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Conserved domains on  [gi|1003701401|ref|NP_001307831|]
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thymidylate kinase isoform 3 [Homo sapiens]

Protein Classification

nucleoside/nucleotide kinase family protein( domain architecture ID 106737)

nucleoside/nucleotide kinase family protein may catalyze the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
NK super family cl17190
Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of ...
2-168 5.17e-63

Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.


The actual alignment was detected with superfamily member PLN02924:

Pssm-ID: 450170  Cd Length: 220  Bit Score: 193.40  E-value: 5.17e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003701401   2 AARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHS-------------- 67
Cdd:PLN02924   12 VESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAihllfsanrwekrs 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003701401  68 ----------------------------NFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALR 119
Cdd:PLN02924   92 lmerklksgttlvvdrysysgvafsaakGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGGERYEKLEFQKKVAK 171
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1003701401 120 CFHQLMKDTtlnWKMVDASKSIEAVHEDIRVLSEDAIRTATE-KPLGELW 168
Cdd:PLN02924  172 RFQTLRDSS---WKIIDASQSIEEVEKKIREVVLDTVQRCLAgKPLSRLW 218
 
Name Accession Description Interval E-value
PLN02924 PLN02924
thymidylate kinase
2-168 5.17e-63

thymidylate kinase


Pssm-ID: 178512  Cd Length: 220  Bit Score: 193.40  E-value: 5.17e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003701401   2 AARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHS-------------- 67
Cdd:PLN02924   12 VESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAihllfsanrwekrs 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003701401  68 ----------------------------NFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALR 119
Cdd:PLN02924   92 lmerklksgttlvvdrysysgvafsaakGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGGERYEKLEFQKKVAK 171
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1003701401 120 CFHQLMKDTtlnWKMVDASKSIEAVHEDIRVLSEDAIRTATE-KPLGELW 168
Cdd:PLN02924  172 RFQTLRDSS---WKIIDASQSIEEVEKKIREVVLDTVQRCLAgKPLSRLW 218
Thymidylate_kin pfam02223
Thymidylate kinase;
11-148 1.03e-33

Thymidylate kinase;


Pssm-ID: 396690  Cd Length: 184  Bit Score: 117.40  E-value: 1.03e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003701401  11 LEGVDRAGKSTQSRKLVEALCAAGHRaELLRFPERSTEIGKLLSSYLQKKSDVEDHS----------------------- 67
Cdd:pfam02223   1 IEGLDGAGKTTQAELLKERLKEQGIK-VVFTREPGGTPIGEKIRELLLRNEELSPLTeallfaadriqhleqkikpalkq 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003701401  68 ----------------------NFSLDWCKQPDVGlPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLM 125
Cdd:pfam02223  80 gktvivdrylfsgiayqgakggDLDLVLSLNPDVP-GKPDLTFLLDVDPEVALKRLRRRGELEKTEFEQLDFLRKVRERY 158
                         170       180
                  ....*....|....*....|....*.
gi 1003701401 126 KD---TTLNWKMVDASKSIEAVHEDI 148
Cdd:pfam02223 159 LElakFDERIKIIDASLSIEEVHEEI 184
Tmk COG0125
Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the ...
5-149 1.61e-25

Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the Pathway/BioSystem: Thymidylate biosynthesis


Pssm-ID: 439895 [Multi-domain]  Cd Length: 206  Bit Score: 96.76  E-value: 1.61e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003701401   5 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPeRSTEIGKLLSSYLQKKSDVED------------------- 65
Cdd:COG0125     2 KGKFIVFEGIDGSGKSTQIKLLAEYLEARGYDVVLTREP-GGTPLGEAIRELLLGDNEDMSprtelllfaadraqhveev 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003701401  66 -----------------HSNF---------SLDWCKQ---PDVGLPKPDLVLFLQLQLADAAKR---GAFGHERYENG-- 111
Cdd:COG0125    81 irpalaagkivicdryvDSSLayqgggrglDLEWIRQlnrFATGGLKPDLTILLDVPPEVALARaraRGGELDRFESEdl 160
                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1003701401 112 AFQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIR 149
Cdd:COG0125   161 EFHERVREGYLELAAKEPERIVVIDASQSIEEVHAEIR 198
DTMP_kinase TIGR00041
dTMP kinase; Function: phosphorylation of DTMP to form DTDP in both de novo and salvage ...
5-148 2.70e-18

dTMP kinase; Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate. [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]


