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Conserved domains on  [gi|1063690294|ref|NP_001321374|]
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Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 1000136)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00113 super family cl33413
leucine-rich repeat receptor-like protein kinase; Provisional
 7-453 2.54e-55

leucine-rich repeat receptor-like protein kinase; Provisional


The actual alignment was detected with superfamily member PLN00113:

Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 198.92  E-value: 2.54e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294   7 PLFIFAFVIFL---RCLspieaatcHPDDEAGLLAFKSGItQDPTGILSSWKKGTDCCSWKGVGCL-TNRVTGLtingqs 82
Cdd:PLN00113   10 PYLIFMLFFLFlnfSML--------HAEELELLLSFKSSI-NDPLKYLSNWNSSADVCLWQGITCNnSSRVVSI------ 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294  83 DVTGSFLSGTISPSLAKLQHLVGIYFTNlRNITGSFPQFLFQ-----------------------LPNVKQVYFTNSRLS 139
Cdd:PLN00113   75 DLSGKNISGKISSAIFRLPYIQTINLSN-NQLSGPIPDDIFTtssslrylnlsnnnftgsiprgsIPNLETLDLSNNMLS 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 140 GPLPANIGALSELGELSLDGNLFTGPIPSSISNLTRLYLLNLGDNLLTGTIPLGLANLKIL--LSLNFGN---------- 207
Cdd:PLN00113  154 GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLkwIYLGYNNlsgeipyeig 233

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 208 ------------NRLSETIPDIFKSMQKLQSLTLSRNKFSGNLPPSIASLKPILNyLDLSQNNLSGTIPTFLSNFKVLDS 275
Cdd:PLN00113  234 gltslnhldlvyNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS-LDLSDNSLSGEIPELVIQLQNLEI 312

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 276 LDLSRNRFSGVVPKSLANMPKLFHLNLSHNFLTGPLPA-MKNVDGLATLDLSYNQFHLKtIPKWVTSSPSMYSLKL---- 350
Cdd:PLN00113  313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKnLGKHNNLTVLDLSTNNLTGE-IPEGLCSSGNLFKLILfsns 391

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 351 VKCGINMSLDNWKPVRpniyfYIDLSENEISGSLTWFFNLAHNLYEFQASGNKL-------RFDMGKLNL---------- 413
Cdd:PLN00113  392 LEGEIPKSLGACRSLR-----RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLqgrinsrKWDMPSLQMlslarnkffg 466

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|
gi 1063690294 414 -------SERLESLDLSRNLIFGKVP---MTVAKLQKLNLSHNHLCGKLP 453
Cdd:PLN00113  467 glpdsfgSKRLENLDLSRNQFSGAVPrklGSLSELMQLKLSENKLSGEIP 516
 
Name Accession Description Interval E-value
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 7-453 2.54e-55

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 198.92  E-value: 2.54e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294   7 PLFIFAFVIFL---RCLspieaatcHPDDEAGLLAFKSGItQDPTGILSSWKKGTDCCSWKGVGCL-TNRVTGLtingqs 82
Cdd:PLN00113   10 PYLIFMLFFLFlnfSML--------HAEELELLLSFKSSI-NDPLKYLSNWNSSADVCLWQGITCNnSSRVVSI------ 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294  83 DVTGSFLSGTISPSLAKLQHLVGIYFTNlRNITGSFPQFLFQ-----------------------LPNVKQVYFTNSRLS 139
Cdd:PLN00113   75 DLSGKNISGKISSAIFRLPYIQTINLSN-NQLSGPIPDDIFTtssslrylnlsnnnftgsiprgsIPNLETLDLSNNMLS 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 140 GPLPANIGALSELGELSLDGNLFTGPIPSSISNLTRLYLLNLGDNLLTGTIPLGLANLKIL--LSLNFGN---------- 207
Cdd:PLN00113  154 GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLkwIYLGYNNlsgeipyeig 233

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 208 ------------NRLSETIPDIFKSMQKLQSLTLSRNKFSGNLPPSIASLKPILNyLDLSQNNLSGTIPTFLSNFKVLDS 275
Cdd:PLN00113  234 gltslnhldlvyNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS-LDLSDNSLSGEIPELVIQLQNLEI 312

