFDRELLRRILRLg 237
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1063694341 320 --IAVTFCVTLSA-----SLAAREGSTSMAAFQVCLQVWLATSLLADGYAVAGQAILASAFAKKDYKRAAATASRVL 389
Cdd:cd13133   238 lpSGLQFFLDVGAftvffLLIGRLGTTELAATNIVFSINSLAFLPMIGLGIAVSSLVGQALGAGRPDLAMRVTRRGL 314
MATE_like_4 cd13144
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; The ...
167-302 3.85e-15

Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.


Pssm-ID: 240549 [Multi-domain]  Cd Length: 434  Bit Score: 76.50  E-value: 3.85e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 167 ASSALIIGGVLGLFQAVFLISAAKPLLSFMGVkhDSPMMRPSQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATV 246
Cdd:cd13144    87 ANNGLLLALLSYLLFLLLGLFGVKPFFRLFTD--DPEILEYGYAYLSWCVIFSFGMFFQILCEKVLQSTGNTITPMIAQL 164
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 247 IGDVTNIILDPIFIFVF----RLGVTGAATAHVISQYLMCGILLWKLMGQVDIFNMSTKH 302
Cdd:cd13144   165 IGAIINIILDPILIFGLfgfpAMGIAGAAIATVIGQILAMFLAFFFLLRKNKDVQPDLRL 224
MATE_like_2 cd13149
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; The ...
52-303 1.49e-14

Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.


Pssm-ID: 240554 [Multi-domain]  Cd Length: 434  Bit Score: 74.65  E-value: 1.49e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341  52 IASLVDTAFIGQIGPVELAAVGVsialfnqvsriaIFPLVSITTSFvaeedacssqqdtvrdhkeCIEIGINnpteetie 131
Cdd:cd13149    27 IFNLTDTFFVGKLGTKELAAISF------------TFPVVLFLNSL-------------------TIGLGIG-------- 67
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 132 lipekhkdslsdefktSSSIfsISKPPAKKRNIPS---ASSALIIGGVLGLFQAVFLISAAKPLLSFMGVkhDSPMMRPS 208
Cdd:cd13149    68 ----------------ASAV--ISRAIGAGDRNKAkrlATDSLILSLLLSVIVSLLGLFTIPPLFSLLGA--SGEILPLI 127
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 209 QRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGDVTNIILDPIFIFVF----RLGVTGAATAHVISQYLMCGI 284
Cdd:cd13149   128 VEYMAIWYLGLVFLVLPMVGNAIIRATGDTKRPSLVMLGAALVNVILDPILIFGFgpipGMGIAGAAIATVISRALGLGA 207
                         250       260
                  ....*....|....*....|..
gi 1063694341 285 ---LLWKLMGQVDIFNMSTKHL 303
Cdd:cd13149   208 alyFLHYHHRLIDFSEPSLKAL 229
MATE_like_12 cd13142
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; The ...
166-385 4.63e-14

Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.


Pssm-ID: 240547 [Multi-domain]  Cd Length: 444  Bit Score: 73.38  E-value: 4.63e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 166 SASSALIIGGVLGLFQAVFLISAAKPLL-SFMGVkhdSPMMRP-SQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLF 243
Cdd:cd13142    89 VAGQTFSFVIILSLILAVLGYILSRPLLlLLIGA---PEEVYPlALAYLRIIFLGLPFMFIFFVFNSLLRGIGDTKTPMK 165
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 244 ATVIGDVTNIILDPIFIFVF----RLGVTGAATAHVISQYLMCGILLWKLM-GQVDIfNMSTKHLQFCRFM-----KNGF 313
Cdd:cd13142   166 IMFGSVLLNVILDPLLIFGIgpfpGLGVAGAALATVISRGIAAVIGLYLLFkGRVGL-KISLRDLKPDWEWlkkifRIGL 244
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1063694341 314 LLLMRVIAVTFCVTLSASLAAREGSTSMAAFQVCLQVWLATSLLADGYAVA-----GQAILAsafakKDYKRAAATA 385
Cdd:cd13142   245 PSSIEQSARALGFTVMTALVAGFGTVVVAAYGIGNRIISLVFLPAFGLARAtstmvGQNLGA-----GQIDRAEEIV 316
MATE_like_6 cd13146
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; The ...
167-384 2.51e-13

Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.