Pssm-ID: 161676  Cd Length: 195  Bit Score: 77.79  E-value: 2.70e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003701401   5 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAeLLRFPERSTEIGKLLSSYL--------------------------- 57
Cdd:TIGR00041   2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDV-LFTREPGGTPIGEKIRELLlnendepltdkaeallfaadrhehled 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003701401  58 -------QKKSDVEDHSNFS--------------LDWCKQPDVGLPKPDLVLFLQLQ----LADAAKRGAFGHERYENGA 112
Cdd:TIGR00041  81 kikpalaEGKLVISDRYVFSsiayqggargidedLVLELNEDALGDMPDLTIYLDIDpevaLERLRKRGELDREEFEKLD 160
                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1003701401 113 FQERALRCFHQLMKDTTlNWKMVDASKSIEAVHEDI 148
Cdd:TIGR00041 161 FFEKVRQRYLELADKEK-SIHVIDATNSVEEVEQDI 195
TMPK cd01672
Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the ...
8-149 6.84e-15

Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).


Pssm-ID: 238835  Cd Length: 200  Bit Score: 68.83  E-value: 6.84e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003701401   8 LIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPeRSTEIGKLLSSYLqkksdvEDHSNFSLDW-------------- 73
Cdd:cd01672     2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREP-GGTPIGEAIRELL------LDPEDEKMDPraelllfaadraqh 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003701401  74 --------CKQPDV---------------------------------GLPKPDLVLFL----QLQLADAAKRGAFGHERY 108
Cdd:cd01672    75 veevikpaLARGKIvlsdrfvdsslayqgagrglgealiealndlatGGLKPDLTILLdidpEVGLARIEARGRDDRDEQ 154
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1003701401 109 ENGAFQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIR 149
Cdd:cd01672   155 EGLEFHERVREGYLELAAQEPERIIVIDASQPLEEVLAEIL 195
 
Name Accession Description Interval E-value
PLN02924 PLN02924
thymidylate kinase
2-168 5.17e-63

thymidylate kinase


Pssm-ID: 178512  Cd Length: 220  Bit Score: 193.40  E-value: 5.17e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003701401   2 AARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHS-------------- 67
Cdd:PLN02924   12 VESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAihllfsanrwekrs 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003701401  68 ----------------------------NFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALR 119
Cdd:PLN02924   92 lmerklksgttlvvdrysysgvafsaakGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGGERYEKLEFQKKVAK 171
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1003701401 120 CFHQLMKDTtlnWKMVDASKSIEAVHEDIRVLSEDAIRTATE-KPLGELW 168
Cdd:PLN02924  172 RFQTLRDSS---WKIIDASQSIEEVEKKIREVVLDTVQRCLAgKPLSRLW 218
Thymidylate_kin pfam02223
Thymidylate kinase;
11-148 1.03e-33

Thymidylate kinase;


Pssm-ID: 396690  Cd Length: 184  Bit Score: 117.40  E-value: 1.03e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003701401  11 LEGVDRAGKSTQSRKLVEALCAAGHRaELLRFPERSTEIGKLLSSYLQKKSDVEDHS----------------------- 67
Cdd:pfam02223   1 IEGLDGAGKTTQAELLKERLKEQGIK-VVFTREPGGTPIGEKIRELLLRNEELSPLTeallfaadriqhleqkikpalkq 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003701401  68 ----------------------NFSLDWCKQPDVGlPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLM 125
Cdd:pfam02223  80 gktvivdrylfsgiayqgakggDLDLVLSLNPDVP-GKPDLTFLLDVDPEVALKRLRRRGELEKTEFEQLDFLRKVRERY 158
                         170       180
                  ....*....|....*....|....*.
gi 1003701401 126 KD---TTLNWKMVDASKSIEAVHEDI 148
Cdd:pfam02223 159 LElakFDERIKIIDASLSIEEVHEEI 184
Tmk COG0125
Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the ...
5-149 1.61e-25

Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the Pathway/BioSystem: Thymidylate biosynthesis


Pssm-ID: 439895 [Multi-domain]  Cd Length: 206  Bit Score: 96.76  E-value: 1.61e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003701401   5 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPeRSTEIGKLLSSYLQKKSDVED------------------- 65
Cdd:COG0125     2 KGKFIVFEGIDGSGKSTQIKLLAEYLEARGYDVVLTREP-GGTPLGEAIRELLLGDNEDMSprtelllfaadraqhveev 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003701401  66 -----------------HSNF---------SLDWCKQ---PDVGLPKPDLVLFLQLQLADAAKR---GAFGHERYENG-- 111
Cdd:COG0125    81 irpalaagkivicdryvDSSLayqgggrglDLEWIRQlnrFATGGLKPDLTILLDVPPEVALARaraRGGELDRFESEdl 160
                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1003701401 112 AFQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIR 149
Cdd:COG0125   161 EFHERVREGYLELAAKEPERIVVIDASQSIEEVHAEIR 198
DTMP_kinase TIGR00041
dTMP kinase; Function: phosphorylation of DTMP to form DTDP in both de novo and salvage ...
5-148 2.70e-18

dTMP kinase; Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate. [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]


Pssm-ID: 161676  Cd Length: 195  Bit Score: 77.79  E-value: 2.70e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003701401   5 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAeLLRFPERSTEIGKLLSSYL--------------------------- 57
Cdd:TIGR00041   2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDV-LFTREPGGTPIGEKIRELLlnendepltdkaeallfaadrhehled 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003701401  58 -------QKKSDVEDHSNFS--------------LDWCKQPDVGLPKPDLVLFLQLQ----LADAAKRGAFGHERYENGA 112
Cdd:TIGR00041  81 kikpalaEGKLVISDRYVFSsiayqggargidedLVLELNEDALGDMPDLTIYLDIDpevaLERLRKRGELDREEFEKLD 160
                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1003701401 113 FQERALRCFHQLMKDTTlNWKMVDASKSIEAVHEDI 148
Cdd:TIGR00041 161 FFEKVRQRYLELADKEK-SIHVIDATNSVEEVEQDI 195
TMPK cd01672
Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the ...
8-149 6.84e-15

Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).


Pssm-ID: 238835  Cd Length: 200  Bit Score: 68.83  E-value: 6.84e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003701401   8 LIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPeRSTEIGKLLSSYLqkksdvEDHSNFSLDW-------------- 73
Cdd:cd01672     2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREP-GGTPIGEAIRELL------LDPEDEKMDPraelllfaadraqh 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003701401  74 --------CKQPDV---------------------------------GLPKPDLVLFL----QLQLADAAKRGAFGHERY 108
Cdd:cd01672    75 veevikpaLARGKIvlsdrfvdsslayqgagrglgealiealndlatGGLKPDLTILLdidpEVGLARIEARGRDDRDEQ 154
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1003701401 109 ENGAFQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIR 149
Cdd:cd01672   155 EGLEFHERVREGYLELAAQEPERIIVIDASQPLEEVLAEIL 195
PRK07933 PRK07933
dTMP kinase;
8-43 6.93e-05

dTMP kinase;


Pssm-ID: 236133  Cd Length: 213  Bit Score: 41.50  E-value: 6.93e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1003701401   8 LIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFP 43
Cdd:PRK07933    2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFP 37
PRK06761 PRK06761
hypothetical protein; Provisional
8-39 5.44e-03

hypothetical protein; Provisional


Pssm-ID: 180682  Cd Length: 282  Bit Score: 36.27  E-value: 5.44e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1003701401   8 LIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL 39
Cdd:PRK06761    5 LIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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