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 276 LDLSRNRFSGVVPKSLANMPKLFHLNLSHNFLTGPLPA-MKNVDGLATLDLSYNQFHLKtIPKWVTSSPSMYSLKL---- 350
Cdd:PLN00113  313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKnLGKHNNLTVLDLSTNNLTGE-IPEGLCSSGNLFKLILfsns 391

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 351 VKCGINMSLDNWKPVRpniyfYIDLSENEISGSLTWFFNLAHNLYEFQASGNKL-------RFDMGKLNL---------- 413
Cdd:PLN00113  392 LEGEIPKSLGACRSLR-----RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLqgrinsrKWDMPSLQMlslarnkffg 466

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|
gi 1063690294 414 -------SERLESLDLSRNLIFGKVP---MTVAKLQKLNLSHNHLCGKLP 453
Cdd:PLN00113  467 glpdsfgSKRLENLDLSRNQFSGAVPrklGSLSELMQLKLSENKLSGEIP 516
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
36-328 3.52e-22

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 98.47  E-value: 3.52e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294  36 LLAFKSGITQDPTGILSSWKKGTDCCSWKGVGCLTNRVTGLTINGQSDVTGSFLSGTISPSLAKLQHLVGI-YFTNLRNI 114
Cdd:COG4886    39 LLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEELsNLTNLESL 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 115 T------GSFPQFLFQLPNVKQVYFTNSRLSgPLPANIGALSELGELSLDGNLFTGpIPSSISNLTRLYLLNLGDNLLTg 188
Cdd:COG4886   119 DlsgnqlTDLPEELANLTNLKELDLSNNQLT-DLPEPLGNLTNLKSLDLSNNQLTD-LPEELGNLTNLKELDLSNNQIT- 195

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 189 TIPLGLANLKILLSLNFGNNRLSEtIPDIFKSMQKLQSLTLSRNKFSGnlPPSIASLkPILNYLDLSQNNLSgTIPtFLS 268
Cdd:COG4886   196 DLPEPLGNLTNLEELDLSGNQLTD-LPEPLANLTNLETLDLSNNQLTD--LPELGNL-TNLEELDLSNNQLT-DLP-PLA 269

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 269 NFKVLDSLDLSRNRFSGVVPKSLANMPKLFHLNLSHNFLTGPLPAMKNVDGLATLDLSYN 328
Cdd:COG4886   270 NLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLL 329
LRRNT_2 pfam08263
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ...
 29-68 6.57e-10

Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.


Pssm-ID: 462411 [Multi-domain]  Cd Length: 41  Bit Score: 54.22  E-value: 6.57e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1063690294  29 HPDDEAGLLAFKSGITqDPTGILSSWK-KGTDCCSWKGVGC 68
Cdd:pfam08263   1 LNDDGQALLAFKSSLN-DPPGALSSWNsSSSDPCSWTGVTC 40
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 168-305 2.41e-09

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 57.49  E-value: 2.41e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 168 SSISNLTRLYLLNlgdNLLTgTIPlGLANLKILLSLNFGNNRLSEtipdI--FKSMQKLQSLTLSRNkfsgNLPP----- 240
Cdd:cd21340    43 EFLTNLTHLYLQN---NQIE-KIE-NLENLVNLKKLYLGGNRISV----VegLENLTNLEELHIENQ----RLPPgeklt 109

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1063690294 241 ----SIASLKPILNYLDLSQNNLsgTIPTFLSNFKVLDSLDLSRNRFSGV--VPKSLANMPKLFHLNLSHN 305
Cdd:cd21340   110 fdprSLAALSNSLRVLNISGNNI--DSLEPLAPLRNLEQLDASNNQISDLeeLLDLLSSWPSLRELDLTGN 178
 
Name Accession Description Interval E-value
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 7-453 2.54e-55

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 198.92  E-value: 2.54e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294   7 PLFIFAFVIFL---RCLspieaatcHPDDEAGLLAFKSGItQDPTGILSSWKKGTDCCSWKGVGCL-TNRVTGLtingqs 82
Cdd:PLN00113   10 PYLIFMLFFLFlnfSML--------HAEELELLLSFKSSI-NDPLKYLSNWNSSADVCLWQGITCNnSSRVVSI------ 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294  83 DVTGSFLSGTISPSLAKLQHLVGIYFTNlRNITGSFPQFLFQ-----------------------LPNVKQVYFTNSRLS 139
Cdd:PLN00113   75 DLSGKNISGKISSAIFRLPYIQTINLSN-NQLSGPIPDDIFTtssslrylnlsnnnftgsiprgsIPNLETLDLSNNMLS 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 140 GPLPANIGALSELGELSLDGNLFTGPIPSSISNLTRLYLLNLGDNLLTGTIPLGLANLKIL--LSLNFGN---------- 207
Cdd:PLN00113  154 GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLkwIYLGYNNlsgeipyeig 233

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 208 ------------NRLSETIPDIFKSMQKLQSLTLSRNKFSGNLPPSIASLKPILNyLDLSQNNLSGTIPTFLSNFKVLDS 275
Cdd:PLN00113  234 gltslnhldlvyNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS-LDLSDNSLSGEIPELVIQLQNLEI 312

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 276 LDLSRNRFSGVVPKSLANMPKLFHLNLSHNFLTGPLPA-MKNVDGLATLDLSYNQFHLKtIPKWVTSSPSMYSLKL---- 350
Cdd:PLN00113  313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKnLGKHNNLTVLDLSTNNLTGE-IPEGLCSSGNLFKLILfsns 391

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 351 VKCGINMSLDNWKPVRpniyfYIDLSENEISGSLTWFFNLAHNLYEFQASGNKL-------RFDMGKLNL---------- 413
Cdd:PLN00113  392 LEGEIPKSLGACRSLR-----RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLqgrinsrKWDMPSLQMlslarnkffg 466

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|
gi 1063690294 414 -------SERLESLDLSRNLIFGKVP---MTVAKLQKLNLSHNHLCGKLP 453
Cdd:PLN00113  467 glpdsfgSKRLENLDLSRNQFSGAVPrklGSLSELMQLKLSENKLSGEIP 516
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 83-331 3.34e-36

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 142.68  E-value: 3.34e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294  83 DVTGSFLSGTISPSLAKLQHLVGIY-FTNlrNITGSFPQFLFQLPNVKQVYFTNSRLSGPLPANIGALSELGELSLDGNL 161
Cdd:PLN00113  290 DLSDNSLSGEIPELVIQLQNLEILHlFSN--NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 162 FTGPIPSSI---SNLTRLYLLN---------------------LGDNLLTGTIPLGLANLKILLSLNFGNNRLSETIPDI 217
Cdd:PLN00113  368 LTGEIPEGLcssGNLFKLILFSnslegeipkslgacrslrrvrLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSR 447

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 218 FKSMQKLQSLTLSRNKFSGNLPPSIASLK----------------------PILNYLDLSQNNLSGTIPTFLSNFKVLDS 275
Cdd:PLN00113  448 KWDMPSLQMLSLARNKFFGGLPDSFGSKRlenldlsrnqfsgavprklgslSELMQLKLSENKLSGEIPDELSSCKKLVS 527

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1063690294 276 LDLSRNRFSGVVPKSLANMPKLFHLNLSHNFLTGPLPA-MKNVDGLATLDLSYNQFH 331
Cdd:PLN00113  528 LDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKnLGNVESLVQVNISHNHLH 584
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 89-312 2.43e-31

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 128.04  E-value: 2.43e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294  89 LSGTISPSLAKLQHLVGIYFTNlRNITGSFPQFLFQLPNV-KQVYFTNSrLSGPLPANIGALSELGELSLDGNLFTGPIP 167
Cdd:PLN00113  344 FSGEIPKNLGKHNNLTVLDLST-NNLTGEIPEGLCSSGNLfKLILFSNS-LEGEIPKSLGACRSLRRVRLQDNSFSGELP 421

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 168 SSISNLTRLYLLNLGDNLLTGTIP-----------LGLANLKI------------LLSLNFGNNRLSETIPDIFKSMQKL 224
Cdd:PLN00113  422 SEFTKLPLVYFLDISNNNLQGRINsrkwdmpslqmLSLARNKFfgglpdsfgskrLENLDLSRNQFSGAVPRKLGSLSEL 501

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 225 QSLTLSRNKFSGNLPPSIASLKPILNyLDLSQNNLSGTIPTFLSNFKVLDSLDLSRNRFSGVVPKSLANMPKLFHLNLSH 304
Cdd:PLN00113  502 MQLKLSENKLSGEIPDELSSCKKLVS-LDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISH 580


                  ....*...
gi 1063690294 305 NFLTGPLP 312
Cdd:PLN00113  581 NHLHGSLP 588
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 89-292 7.23e-26