Pssm-ID: 240551 [Multi-domain]  Cd Length: 433  Bit Score: 70.89  E-value: 2.51e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 167 ASSALIIGGVLGLFQAVFLISAAKPLLSFMGVKHDSPMMRPSQRYLSLrsLGAPAVLLSLAAQGVFRGFKDTTTPLFATV 246
Cdd:cd13146    90 ADSGLALALLAATVIVVLGYIFAEPLLQLLGAKGLLLEYALEYFYYSL--PGVPFIMLIGVLMGVLQGEGRTKYMMMAML 167
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 247 IGDVTNIILDPIFIFVFRLGVTGAATAHVISQYLMCGILLWKLMGQvdifnMSTKHLQFcRFMKNGFLLLMRVIAVTFCV 326
Cdd:cd13146   168 IGTVVNIVLDPILIFVFDMGVKGAALATVLAQAISLLYLLYVFLIG-----KSNVTIHI-KLSNISSSVIVEILRVGLPQ 241
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1063694341 327 TLSASLAA-----------REGSTSMAAFQVCLQvwLATSLLADGYAVAGQ--AILASAFAKKDYKRAAAT 384
Cdd:cd13146   242 MLLQLISSisfliynriiiDIDPVAMTAFTLVGR--LDQFILIPIFAISSAllTIAGQNWGRGNYDRMLQI 310
MATE_NorM_like cd13131
Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio ...
54-385 5.20e-13

Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate.


Pssm-ID: 240536 [Multi-domain]  Cd Length: 435  Bit Score: 69.84  E-value: 5.20e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341  54 SLVDTAFIGQIGPVELAAVGVSIALFNQVSrIAIFPLVSITTSFVAEEdacssqqdtvrdhkecieIGINNPTEetielI 133
Cdd:cd13131    23 GFVDTVMAGRLGADDLAAVALGSSLWFPVF-TFGMGLLLAVTPLVAQA------------------HGAGDRRR-----I 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 134 PekhkdslsdefktsssifsiskppakkrniPSASSALIIGGVLGLFQAVFLIsAAKPLLSFMGVKHDspMMRPSQRYLS 213
Cdd:cd13131    79 R------------------------------RAVRQGLWLALLLSLPLMLLLW-LAPPILPLMGQEPE--VAAIARGYLL 125
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 214 LRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGDVTNIILDPIFIF----VFRLGVTGAATAHVISQYLMCGILLW-- 287
Cdd:cd13131   126 ALAWGIPPALLFQVLRSFLDALGRTRPAMVITLLALVLNIPLNYVLIFgkfgLPALGGAGAGLATAIVYWLMFLALAFyi 205
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 288 KLMGQVDIFNMSTKHLQFCRFMKNGFLLLMRVIAVTFCV-----TLSASLAAREGSTSMAAFQVCLQVWLATSLLADGYA 362
Cdd:cd13131   206 RRHKRFRRYRLFARFWRPDWARLKELLRLGLPIGLTIFFevslfAAVALLMGRLGTTVLAAHQIALNFASLLFMVPLGIS 285
                         330       340
                  ....*....|....*....|...
gi 1063694341 363 VAGQAILASAFAKKDYKRAAATA 385
Cdd:cd13131   286 MAATVRVGFALGAGDPADARRAG 308
PRK10367 PRK10367
DNA-damage-inducible SOS response protein; Provisional
162-380 3.17e-11

