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Conserved domains on  [gi|1028630628|ref|NP_001313334|]
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CCHC-type zinc finger, nucleic acid binding protein b [Danio rerio]

Protein Classification

CCHC-type zinc finger protein( domain architecture ID 1000253)

CCHC-type zinc finger protein similar to human cellular nucleic acid-binding protein, a single-stranded DNA-binding protein that preferentially binds to the sterol regulatory element (SRE) sequence 5'-GTGCGGTG-3', and thereby mediates transcriptional repression

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00368 super family cl31762
universal minicircle sequence binding protein (UMSBP); Provisional
 38-155 9.03e-27

universal minicircle sequence binding protein (UMSBP); Provisional


The actual alignment was detected with superfamily member PTZ00368:

Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 98.34  E-value: 9.03e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1028630628  38 CYRCGEPGHVARDCERTEDA-------CYNCGRGGHISRDC-KEPKKEREQVCYNCGKAGHMARDCDHA----NEQKCYS 105
Cdd:PTZ00368    3 CYRCGGVGHQSRECPNSAPAgaakarpCYKCGEPGHLSRECpSAPGGRGERSCYNCGKTGHLSRECPEAppgsGPRSCYN 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1028630628 106 CGGFGHIQKGC--------EKVKCYRCGEIGHVAVQCSKAS-----EVNCYNCGKSGHVAKEC 155
Cdd:PTZ00368   83 CGQTGHISRECpnrakggaARRACYNCGGEGHISRDCPNAGkrpggDKTCYNCGQTGHLSRDC 145
COG5222 super family cl34947
Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];
6-20 1.40e-03

Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];


The actual alignment was detected with superfamily member COG5222:

Pssm-ID: 227547 [Multi-domain]  Cd Length: 427  Bit Score: 37.80  E-value: 1.40e-03
                          10
                  ....*....|....*
gi 1028630628   6 CFGCGRTGHWIKNCP 20
Cdd:COG5222   179 CYRCGQKGHWIQNCP 193
 
Name Accession Description Interval E-value
PTZ00368 PTZ00368
universal minicircle sequence binding protein (UMSBP); Provisional
 38-155 9.03e-27

universal minicircle sequence binding protein (UMSBP); Provisional


Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 98.34  E-value: 9.03e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1028630628  38 CYRCGEPGHVARDCERTEDA-------CYNCGRGGHISRDC-KEPKKEREQVCYNCGKAGHMARDCDHA----NEQKCYS 105
Cdd:PTZ00368    3 CYRCGGVGHQSRECPNSAPAgaakarpCYKCGEPGHLSRECpSAPGGRGERSCYNCGKTGHLSRECPEAppgsGPRSCYN 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1028630628 106 CGGFGHIQKGC--------EKVKCYRCGEIGHVAVQCSKAS-----EVNCYNCGKSGHVAKEC 155
Cdd:PTZ00368   83 CGQTGHISRECpnrakggaARRACYNCGGEGHISRDCPNAGkrpggDKTCYNCGQTGHLSRDC 145
AIR1 COG5082
Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational ...
 37-160 9.23e-18

Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion];


Pssm-ID: 227414 [Multi-domain]  Cd Length: 190  Bit Score: 76.04  E-value: 9.23e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1028630628  37 FCYRCGEPGHVARDCerTEDACYNCGRGGHISRDCKEPKKereqvCYNCGKAGHMARDCDHANEQK--CYSCGGFGHIQK 114
Cdd:COG5082    62 VCFNCGQNGHLRRDC--PHSICYNCSWDGHRSNHCPKPKK-----CYNCGETGHLSRDCNPSKDQQksCFDCNSTRHSSE 134

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1028630628 115 GCEKVKCYRCGEIGHVAVQcskasEVNCYNCGKSGHVAKECTIEAT 160
Cdd:COG5082   135 DCPSIWKHYVLNNGDGHPI-----KKFCYSCGSAGHFGDDCKEPRS 175
COG5222 COG5222
Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];
6-20 1.40e-03

Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];


Pssm-ID: 227547 [Multi-domain]  Cd Length: 427  Bit Score: 37.80  E-value: 1.40e-03
                          10
                  ....*....|....*
gi 1028630628   6 CFGCGRTGHWIKNCP 20
Cdd:COG5222   179 CYRCGQKGHWIQNCP 193
 
Name Accession Description Interval E-value
PTZ00368 PTZ00368
universal minicircle sequence binding protein (UMSBP); Provisional
 38-155 9.03e-27

universal minicircle sequence binding protein (UMSBP); Provisional


Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 98.34  E-value: 9.03e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1028630628  38 CYRCGEPGHVARDCERTEDA-------CYNCGRGGHISRDC-KEPKKEREQVCYNCGKAGHMARDCDHA----NEQKCYS 105
Cdd:PTZ00368    3 CYRCGGVGHQSRECPNSAPAgaakarpCYKCGEPGHLSRECpSAPGGRGERSCYNCGKTGHLSRECPEAppgsGPRSCYN 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1028630628 106 CGGFGHIQKGC--------EKVKCYRCGEIGHVAVQCSKAS-----EVNCYNCGKSGHVAKEC 155
Cdd:PTZ00368   83 CGQTGHISRECpnrakggaARRACYNCGGEGHISRDCPNAGkrpggDKTCYNCGQTGHLSRDC 145
PTZ00368 PTZ00368
universal minicircle sequence binding protein (UMSBP); Provisional
 1-116 8.12e-20

universal minicircle sequence binding protein (UMSBP); Provisional


Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 80.24  E-value: 8.12e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1028630628   1 MSSNECFGCGRTGHWIKNCPNAGRGRGkgrgrgkDLFCYRCGEPGHVARDCERTED-----ACYNCGRGGHISRDCKEPK 75
Cdd:PTZ00368   25 AKARPCYKCGEPGHLSRECPSAPGGRG-------ERSCYNCGKTGHLSRECPEAPPgsgprSCYNCGQTGHISRECPNRA 97