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 111.48  E-value: 7.23e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294  89 LSGTISPSLAKLQHLVGIYFTNlRNITGSFPQFLFQLPNVKQVYFTNSRLSGPLPANIGALSELGELSLDGNLFTGPIPS 168
Cdd:PLN00113  392 LEGEIPKSLGACRSLRRVRLQD-NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 169 SiSNLTRLYLLNLGDNLLTGTIPLGLANLKILLSLNFGNNRLSETIPDIFKSMQKLQSLTLSRNKFSGNLPPSIASLkPI 248
Cdd:PLN00113  471 S-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM-PV 548

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1063690294 249 LNYLDLSQNNLSGTIPTFLSNFKVLDSLDLSRNRFSGVVPKSLA 292
Cdd:PLN00113  549 LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGA 592
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
36-328 3.52e-22

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 98.47  E-value: 3.52e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294  36 LLAFKSGITQDPTGILSSWKKGTDCCSWKGVGCLTNRVTGLTINGQSDVTGSFLSGTISPSLAKLQHLVGI-YFTNLRNI 114
Cdd:COG4886    39 LLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEELsNLTNLESL 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 115 T------GSFPQFLFQLPNVKQVYFTNSRLSgPLPANIGALSELGELSLDGNLFTGpIPSSISNLTRLYLLNLGDNLLTg 188
Cdd:COG4886   119 DlsgnqlTDLPEELANLTNLKELDLSNNQLT-DLPEPLGNLTNLKSLDLSNNQLTD-LPEELGNLTNLKELDLSNNQIT- 195

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 189 TIPLGLANLKILLSLNFGNNRLSEtIPDIFKSMQKLQSLTLSRNKFSGnlPPSIASLkPILNYLDLSQNNLSgTIPtFLS 268
Cdd:COG4886   196 DLPEPLGNLTNLEELDLSGNQLTD-LPEPLANLTNLETLDLSNNQLTD--LPELGNL-TNLEELDLSNNQLT-DLP-PLA 269

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 269 NFKVLDSLDLSRNRFSGVVPKSLANMPKLFHLNLSHNFLTGPLPAMKNVDGLATLDLSYN 328
Cdd:COG4886   270 NLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLL 329
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
81-336 9.69e-21

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 94.23  E-value: 9.69e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294  81 QSDVTGSFLSGTISPSLAKLQHLVGIYFTNLRNITGSFPQFLFQLPNVKQVYFTNSRLSGPLPANIGALSE-LGELSLDG 159
Cdd:COG4886     2 LLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLlLLLLSLLL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 160 NLFTGPIPSSISNLTRLYLLNLGDNLltgtiplGLANLKILLSLNFGNNRLSEtIPDIFKSMQKLQSLTLSRNKFSgNLP 239
Cdd:COG4886    82 LSLLLLGLTDLGDLTNLTELDLSGNE-------ELSNLTNLESLDLSGNQLTD-LPEELANLTNLKELDLSNNQLT-DLP 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 240 PSIASLKPiLNYLDLSQNNLSgTIPTFLSNFKVLDSLDLSRNRFSgVVPKSLANMPKLFHLNLSHNFLTGPLPAMKNVDG 319
Cdd:COG4886   153 EPLGNLTN-LKSLDLSNNQLT-DLPEELGNLTNLKELDLSNNQIT-DLPEPLGNLTNLEELDLSGNQLTDLPEPLANLTN 229

                         250
                  ....*....|....*..
gi 1063690294 320 LATLDLSYNQfhLKTIP 336
Cdd:COG4886   230 LETLDLSNNQ--LTDLP 244
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 83-245 9.93e-17

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 83.36  E-value: 9.93e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294  83 DVTGSFLSGTIS------PSLAKLQHLVGIYFTNLRNITGSfpqflfqlPNVKQVYFTNSRLSGPLPANIGALSELGELS 156
Cdd:PLN00113  434 DISNNNLQGRINsrkwdmPSLQMLSLARNKFFGGLPDSFGS--------KRLENLDLSRNQFSGAVPRKLGSLSELMQLK 505

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 157 LDGNLFTGPIPSSISNLTRLYLLNLGDNLLTGTIPLGLANLKILLSLNFGNNRLSETIPDIFKSMQKLQSLTLSRNKFSG 236
Cdd:PLN00113  506 LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585


                  ....*....
gi 1063690294 237 NLPPSIASL 245
Cdd:PLN00113  586 SLPSTGAFL 594
PLN03150 PLN03150
hypothetical protein; Provisional
 203-295 5.27e-13

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 71.00  E-value: 5.27e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 203 LNFGNNRLSETIPDIFKSMQKLQSLTLSRNKFSGNLPPSIASLkPILNYLDLSQNNLSGTIPTFLSNFKVLDSLDLSRNR 282
Cdd:PLN03150  423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

                          90
                  ....*....|...
gi 1063690294 283 FSGVVPKSLANMP 295
Cdd:PLN03150  502 LSGRVPAALGGRL 514
PLN03150 PLN03150
hypothetical protein; Provisional
 63-208 3.54e-10

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 62.14  E-value: 3.54e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294  63 WKGVGCLTNR------VTGLTINGQSdvtgsfLSGTISPSLAKLQHLVGIyftNLrnitgsfpqflfqlpnvkqvyfTNS 136
Cdd:PLN03150  404 WSGADCQFDStkgkwfIDGLGLDNQG------LRGFIPNDISKLRHLQSI---NL----------------------SGN 452

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063690294 137 RLSGPLPANIGALSELGELSLDGNLFTGPIPSSISNLTRLYLLNLGDNLLTGTIPLGLANLKIL-LSLNFGNN 208
Cdd:PLN03150  453 SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHrASFNFTDN 525
PLN03150 PLN03150
hypothetical protein; Provisional
 155-253 4.33e-10

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 62.14  E-value: 4.33e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 155 LSLDGNLFTGPIPSSISNLTRLYLLNLGDNLLTGTIPLGLANLKILLSLNFGNNRLSETIPDIFKSMQKLQSLTLSRNKF 234
Cdd:PLN03150  423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502

                          90       100
                  ....*....|....*....|..
gi 1063690294 235 SGNLPPSIASL---KPILNYLD 253
Cdd:PLN03150  503 SGRVPAALGGRllhRASFNFTD 524
LRRNT_2 pfam08263
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ...
 29-68 6.57e-10

Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.


Pssm-ID: 462411 [Multi-domain]  Cd Length: 41  Bit Score: 54.22  E-value: 6.57e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1063690294  29 HPDDEAGLLAFKSGITqDPTGILSSWK-KGTDCCSWKGVGC 68
Cdd:pfam08263   1 LNDDGQALLAFKSSLN-DPPGALSSWNsSSSDPCSWTGVTC 40
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 168-305 2.41e-09

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 57.49  E-value: 2.41e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 168 SSISNLTRLYLLNlgdNLLTgTIPlGLANLKILLSLNFGNNRLSEtipdI--FKSMQKLQSLTLSRNkfsgNLPP----- 240
Cdd:cd21340    43 EFLTNLTHLYLQN---NQIE-KIE-NLENLVNLKKLYLGGNRISV----VegLENLTNLEELHIENQ----RLPPgeklt 109

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1063690294 241 ----SIASLKPILNYLDLSQNNLsgTIPTFLSNFKVLDSLDLSRNRFSGV--VPKSLANMPKLFHLNLSHN 305
Cdd:cd21340   110 fdprSLAALSNSLRVLNISGNNI--DSLEPLAPLRNLEQLDASNNQISDLeeLLDLLSSWPSLRELDLTGN 178
PLN03150 PLN03150
hypothetical protein; Provisional
 135-215 3.28e-09

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 59.06  E-value: 3.28e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 135 NSRLSGPLPANIGALSELGELSLDGNLFTGPIPSSISNLTRLYLLNLGDNLLTGTIPLGLANLKILLSLNFGNNRLSETI 214
Cdd:PLN03150  427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506


                  .
gi 1063690294 215 P 215
Cdd:PLN03150  507 P 507
LRR_8 pfam13855
Leucine rich repeat;
249-305 2.28e-08

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 50.60  E-value: 2.28e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1063690294 249 LNYLDLSQNNLSGTIPTFLSNFKVLDSLDLSRNRFSGVVPKSLANMPKLFHLNLSHN 305
Cdd:pfam13855   3 LRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGN 59
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
92-279 2.40e-08