DNA-damage-inducible SOS response protein; Provisional


Pssm-ID: 182413 [Multi-domain]  Cd Length: 441  Bit Score: 64.37  E-value: 3.17e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 162 RNIPSASSALIIGGVLGLFQAVFLISAAKPL--LSFMGVKHDSPMMRPSQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTT 239
Cdd:PRK10367   80 KNPQALARALVQPLLLALGAGALIALLRTPLidLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYAR 159
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 240 TPLFATVIGDVTNIILDPIFIFVFRLGVTGAATAHVISQYLMCGILLWKLMGQVDIFNMSTKHLQ------FCRFMKNGF 313
Cdd:PRK10367  160 APVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKtawrgnFRRLLALNR 239
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1063694341 314 LLLMRVIAVTFCVTLSASLAAREGSTSMAAFQVCLQVWLATSLLADGYAVAGQAILASAFAKKDYKR 380
Cdd:PRK10367  240 DIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQ 306
MATE_like_14 cd13139
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; The ...
166-364 8.81e-10

Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.


Pssm-ID: 240544 [Multi-domain]  Cd Length: 448  Bit Score: 59.93  E-value: 8.81e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 166 SASSALIIGGVLGLFQAVFLISAAKPLLSFMGVkhdSPM-MRPSQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFA 244
Cdd:cd13139    92 AAVQAILLGVALSLILSILGYFFAEDILSLMGA---SPAvIAEGYGYTRIMFGGNGFIMLLFLINGIFRGAGDAAIAMRS 168
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 245 TVIGDVTNIILDPIFIF----VFRLGVTGAATAHVISQYLMCGILLWKLMgqvdifnMSTKHLQFCR-FMKNGFLLLMRV 319
Cdd:cd13139   169 LWLANGLNIILDPLFIFglgpIPAMGVTGAAIATTIGRSIGVLYQLYHLF-------KGKGRIQIRRrHLKLDWAIIKKI 241
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1063694341 320 IAVTFCVTL-----SAS------LAAREGSTSMAAFQVCLQVWLATSLLADGYAVA 364
Cdd:cd13139   242 IKIAVGGILqfliaSSSwiflvrIIAEFGSTALAGYTIAIRIIMFALLPAWGLSNA 297
MatE pfam01554
MatE; The MatE domain
54-258 3.98e-09

MatE; The MatE domain


Pssm-ID: 334587 [Multi-domain]  Cd Length: 161  Bit Score: 55.26  E-value: 3.98e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341  54 SLVDTAFIGQIGPVELAAVGVSIALFNqvsrIAIFPLVSI---TTSFVAEEdacssqqdtvrdhkecieIGINNPteeti 130
Cdd:pfam01554  13 SLIDTLFVGHLGAVALAAVSIANSIAS----LIFMFLLGLgtaLTTLVGQA------------------LGAGNF----- 65
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 131 elipekhkdslsdefktsssifsiskppakKRNIPSASSALIIGGVLGLFQAVFLISAAKPLLSFMGvkHDSPMMRPSQR 210
Cdd:pfam01554  66 ------------------------------KRAGVALRQGLILGLLLSLPIALLVLLFSEPILSLFG--QDEEVLALAKR 113
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1063694341 211 YLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGDVTNIILDPI 258
Cdd:pfam01554 114 YLRILILGIPFYALQFVLSGFLRGQGDTKPPMYINIISLLLNIPLNYL 161
MATE_like_3 cd13148
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; The ...
170-289 5.49e-09

Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.


Pssm-ID: 240553 [Multi-domain]  Cd Length: 441  Bit Score: 57.67  E-value: 5.49e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 170 ALIIGGVLGLFQAVFLISAAKPLLSFMGVKHDSpmMRPSQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGD 249
Cdd:cd13148    95 ALVIALAGGLVFSLLFLLFGPALYRLLGGRGEA--LDAALAYSNVLFSGAILIWLVNLLAAALRGTGNMRVPALVTLVGA 172
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1063694341 250 VTNIILDPIFIFVF----RLGVTGAATAHVISQYLMCGILLWKL 289
Cdd:cd13148   173 VVQIPLSPGLILGWgplpRLGVAGAAVAAVLYYALAALVLLRYL 216
MATE_like_5 cd13145
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; The ...
167-380 6.41e-09

Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.


