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Conserved domains on  [gi|1063695880|ref|NP_001321234|]
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abscisic acid (aba)-deficient 4 [Arabidopsis thaliana]

Protein Classification

ABA4-like family protein( domain architecture ID 83474)

ABA4-like family protein is a DUF4281 domain-containing protein; similar to Arabidopsis thaliana chloroplastic abscisic acid (ABA)-deficient 4 protein (ABA4), which is required for neoxanthin biosynthesis, an intermediary step in abscisic acid (ABA) biosynthesis

Gene Ontology:  GO:0009688

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ABA4-like super family cl16621
ABA DEFICIENT 4-like; This family of proteins is found in bacteria and plants. It includes ...
 80-138 9.89e-15

ABA DEFICIENT 4-like; This family of proteins is found in bacteria and plants. It includes abscisic acid (ABA)-deficient 4 protein (ABA4) from Arabidopsis thaliana, which has a role in neoxanthin synthesis and may be important for the de novo ABA synthesis specifically during dehydration.


The actual alignment was detected with superfamily member pfam14108:

Pssm-ID: 433722  Cd Length: 127  Bit Score: 66.49  E-value: 9.89e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1063695880  80 SVFAVGTTAVLPFYTLMVVAPKAEITKKCMESSVPYIILGVLYVYLLYISWTPETLKYM 138
Cdd:pfam14108   1 LLFTLANLLVLPFWLLMILAPRWRVTRRIMESPLPFLPLALVYLYLWVAPLLGELAPAV 59
 
Name Accession Description Interval E-value
ABA4-like pfam14108
ABA DEFICIENT 4-like; This family of proteins is found in bacteria and plants. It includes ...
 80-138 9.89e-15

ABA DEFICIENT 4-like; This family of proteins is found in bacteria and plants. It includes abscisic acid (ABA)-deficient 4 protein (ABA4) from Arabidopsis thaliana, which has a role in neoxanthin synthesis and may be important for the de novo ABA synthesis specifically during dehydration.


Pssm-ID: 433722  Cd Length: 127  Bit Score: 66.49  E-value: 9.89e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1063695880  80 SVFAVGTTAVLPFYTLMVVAPKAEITKKCMESSVPYIILGVLYVYLLYISWTPETLKYM 138
Cdd:pfam14108   1 LLFTLANLLVLPFWLLMILAPRWRVTRRIMESPLPFLPLALVYLYLWVAPLLGELAPAV 59
 
Name Accession Description Interval E-value
ABA4-like pfam14108
ABA DEFICIENT 4-like; This family of proteins is found in bacteria and plants. It includes ...
 80-138 9.89e-15

ABA DEFICIENT 4-like; This family of proteins is found in bacteria and plants. It includes abscisic acid (ABA)-deficient 4 protein (ABA4) from Arabidopsis thaliana, which has a role in neoxanthin synthesis and may be important for the de novo ABA synthesis specifically during dehydration.


Pssm-ID: 433722  Cd Length: 127  Bit Score: 66.49  E-value: 9.89e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1063695880  80 SVFAVGTTAVLPFYTLMVVAPKAEITKKCMESSVPYIILGVLYVYLLYISWTPETLKYM 138
Cdd:pfam14108   1 LLFTLANLLVLPFWLLMILAPRWRVTRRIMESPLPFLPLALVYLYLWVAPLLGELAPAV 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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