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 56.10  E-value: 2.40e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294  92 TISPSLAKLQHLVGIYFTNlrNITGSFPQFLFQLPNVKQVYFTNSRLSgPLPANIGALSELGELSLDGNLFTgPIPSsIS 171
Cdd:COG4886   173 DLPEELGNLTNLKELDLSN--NQITDLPEPLGNLTNLEELDLSGNQLT-DLPEPLANLTNLETLDLSNNQLT-DLPE-LG 247

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 172 NLTRLYLLNLGDNLLTgTIPlGLANLKILLSLNFGNNRLSETIPDIFKSMQKLQSLTLSRNKFSGNLPPSIASLKPILNY 251
Cdd:COG4886   248 NLTNLEELDLSNNQLT-DLP-PLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLL 325

                         170       180
                  ....*....|....*....|....*...
gi 1063690294 252 LDLSQNNLSGTIPTFLSNFKVLDSLDLS 279
Cdd:COG4886   326 LLLLLKGLLVTLTTLALSLSLLALLTLL 353
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 149-330 1.71e-06

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 49.66  E-value: 1.71e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 149 LSELGELSLDGNLFTGP----IPSSISNLTRLYLLNLGDNLlTGTIPLGLANLkillslnfgnnrlsetiPDIFKSMQKL 224
Cdd:cd00116    22 LLCLQVLRLEGNTLGEEaakaLASALRPQPSLKELCLSLNE-TGRIPRGLQSL-----------------LQGLTKGCGL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 225 QSLTLSRNKFSGNLPPSIASL--KPILNYLDLSQNNLSGTIPTFL-----SNFKVLDSLDLSRNRFSGVVPKSLAN---- 293
Cdd:cd00116    84 QELDLSDNALGPDGCGVLESLlrSSSLQELKLNNNGLGDRGLRLLakglkDLPPALEKLVLGRNRLEGASCEALAKalra 163

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1063690294 294 MPKLFHLNLSHNFLTGP-----LPAMKNVDGLATLDLSYNQF 330
Cdd:cd00116   164 NRDLKELNLANNGIGDAgiralAEGLKANCNLEVLDLNNNGL 205
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 83-210 2.30e-06

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 50.23  E-value: 2.30e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294  83 DVTGSFLSGTISPSLAKLQHLVGIYFTNlRNITGSFPQFLFQLPNVKQVYFTNSRLSGPLPANIGALSELGELSLDGNLF 162
Cdd:PLN00113  481 DLSRNQFSGAVPRKLGSLSELMQLKLSE-NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1063690294 163 TGPIPSSISNLTRLYLLNLGDNLLTGTIPLGLANLKILLSLNFGNNRL 210
Cdd:PLN00113  560 SGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDL 607
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 252-454 2.38e-06

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 50.23  E-value: 2.38e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 252 LDLSQNNLSGTIPTFLSNFKVLDSLDLSRNRFSGVVPKSLANMP-KLFHLNLSHNFLTGPLPAmknvdglatldlsynqf 330
Cdd:PLN00113   74 IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSsSLRYLNLSNNNFTGSIPR----------------- 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 331 hlktipkwvTSSPSMYSLklvkcginmsldnwkpvrpniyfyiDLSENEISGsltwffnlahnlyefqasgnKLRFDMGK 410
Cdd:PLN00113  137 ---------GSIPNLETL-------------------------DLSNNMLSG--------------------EIPNDIGS 162

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1063690294 411 LNlseRLESLDLSRNLIFGKVPMTVAKLQKL---NLSHNHLCGKLPV 454
Cdd:PLN00113  163 FS---SLKVLDLGGNVLVGKIPNSLTNLTSLeflTLASNQLVGQIPR 206
PLN03150 PLN03150
hypothetical protein; Provisional
 272-330 1.48e-05

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 47.50  E-value: 1.48e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 272 VLDSLDLSRNRFSGVVPKSLANMPKLFHLNLSHNFLTGPLPA-MKNVDGLATLDLSYNQF 330
Cdd:PLN03150  419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPsLGSITSLEVLDLSYNSF 478
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 108-385 2.36e-05

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 47.18  E-value: 2.36e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294  108 FTNLRNITGSFPQFLFQLP------NVKQVYFTNSRLSGPLPANIGALSELGELSLDGNLFTGPIPSSIsNLTRLYLLNL 181
Cdd:PLN03210   633 LTGLRNIDLRGSKNLKEIPdlsmatNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNL 711