Pssm-ID: 240550 [Multi-domain]  Cd Length: 440  Bit Score: 57.22  E-value: 6.41e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 167 ASSALIIGGVLGLFQAVFLISAAKPLLSFMGVKHDSPMMrpSQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATV 246
Cdd:cd13145    88 AAQGLSFGIILAILLTVIGLFAAPPLFRLLGAEGDYLDL--ALEYMDVIFAGSIFFLLNFGLNGILNAQGDTKSYRNFLI 165
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 247 IGDVTNIILDPIFIF----VFRLGVTGAATAHVISQYLMCGILLWKLMGQVDIFNMSTKHL-----QFCRFMKNGF--LL 315
Cdd:cd13145   166 IGFFLNIILDPLFIFggggIPAMGVSGIALATIISQFIGMFYLLYKVRKSGIISGCRLRDFiprldVYKEILKQGFpaSL 245
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1063694341 316 LMRVIAVTFCVTLSAslAAREGSTSMAAFQVCLQVWLATSLLADGYAVAGQAILASAFAKKDYKR 380
Cdd:cd13145   246 NMMTIGLGIFVITYF--VGQFGDEAVAAYGIALRIEQILLLPTIGLNTAVLSIAGQNFGAKKYDR 308
vmrA PRK09575
MATE family efflux transporter;
148-284 4.56e-07

MATE family efflux transporter;


Pssm-ID: 236576 [Multi-domain]  Cd Length: 453  Bit Score: 51.53  E-value: 4.56e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 148 SSSIFSIS---KPPAKKRNIPSASSALIIGgvLGLFQAVFLISAAKPLLSFMGVKHDSPMMrpSQRYLSLRSLGAPAVLL 224
Cdd:PRK09575   72 TGSLLSIKrgeGDLEKAKRILTTGLLLLLL--LGPIVSVILFLFADDFLRAQGAEGRTLEL--ALQYIQVLIWGCLFTLG 147
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063694341 225 SLAAQGVFRgfkDTTTPLFAT---VIGDVTNIILDPIFIFVFRLGVTGAATAHVISQYLMCGI 284
Cdd:PRK09575  148 AIALPFLLR---NDESPNLATglmVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVL 207
MurJ COG0728
Lipid II flippase MurJ/MviN (peptidoglycan biosynthesis) [Cell wall/membrane/envelope ...
168-372 5.14e-07

Lipid II flippase MurJ/MviN (peptidoglycan biosynthesis) [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440492 [Multi-domain]  Cd Length: 503  Bit Score: 51.69  E-value: 5.14e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 168 SSALIIGGVLGLFQAVFLISAAKPLLS--FMGVK---HDSPMMRPSQRYLSLrslGAPAVLLSLAAQGVFRGFKDTTTPL 242
Cdd:COG0728   303 SRGLRLVLLLTLPAAVGLIVLAEPIVRllFERGAftaEDTALTALALAAYAL---GLPAFALVKVLARAFYARQDTRTPV 379
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 243 FATVIGDVTNIILDpiFIFVFRLGVTGAATAHVISQYLMCGILLWKLmgqvdifnmstkhlqfcrfMKNGFLLLMRVIAV 322
Cdd:COG0728   380 RIAVIAVVVNIVLN--LLLVPPLGHAGLALATSLSALVNALLLLVLL-------------------RRRLGGLPLRGILR 438
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1063694341 323 TFCVTLSASLAAregSTSMAAFQVCLQVWLATSLLADGYAVAGQAILASA 372
Cdd:COG0728   439 TLLKLLLASLVM---GAVLWLLLRLLGDWLGGGLLGRLLALALLILVGAA 485
MATE_NorM_like cd13137
Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to ...
170-287 8.61e-07

Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.


