NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1061385207|ref|NP_001317884|]
View 

SOSS complex subunit A homolog [Caenorhabditis elegans]

Protein Classification

DUF4507 domain-containing protein( domain architecture ID 140565)

DUF4507 domain-containing protein similar to Homo sapiens protein C7orf26

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF4507 super family cl20845
Domain of unknown function (DUF4507); This family of proteins is found in eukaryotes. Proteins ...
 30-164 6.09e-07

Domain of unknown function (DUF4507); This family of proteins is found in eukaryotes. Proteins in this family are typically between 346 and 434 amino acids in length.


The actual alignment was detected with superfamily member pfam14964:

Pssm-ID: 464409  Cd Length: 359  Bit Score: 50.39  E-value: 6.09e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1061385207  30 RRTKMNAMQQLQLVRVLAQFFLERVDDGHRYSYFEAIFLGRSDDPTlheyRLSVMFQLVSFSIQYPVLQILNHVMGWLCQ 109
Cdd:pfam14964  60 RPKRLNAIQELQLLEILCDYFQEPGSDAVRNAVFLSLFGLQGTPAQ----RMKLLGKLVSLAISTQSVPVLNCAGIWMQQ 135

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1061385207 110 MKNveqERIYSDRLIDMII-EHFVRLSNEQnrmhEYLIPLEGTCSEFCALFVSRAT 164
Cdd:pfam14964 136 LGC---TSPYSLELARNIVdDYFSLVPSSV----ETLKQLPKISPHFTANFITAVT 184
 
Name Accession Description Interval E-value
DUF4507 pfam14964
Domain of unknown function (DUF4507); This family of proteins is found in eukaryotes. Proteins ...
 30-164 6.09e-07

Domain of unknown function (DUF4507); This family of proteins is found in eukaryotes. Proteins in this family are typically between 346 and 434 amino acids in length.


Pssm-ID: 464409  Cd Length: 359  Bit Score: 50.39  E-value: 6.09e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1061385207  30 RRTKMNAMQQLQLVRVLAQFFLERVDDGHRYSYFEAIFLGRSDDPTlheyRLSVMFQLVSFSIQYPVLQILNHVMGWLCQ 109
Cdd:pfam14964  60 RPKRLNAIQELQLLEILCDYFQEPGSDAVRNAVFLSLFGLQGTPAQ----RMKLLGKLVSLAISTQSVPVLNCAGIWMQQ 135

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1061385207 110 MKNveqERIYSDRLIDMII-EHFVRLSNEQnrmhEYLIPLEGTCSEFCALFVSRAT 164
Cdd:pfam14964 136 LGC---TSPYSLELARNIVdDYFSLVPSSV----ETLKQLPKISPHFTANFITAVT 184
 
Name Accession Description Interval E-value
DUF4507 pfam14964
Domain of unknown function (DUF4507); This family of proteins is found in eukaryotes. Proteins ...
 30-164 6.09e-07

Domain of unknown function (DUF4507); This family of proteins is found in eukaryotes. Proteins in this family are typically between 346 and 434 amino acids in length.


Pssm-ID: 464409  Cd Length: 359  Bit Score: 50.39  E-value: 6.09e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1061385207  30 RRTKMNAMQQLQLVRVLAQFFLERVDDGHRYSYFEAIFLGRSDDPTlheyRLSVMFQLVSFSIQYPVLQILNHVMGWLCQ 109
Cdd:pfam14964  60 RPKRLNAIQELQLLEILCDYFQEPGSDAVRNAVFLSLFGLQGTPAQ----RMKLLGKLVSLAISTQSVPVLNCAGIWMQQ 135

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1061385207 110 MKNveqERIYSDRLIDMII-EHFVRLSNEQnrmhEYLIPLEGTCSEFCALFVSRAT 164
Cdd:pfam14964 136 LGC---TSPYSLELARNIVdDYFSLVPSSV----ETLKQLPKISPHFTANFITAVT 184
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH