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Conserved domains on  [gi|943463103|ref|NP_001303732|]
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Neur_chan_memb domain-containing protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Neur_chan_memb super family cl47784
Neurotransmitter-gated ion-channel transmembrane region; This family includes the four ...
 9-54 6.60e-03

Neurotransmitter-gated ion-channel transmembrane region; This family includes the four transmembrane helices that form the ion channel.


The actual alignment was detected with superfamily member pfam02932:

Pssm-ID: 460753 [Multi-domain]  Cd Length: 232  Bit Score: 33.40  E-value: 6.60e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 943463103    9 LSSVQSIRQDLTSQEHLKRIRKEWQMLARMLEKIIMWIFIISTVAF 54
Cdd:pfam02932 182 VEGVNFIAKHLRSQDEYISVKEDWKYVAMVIDRLSRWIFPIAFVLG 227
 
Name Accession Description Interval E-value
Neur_chan_memb pfam02932
Neurotransmitter-gated ion-channel transmembrane region; This family includes the four ...
 9-54 6.60e-03

Neurotransmitter-gated ion-channel transmembrane region; This family includes the four transmembrane helices that form the ion channel.


Pssm-ID: 460753 [Multi-domain]  Cd Length: 232  Bit Score: 33.40  E-value: 6.60e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 943463103    9 LSSVQSIRQDLTSQEHLKRIRKEWQMLARMLEKIIMWIFIISTVAF 54
Cdd:pfam02932 182 VEGVNFIAKHLRSQDEYISVKEDWKYVAMVIDRLSRWIFPIAFVLG 227
 
Name Accession Description Interval E-value
Neur_chan_memb pfam02932
Neurotransmitter-gated ion-channel transmembrane region; This family includes the four ...
 9-54 6.60e-03

Neurotransmitter-gated ion-channel transmembrane region; This family includes the four transmembrane helices that form the ion channel.


Pssm-ID: 460753 [Multi-domain]  Cd Length: 232  Bit Score: 33.40  E-value: 6.60e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 943463103    9 LSSVQSIRQDLTSQEHLKRIRKEWQMLARMLEKIIMWIFIISTVAF 54
Cdd:pfam02932 182 VEGVNFIAKHLRSQDEYISVKEDWKYVAMVIDRLSRWIFPIAFVLG 227
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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