Pssm-ID: 240542 [Multi-domain]  Cd Length: 432  Bit Score: 50.59  E-value: 8.61e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 170 ALIIGGVLGLFQAVFLISAAKPLLSFMGvkHDSPMMRPSQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGD 249
Cdd:cd13137   308 ALRLGVLFMGLLGLLLFIFAPPLASLFT--PDPEVIELGVLYLRIVALSQPFLAISFVLSGALRGAGDTRPPLIINLISM 385
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1063694341 250 VTN-IILDPIFIFVFRLGVTGAATAHVISQYLMCGILLW 287
Cdd:cd13137   386 WLVrLPLAYLLGFVLGLGLTGIWLAMFVDTIVRAILLLY 424
MATE_like_9 cd13135
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; The ...
52-285 4.62e-06

Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.


Pssm-ID: 240540 [Multi-domain]  Cd Length: 429  Bit Score: 48.44  E-value: 4.62e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341  52 IASLVDTAFIGQIGPVELAAVGVSIALFNQVsrIAIFPLVSITTSFVAeedacsSQQDTVRDHKEcieigINNpteetie 131
Cdd:cd13135    19 LQMLVDRAFLGRISIRYYSAVGNVTTPFNTI--TGFLGSISIGFTILG------SQSVGAKDIKR-----IND------- 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 132 lipekhkdslsdeFKTSSSIFSIskppakkrnipsassalIIGGVLGLFqavFLISAaKPLLSFMGVkhDSPMMRPSQRY 211
Cdd:cd13135    79 -------------YAISSIVYNS-----------------IIGVILFLL---WLFGA-RIIFVLFGV--DGQILGYSINY 122
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1063694341 212 LSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGDVTNIILDPIFIF----VFRLGVTGAATAHVISQYLMCGIL 285
Cdd:cd13135   123 VRIFSIYLLLLGILFTFSSILQGIGETKPIMYGGIIKNLLNVILDYVLIFgnfgFPRLGIIGAAIATTIANVLNLIIL 200
MATE_MurJ_like cd13123
MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; ...
168-289 7.71e-06

MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Escherichia coli MurJ (MviN) has been identified as essential for murein biosynthesis. It has been suggested that MurJ functions as the peptidoglycan lipid II flippase which is involved in translocation of lipid-anchored peptidoglycan precursors across the cytoplasmic membrane, though results obtained in Bacillus subtilis seem to indicate that its MurJ homologs are not essential for growth. Some MviN family members (e.g. in Mycobacterium tuberculosis) possess an extended C-terminal region that contains an intracellular pseudo-kinase domain and an extracellular domain resembling carbohydrate-binding proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).


Pssm-ID: 240528 [Multi-domain]  Cd Length: 420  Bit Score: 47.83  E-value: 7.71e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 168 SSALIIGGVLGLFQAVFLISAAKPLLS--FMGVKHDSPMMRPSQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFAT 245
Cdd:cd13123   296 SRGLRLVLFLLLPAAVGLIVLAEPIVRllFERGAFTAEDTLMTASALAAYALGLPAFALVKLLSRAFYALKDTKTPVKIA 375
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1063694341 246 VIGDVTNIILDpiFIFVFRLGVTGAATAHVISQYLMCGILLWKL 289
Cdd:cd13123   376 VIAVAVNILLN--LLLIKPLGHVGLALATSLSAWVNALLLLVLL 417
MATE_eukaryotic cd13132
Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family; The integral ...
177-286 4.62e-05

Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress.