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294  182 GdnlltgtiplGLANLKILL--SLNFGNNRLSETIPDIFKS---MQKLQSLTLSRNKFSGN------LPPSIASLKPILN 250
Cdd:PLN03210   712 S----------GCSRLKSFPdiSTNISWLDLDETAIEEFPSnlrLENLDELILCEMKSEKLwervqpLTPLMTMLSPSLT 781

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294  251 YLDLSQNNLSGTIPTFLSNFKVLDSLDLSRNRFSGVVPKSLaNMPKLFHLNLSHNFLTGPLPAMKNvdGLATLDLSYNQf 330
Cdd:PLN03210   782 RLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIST--NISDLNLSRTG- 857

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1063690294  331 hLKTIPKWVTSSPSMYSLKLVKCginmslDNWKPVRPNIYFYIDLSENEIS--GSLT 385
Cdd:PLN03210   858 -IEEVPWWIEKFSNLSFLDMNGC------NNLQRVSLNISKLKHLETVDFSdcGALT 907
LRR_8 pfam13855
Leucine rich repeat;
273-330 2.55e-05

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 41.74  E-value: 2.55e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1063690294 273 LDSLDLSRNRFSGVVPKSLANMPKLFHLNLSHNFLTGPLP-AMKNVDGLATLDLSYNQF 330
Cdd:pfam13855   3 LRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPgAFSGLPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
174-234 4.22e-05

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 41.36  E-value: 4.22e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1063690294 174 TRLYLLNLGDNLLTGTIPLGLANLKILLSLNFGNNRLSETIPDIFKSMQKLQSLTLSRNKF 234
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
201-448 8.82e-05

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 44.92  E-value: 8.82e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 201 LSLNFGNNRLSETIPDIFKSMQKLQSLTLSRNKFSGNLPPSIASLKPILNYLDLSQNNLSGTIPTFLSNFKVLDSLDLSR 280
Cdd:COG4886     1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 281 NRFSG-VVPKSLANMPKLFHLNLSHNFLTGPLPAmknvdgLATLDLSYNQfhLKTIPKWVTSSPSMYSLKLVKCGINmSL 359
Cdd:COG4886    81 LLSLLlLGLTDLGDLTNLTELDLSGNEELSNLTN------LESLDLSGNQ--LTDLPEELANLTNLKELDLSNNQLT-DL 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 360 DNWKPVRPNIYfYIDLSENEISGSLTWFFNLaHNLYEFQASGNKLR---FDMGKLnlsERLESLDLSRNLIfGKVPMTVA 436
Cdd:COG4886   152 PEPLGNLTNLK-SLDLSNNQLTDLPEELGNL-TNLKELDLSNNQITdlpEPLGNL---TNLEELDLSGNQL-TDLPEPLA 225

                         250
                  ....*....|....*
gi 1063690294 437 ---KLQKLNLSHNHL 448
Cdd:COG4886   226 nltNLETLDLSNNQL 240
LRR_8 pfam13855
Leucine rich repeat;
202-259 1.88e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 39.43  E-value: 1.88e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1063690294 202 SLNFGNNRLSETIPDIFKSMQKLQSLTLSRNKFSGNLPPSIASLkPILNYLDLSQNNL 259
Cdd:pfam13855   5 SLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGL-PSLRYLDLSGNRL 61
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
 173-329 2.35e-04

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 43.63  E-value: 2.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 173 LTRLYLLNLGDNLLT--GTIPLG--LANLKILLSLNFGNNRLSET----IPDIFKSMQKLQSLTLSRNKFSG----NLPP 240
Cdd:COG5238   235 NKSLTTLDLSNNQIGdeGVIALAeaLKNNTTVETLYLSGNQIGAEgaiaLAKALQGNTTLTSLDLSVNRIGDegaiALAE 314

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 241 SIASLKPiLNYLDLSQNNLS--GTIPTF--LSNFKVLDSLDLSRNRFSG----VVPKSLANMPKLFHLNLSHNFLTG--- 309
Cdd:COG5238   315 GLQGNKT-LHTLNLAYNGIGaqGAIALAkaLQENTTLHSLDLSDNQIGDegaiALAKYLEGNTTLRELNLGKNNIGKqga 393

                         170       180
                  ....*....|....*....|.
gi 1063690294 310 -PLPAMKNVDGLATLDLSYNQ 329
Cdd:COG5238   394 eALIDALQTNRLHTLILDGNL 414
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
92-278 5.25e-04

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 42.23  E-value: 5.25e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294  92 TISPSLAKLQHLVGIYFTNlrNITGSFPQFLFQLPNVKQVYFTNSRLSgPLPaNIGALSELGELSLDGNLFTGpIPSSiS 171
Cdd:COG4886   196 DLPEPLGNLTNLEELDLSG--NQLTDLPEPLANLTNLETLDLSNNQLT-DLP-ELGNLTNLEELDLSNNQLTD-LPPL-A 269

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 172 NLTRLYLLNLGDNLLTGTIPLGLANLKILLSLNFGNNRLSETIPDIFKSMQKLQSLTLSRNKFSGNLPPSIASLKPILNY 251
Cdd:COG4886   270 NLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLAL 349

                         170       180
                  ....*....|....*....|....*..
gi 1063690294 252 LDLSQNNLSGTIPTFLSNFKVLDSLDL 278
Cdd:COG4886   350 LTLLLLLNLLSLLLTLLLTLGLLGLLE 376
PLN03150 PLN03150
hypothetical protein; Provisional
 392-476 5.45e-04

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 42.50  E-value: 5.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 392 HNLYEFQASGNKLRfdmGKLNLS----ERLESLDLSRNLIFGKVPMTVAK---LQKLNLSHNHLCGKLPV---------T 455
Cdd:PLN03150  442 RHLQSINLSGNSIR---GNIPPSlgsiTSLEVLDLSYNSFNGSIPESLGQltsLRILNLNGNSLSGRVPAalggrllhrA 518

                          90       100
                  ....*....|....*....|..
gi 1063690294 456 KFpasAFVGNDCLCGSP-LSPC 476
Cdd:PLN03150  519 SF---NFTDNAGLCGIPgLRAC 537
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 166-388 9.72e-04

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 41.78  E-value: 9.72e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294  166 IPSSISNLTRLYLLNLGDNLLTGTIPLGLaNLKILLSLNF-GNNRLsETIPDIfksMQKLQSLTLSRNKFSgNLPPSIAS 244
Cdd:PLN03210   794 LPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLsGCSRL-RTFPDI---STNISDLNLSRTGIE-EVPWWIEK 867

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294  245 LKpILNYLDLSQ-NNLSGTIPTfLSNFKVLDSLDLSR---------NRFSGVVPKSLAN----MPKLFHLNLSHNFLTGP 310
Cdd:PLN03210   868 FS-NLSFLDMNGcNNLQRVSLN-ISKLKHLETVDFSDcgalteaswNGSPSEVAMATDNihskLPSTVCINFINCFNLDQ 945

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1063690294  311 LPAMKNVDGLATLDLSYNQfhlktIPKWVTSSPSMYSLklvkcgINMSLDNWKPVRPNIYFYIDLSENEISGSLTWFF 388
Cdd:PLN03210   946 EALLQQQSIFKQLILSGEE-----VPSYFTHRTTGASL------TNIPLLHISPCQPFFRFRACAVVDSESFFIISVS 1012
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 85-284 2.06e-03

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 40.03  E-value: 2.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294  85 TGSFLSGTIS-----PSLAKLQHLVgiYFTNLRNITGSFP-QFLFQLPNVKQVYFTNSRLS-GPLPANIGALSE----LG 153
Cdd:cd00116    63 TGRIPRGLQSllqglTKGCGLQELD--LSDNALGPDGCGVlESLLRSSSLQELKLNNNGLGdRGLRLLAKGLKDlppaLE 140

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063690294 154 ELSLDGNLFTG----PIPSSISNLTRLYLLNLGDNLLTG----TIPLGLANLKILLSLNFGNNRLSET----IPDIFKSM 221
Cdd:cd00116   141 KLVLGRNRLEGasceALAKALRANRDLKELNLANNGIGDagirALAEGLKANCNLEVLDLNNNGLTDEgasaLAETLASL 220

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1063690294 222 QKLQSLTLSRNKFSG----NLPPSIASLKPILNYLDLSQNNL----SGTIPTFLSNFKVLDSLDLSRNRFS 284
Cdd:cd00116   221 KSLEVLNLGDNNLTDagaaALASALLSPNISLLTLSLSCNDItddgAKDLAEVLAEKESLLELDLRGNKFG 291
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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