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1028630628  76 K--EREQVCYNCGKAGHMARDCDHAN-----EQKCYSCGGFGHIQKGC 116
Cdd:PTZ00368   98 KggAARRACYNCGGEGHISRDCPNAGkrpggDKTCYNCGQTGHLSRDC 145
AIR1 COG5082
Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational ...
 37-160 9.23e-18

Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion];


Pssm-ID: 227414 [Multi-domain]  Cd Length: 190  Bit Score: 76.04  E-value: 9.23e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1028630628  37 FCYRCGEPGHVARDCerTEDACYNCGRGGHISRDCKEPKKereqvCYNCGKAGHMARDCDHANEQK--CYSCGGFGHIQK 114
Cdd:COG5082    62 VCFNCGQNGHLRRDC--PHSICYNCSWDGHRSNHCPKPKK-----CYNCGETGHLSRDCNPSKDQQksCFDCNSTRHSSE 134

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1028630628 115 GCEKVKCYRCGEIGHVAVQcskasEVNCYNCGKSGHVAKECTIEAT 160
Cdd:COG5082   135 DCPSIWKHYVLNNGDGHPI-----KKFCYSCGSAGHFGDDCKEPRS 175
AIR1 COG5082
Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational ...
 1-151 1.07e-15

Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion];


Pssm-ID: 227414 [Multi-domain]  Cd Length: 190  Bit Score: 70.65  E-value: 1.07e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1028630628   1 MSSNECFGCGRTGHWIKNCPNAgrgrgkgrgrgkdlFCYRCGEPGHVARDCERTEdACYNCGRGGHISRDCkEPKKEREQ 80
Cdd:COG5082    58 EENPVCFNCGQNGHLRRDCPHS--------------ICYNCSWDGHRSNHCPKPK-KCYNCGETGHLSRDC-NPSKDQQK 121

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1028630628  81 VCYNCGKAGHMARDCDHANEQKCYSCGGFGHIqkgceKVKCYRCGEIGHVAVQCSKASEVNC-YNCGKSGHV 151
Cdd:COG5082   122 SCFDCNSTRHSSEDCPSIWKHYVLNNGDGHPI-----KKFCYSCGSAGHFGDDCKEPRSSRVpYVCGKKGYV 188
AIR1 COG5082
Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational ...
 67-155 6.59e-14

Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion];


Pssm-ID: 227414 [Multi-domain]  Cd Length: 190  Bit Score: 66.03  E-value: 6.59e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1028630628  67 ISRDCKEPKKEREQVCYNCGKAGHMARDCDHAneqKCYSCGGFGHIQKGC-EKVKCYRCGEIGHVAVQC--SKASEVNCY 143
Cdd:COG5082    48 RSVEDVSAIREENPVCFNCGQNGHLRRDCPHS---ICYNCSWDGHRSNHCpKPKKCYNCGETGHLSRDCnpSKDQQKSCF 124

                          90
                  ....*....|..
gi 1028630628 144 NCGKSGHVAKEC 155
Cdd:COG5082   125 DCNSTRHSSEDC 136
PTZ00368 PTZ00368
universal minicircle sequence binding protein (UMSBP); Provisional
 81-161 4.50e-11

universal minicircle sequence binding protein (UMSBP); Provisional


Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 57.51  E-value: 4.50e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1028630628  81 VCYNCGKAGHMARDCDH------ANEQKCYSCGGFGHIQKGCEKVK-------CYRCGEIGHVAVQC----SKASEVNCY 143
Cdd:PTZ00368    2 VCYRCGGVGHQSRECPNsapagaAKARPCYKCGEPGHLSRECPSAPggrgersCYNCGKTGHLSRECpeapPGSGPRSCY 81

                          90
                  ....*....|....*...
gi 1028630628 144 NCGKSGHVAKECTIEATA 161
Cdd:PTZ00368   82 NCGQTGHISRECPNRAKG 99
PTZ00368 PTZ00368
universal minicircle sequence binding protein (UMSBP); Provisional
 6-73 5.95e-10

universal minicircle sequence binding protein (UMSBP); Provisional


Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 54.43  E-value: 5.95e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1028630628   6 CFGCGRTGHWIKNCPNAGRGRGKGRGrgkdlfCYRCGEPGHVARDC------ERTEDACYNCGRGGHISRDCKE 73
Cdd:PTZ00368   80 CYNCGQTGHISRECPNRAKGGAARRA------CYNCGGEGHISRDCpnagkrPGGDKTCYNCGQTGHLSRDCPD 147
COG5222 COG5222
Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];
6-20 1.40e-03

Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];


Pssm-ID: 227547 [Multi-domain]  Cd Length: 427  Bit Score: 37.80  E-value: 1.40e-03
                          10
                  ....*....|....*
gi 1028630628   6 CFGCGRTGHWIKNCP 20
Cdd:COG5222   179 CYRCGQKGHWIQNCP 193
PRK14293 PRK14293
molecular chaperone DnaJ;
58-114 2.19e-03

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 37.28  E-value: 2.19e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1028630628  58 CYNCGRGGHISRDCKEPKKEREQV--CYNCGKAGHMArdcdhanEQKCYSCGGFGHIQK 114
Cdd:PRK14293  163 CSTCGGAGQVRRATRTPFGSFTQVseCPTCNGTGQVI-------EDPCDACGGQGVKQV 214
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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