Pssm-ID: 240537 [Multi-domain]  Cd Length: 436  Bit Score: 45.26  E-value: 4.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 177 LGLFQAVFLISAAKPLLSFMGVKHDspMMRPSQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGDVTNIILD 256
Cdd:cd13132    92 LCCVPISLLWLNTEPILLLLGQDPE--IARLAGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLN 169
                          90       100       110
                  ....*....|....*....|....*....|
gi 1063694341 257 PIFIFVFRLGVTGAATAHVISQYLMCGILL 286
Cdd:cd13132   170 YLLVFVLGLGFIGAALATSISYWLIVVLLL 199
murJ_mviN TIGR01695
murein biosynthesis integral membrane protein MurJ; This model represents MurJ (previously ...
212-289 2.21e-04

murein biosynthesis integral membrane protein MurJ; This model represents MurJ (previously MviN), a family of integral membrane proteins predicted to have ten or more transmembrane regions. Members have been suggested to act as a lipid II flippase, translocated a precursor of murein. However, it appears FtsW has that activity. Flippase activity for MurJ has not been shown. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273763 [Multi-domain]  Cd Length: 502  Bit Score: 43.08  E-value: 2.21e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1063694341 212 LSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGDVTNIILDPIFIFVFRLGvtGAATAHVISQYLMCGILLWKL 289
Cdd:TIGR01695 350 LAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISVVLNALLSLLLIFPLGLV--GIALATSAASMVSSVLLYLML 425
NorM COG0534
Na+-driven multidrug efflux pump, DinF/NorM/MATE family [Defense mechanisms];
170-287 3.88e-04

Na+-driven multidrug efflux pump, DinF/NorM/MATE family [Defense mechanisms];


Pssm-ID: 440300 [Multi-domain]  Cd Length: 427  Bit Score: 42.44  E-value: 3.88e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 170 ALIIGGVLGLFQAVFLISAAKPLLSFMGvkHDSPMMRPSQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGd 249
Cdd:COG0534   311 ALLLALGIGLLLALLLFLFPEPIIGLFT--DDPEVIALAATYLRIAALFQPFDGLQFVLSGALRGAGDTRFPMIISLLR- 387
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1063694341 250 vtNIILDPIFIFVF---RLGVTGAATAHVISQYLMCGILLW 287
Cdd:COG0534   388 --LWLVRLPLAYLLaflGLGLTGVWLALPIGEVLRALLLLL 426
Polysacc_synt_C pfam14667
Polysaccharide biosynthesis C-terminal domain; This family represents the C-terminal integral ...
211-289 1.09e-03

Polysaccharide biosynthesis C-terminal domain; This family represents the C-terminal integral membrane region of polysaccharide biosynthesis proteins.


Pssm-ID: 434111 [Multi-domain]  Cd Length: 141  Bit Score: 39.09  E-value: 1.09e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1063694341 211 YLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGDVTNIILdpIFIFVFRLGVTGAATAHVISQYLMCGILLWKL 289
Cdd:pfam14667   1 VLQILALSIIFLSLSTVLTSILQGLGRTKLALIALLIGALVKLIL--NLLLIPLFGIVGAAIATVISLLVVALLNLYYL 77
PRK10189 PRK10189
EmmdR/YeeO family multidrug/toxin efflux MATE transporter;
160-290 1.22e-03

EmmdR/YeeO family multidrug/toxin efflux MATE transporter;


Pssm-ID: 182293 [Multi-domain]  Cd Length: 478  Bit Score: 40.87  E-value: 1.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 160 KKRNIPSASSALIIGGVLGLFQAVFLISAAKPLLSFMGVKHDSPMMRPSQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTT 239
Cdd:PRK10189  101 RRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTK 180
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1063694341 240 TPLFATVIGDVTNIILDPIFIF-VFR---LGVTGAATAHVISQYLMCGILLWKLM 290
Cdd:PRK10189  181 IPLLINGGMNILNIIISSILIYgLFSwqgLGFVGAGLGLTISRYIGAVAIIWVLM 235
RfbX COG2244
Membrane protein involved in the export of O-antigen and teichoic acid [Cell wall/membrane ...
170-286 1.97e-03

Membrane protein involved in the export of O-antigen and teichoic acid [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441845 [Multi-domain]  Cd Length: 366  Bit Score: 39.93  E-value: 1.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 170 ALIIGGVLGLFQAVFLISAAKPLLSFMGvkhdSPMMRPSQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGD 249
Cdd:COG2244   256 ALRLLLLLGLPLALGLALLAPPLLSLLF----GPEYAEAAPVLPILALGALFLALSGVLSNLLLALGRTRLLLIISLIGA 331
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1063694341 250 VTNIILdpIFIFVFRLGVTGAATAHVISQYLMCGILL 286
Cdd:COG2244   332 VLNLVL--NLLLIPRYGLVGAAIATLLSYLVLLLLLL 366
MurJ pfam03023
Lipid II flippase MurJ; Peptidoglycan synthesis (PG) biosynthesis involves the formation of ...
212-296 2.43e-03

Lipid II flippase MurJ; Peptidoglycan synthesis (PG) biosynthesis involves the formation of peptidoglycan precursor lipid II (undecaprenyl-pyrophosphate-linked N-acetyl glucosamine-N-acetyl muramic acid-pentapeptide) on the cytosolic face of the cell membrane. Lipid II is then translocated across the membrane and its glycopeptide moiety becomes incorporated into the growing cell wall mesh. MviN, renamed as MurJ, is a lipid II flippase essential for cell wall peptidoglycan synthesis. MurJ belongs to the MVF (mouse virulence factor) family of MOP superfamily transporters, which also includes the MATE (multidrug and toxic compound extrusion) transporter and eukaryotic OLF (oligosaccharidyl-lipid flippase) families. In addition to the canonical MOP transporter core consisting of 12 transmembrane helices (TMs), MurJ has two additional C-terminal TMs (13 and 14) of unknown function. Structural analysis indicates that the N lobe (TMs 1-6) and C lobe (TMs 7-14) are arranged in an inward-facing N-shape conformation, rather than the outward-facing V-shape conformation observed in all existing MATE transporter structures. Furthermore, a hydrophobic groove is formed by two C-terminal transmembrane helices, which leads into a large central cavity that is mostly cationic. Mutagenesis studies, revealed a solvent-exposed cavity that is essential for function. Mutation of conserved residues (Ser17, Arg18, Arg24, Arg52, and Arg255) at the proximal site failed to complement MurJ function, consistent with the idea that these residues are important for recognizing the diphosphate and/or sugar moieties of lipid II. It has also been suggested that the chloride ion in the central cavity and a zinc ion at the beginning of TM 7 might be functionally important.


Pssm-ID: 397249 [Multi-domain]  Cd Length: 451  Bit Score: 39.97  E-value: 2.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 212 LSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGDVTNIILDpiFIFVFRLGVTGAATAHVISqYLMCGILLWKLMG 291
Cdd:pfam03023 324 LAAYALGLIPYALVKLLSRVFYAREDTKTPFKISLISAVLNILLS--LLLLPPLGVAGLALATSLS-SLIGLVFLYYILR 400

                  ....*
gi 1063694341 292 QVDIF 296
Cdd:pfam03023 401 KRLGG 405
PRK01766 PRK01766
multidrug efflux protein; Reviewed
170-287 5.38e-03

multidrug efflux protein; Reviewed


Pssm-ID: 234981 [Multi-domain]  Cd Length: 456  Bit Score: 38.64  E-value: 5.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063694341 170 ALIIGGVLGLFQAVFLISAAKPLLSFMGVkhDSPMMRPSQRYLSLRSLGAPAVLLSLaaqgVFRGFKD----TTTPLFAT 245
Cdd:PRK01766   94 GLWLALFLSVLIMLVLYNAVPPILNMMNL--EPEVADIAVGYLHALLWGIPAYLLYQ----VLRSFIDglgkTKPTMVIG 167
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1063694341 246 VIGDVTNIILDPIFIF----VFRLGVTGAATAHVISQYLMCGILLW 287
Cdd:PRK01766  168 FLGLLINIPLNYIFIYgkfgFPELGGVGCGVATAIVYWVMFLAMLI 213
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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