NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1063708344|ref|NP_001319800|]
View 

Far-red impaired responsive (FAR1) family protein [Arabidopsis thaliana]

Protein Classification

FHY3/FAR1 family protein( domain architecture ID 13288755)

FHY3/FAR1 family protein similar to FAR-RED ELONGATED HYPOCOTYL 3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) which are transcription factors that play multiple roles in a wide range of cellular processes and are crucial for plant growth and development, and to transposases of the Mutator-like element (MULE)

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 97-184 1.45e-44

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


:

Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 145.17  E-value: 1.45e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708344  97 FYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSKRDK-VIRQRAETRVGCKAMILIRKENSGKWVITKFV 175
Cdd:pfam03101   2 FYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKQRTGeARRPRPSTRTGCKAMIVVKRESDGKWVVTQFV 81


                  ....*....
gi 1063708344 176 KEHNHSLMP 184
Cdd:pfam03101  82 KEHNHELLP 90
FHY3 super family cl31971
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 19-230 8.83e-19

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


The actual alignment was detected with superfamily member PLN03097:

Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 85.43  E-value: 8.83e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708344  19 VELEVTTVENHNEMGESSGQAMIEQDDDNHNELGE-----NSGEQ---DEKVDLDSIPLAVADMTEAQGDEPYVGQEFES 90
Cdd:PLN03097    3 IDLRLPSGDHDKEDEEPNGVDNMLSEVKLHNGDMEignvvDVAEEvlsIDGGDMNSPTGELVEFKEDTNLEPLSGMEFES 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708344  91 EAAAHGFYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEG--------YRLPSKR------DKVIRQRAETRVGCK 156
Cdd:PLN03097   83 HGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGtkreydksFNRPRARqtkqdpENGTGRRSCAKTDCK 162

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1063708344 157 AMILIRKENSGKWVITKFVKEHNHSLMPGRVrrgciydqYPNEHDKIQELMQQLAAEKKRAATYKRHLEMLFEQ 230
Cdd:PLN03097  163 ASMHVKRRPDGKWVIHSFVKEHNHELLPAQA--------VSEQTRKMYAAMARQFAEYKNVVGLKNDSKSSFDK 228
 
Name Accession Description Interval E-value
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 97-184 1.45e-44

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 145.17  E-value: 1.45e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708344  97 FYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSKRDK-VIRQRAETRVGCKAMILIRKENSGKWVITKFV 175
Cdd:pfam03101   2 FYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKQRTGeARRPRPSTRTGCKAMIVVKRESDGKWVVTQFV 81


                  ....*....
gi 1063708344 176 KEHNHSLMP 184
Cdd:pfam03101  82 KEHNHELLP 90
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 19-230 8.83e-19

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 85.43  E-value: 8.83e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708344  19 VELEVTTVENHNEMGESSGQAMIEQDDDNHNELGE-----NSGEQ---DEKVDLDSIPLAVADMTEAQGDEPYVGQEFES 90
Cdd:PLN03097    3 IDLRLPSGDHDKEDEEPNGVDNMLSEVKLHNGDMEignvvDVAEEvlsIDGGDMNSPTGELVEFKEDTNLEPLSGMEFES 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708344  91 EAAAHGFYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEG--------YRLPSKR------DKVIRQRAETRVGCK 156
Cdd:PLN03097   83 HGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGtkreydksFNRPRARqtkqdpENGTGRRSCAKTDCK 162

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1063708344 157 AMILIRKENSGKWVITKFVKEHNHSLMPGRVrrgciydqYPNEHDKIQELMQQLAAEKKRAATYKRHLEMLFEQ 230
Cdd:PLN03097  163 ASMHVKRRPDGKWVIHSFVKEHNHELLPAQA--------VSEQTRKMYAAMARQFAEYKNVVGLKNDSKSSFDK 228
 
Name Accession Description Interval E-value
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 97-184 1.45e-44

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 145.17  E-value: 1.45e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708344  97 FYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSKRDK-VIRQRAETRVGCKAMILIRKENSGKWVITKFV 175
Cdd:pfam03101   2 FYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKQRTGeARRPRPSTRTGCKAMIVVKRESDGKWVVTQFV 81


                  ....*....
gi 1063708344 176 KEHNHSLMP 184
Cdd:pfam03101  82 KEHNHELLP 90
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 19-230 8.83e-19

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 85.43  E-value: 8.83e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708344  19 VELEVTTVENHNEMGESSGQAMIEQDDDNHNELGE-----NSGEQ---DEKVDLDSIPLAVADMTEAQGDEPYVGQEFES 90
Cdd:PLN03097    3 IDLRLPSGDHDKEDEEPNGVDNMLSEVKLHNGDMEignvvDVAEEvlsIDGGDMNSPTGELVEFKEDTNLEPLSGMEFES 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063708344  91 EAAAHGFYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEG--------YRLPSKR------DKVIRQRAETRVGCK 156
Cdd:PLN03097   83 HGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGtkreydksFNRPRARqtkqdpENGTGRRSCAKTDCK 162

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1063708344 157 AMILIRKENSGKWVITKFVKEHNHSLMPGRVrrgciydqYPNEHDKIQELMQQLAAEKKRAATYKRHLEMLFEQ 230
Cdd:PLN03097  163 ASMHVKRRPDGKWVIHSFVKEHNHELLPAQA--------VSEQTRKMYAAMARQFAEYKNVVGLKNDSKSSFDK 228
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH