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Conserved domains on  [gi|1063742240|ref|NP_001318842|]
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DNA-binding protein [Arabidopsis thaliana]

Protein Classification

Jas domain-containing protein( domain architecture ID 11241127)

Jas domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TDBD pfam16135
Tify domain binding domain; This entry contains a C-terminal presumed zinc binding domain from ...
 320-375 1.56e-14

Tify domain binding domain; This entry contains a C-terminal presumed zinc binding domain from the NINJA protein which interacts with the Tify domain of JAZ1.


:

Pssm-ID: 465033  Cd Length: 52  Bit Score: 67.34  E-value: 1.56e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1063742240 320 GVIKGSGYLCGCqtCDftKVLNAYAFERHAGCKTKHPNNHIYFENGKTIYQIVQEL 375
Cdd:pfam16135   1 GVITRDGILCSC--CG--KVFSPSEFEAHAGSKNRRPSANIFLESGRSLLECLKEL 52
 
Name Accession Description Interval E-value
TDBD pfam16135
Tify domain binding domain; This entry contains a C-terminal presumed zinc binding domain from ...
 320-375 1.56e-14

Tify domain binding domain; This entry contains a C-terminal presumed zinc binding domain from the NINJA protein which interacts with the Tify domain of JAZ1.


Pssm-ID: 465033  Cd Length: 52  Bit Score: 67.34  E-value: 1.56e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1063742240 320 GVIKGSGYLCGCqtCDftKVLNAYAFERHAGCKTKHPNNHIYFENGKTIYQIVQEL 375
Cdd:pfam16135   1 GVITRDGILCSC--CG--KVFSPSEFEAHAGSKNRRPSANIFLESGRSLLECLKEL 52
 
Name Accession Description Interval E-value
TDBD pfam16135
Tify domain binding domain; This entry contains a C-terminal presumed zinc binding domain from ...
 320-375 1.56e-14

Tify domain binding domain; This entry contains a C-terminal presumed zinc binding domain from the NINJA protein which interacts with the Tify domain of JAZ1.


Pssm-ID: 465033  Cd Length: 52  Bit Score: 67.34  E-value: 1.56e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1063742240 320 GVIKGSGYLCGCqtCDftKVLNAYAFERHAGCKTKHPNNHIYFENGKTIYQIVQEL 375
Cdd:pfam16135   1 GVITRDGILCSC--CG--KVFSPSEFEAHAGSKNRRPSANIFLESGRSLLECLKEL 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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