|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13596 |
PRK13596 |
NADH-quinone oxidoreductase subunit NuoF; |
50-474 |
0e+00 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 237441 Cd Length: 433 Bit Score: 880.46 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 50 LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFPSGMKWSFMNKPGDGRPKYLV 129
Cdd:PRK13596 2 LKDKDRIFTNLYGLQDWSLKGAKKRGDWDGTKAILDKGRDWIIEEMKASGLRGRGGAGFPTGLKWSFMPKESDGRPHYLV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 130 VNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFD 209
Cdd:PRK13596 82 VNADESEPGTCKDRDILRHDPHKLIEGCLIASFAMGAHAAYIYIRGEFIREREALQAAIDEAYEAGLIGKNACGSGWDFD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 210 VFMHRGAGAYICGEETALIESLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGVWFASFGRTRNSGTK 289
Cdd:PRK13596 162 IYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAAWFASIGRPNNTGTK 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 290 LFNISGHVNRPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDDVIMDFDGLIAAQTSLGTAAI 369
Cdd:PRK13596 242 LFCISGHVNKPCNVEEAMGIPFRELIEKHAGGVRGGWDNLLAVIPGGSSVPLIPAEQCEDAIMDFDSLRAVGSGLGTAAV 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 370 IVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNKIMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWP 449
Cdd:PRK13596 322 IVMDKSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWRVMERMVKGRAQKREIDMLLDVTKQIEGHTICALGDAAAWP 401
|
410 420
....*....|....*....|....*.
gi 665404526 450 VQGLIRHFRPEIEKRM-QLHAKRVSN 474
Cdd:PRK13596 402 IQGLIRHFRPEIEERIdQYTANAHSD 427
|
|
| nuoF_fam |
TIGR01959 |
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ... |
55-464 |
0e+00 |
|
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]
Pssm-ID: 131014 Cd Length: 411 Bit Score: 686.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 55 RIFTNLYGRHDWRLKGALKRGDWYKTKEIVLK-GADWIVNEIKTSGLRGRGGAGFPSGMKWSFMNKPGDGRPKYLVVNAD 133
Cdd:TIGR01959 1 VLTTNLDNPESWTLEEYEKRGGYDALRKALEEmSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDDSPKPKYLVCNAD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 134 EGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMH 213
Cdd:TIGR01959 81 ESEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFVH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 214 RGAGAYICGEETALIESLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGVWFASFGRTRNSGTKLFNI 293
Cdd:TIGR01959 161 RGAGAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFSV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 294 SGHVNRPCTVEEEMSIPLKELIERHCGGVTGGWdNLLGVIPGGSSTPIIPKNVCDDVIMDFDGLIAAQTSLGTAAIIVMD 373
Cdd:TIGR01959 241 SGHVNKPGNYELPLGTPLRELLEDYAGGMRGGW-KLKAVIPGGSSTPVLPAEQHLDAPMDYDSLAAAGSMLGTGAVIVMD 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 374 KSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNKIMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGL 453
Cdd:TIGR01959 320 ESTCMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIEGKTICALGDAAAWPVQSA 399
|
410
....*....|.
gi 665404526 454 IRHFRPEIEKR 464
Cdd:TIGR01959 400 IKHFRDEFEAH 410
|
|
| NuoF |
COG1894 |
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ... |
56-469 |
0e+00 |
|
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 441498 [Multi-domain] Cd Length: 418 Bit Score: 665.56 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 56 IFTNLYGRHDWRLKGALKRGDWYKTKEIVLK-GADWIVNEIKTSGLRGRGGAGFPSGMKWSFMNKpGDGRPKYLVVNADE 134
Cdd:COG1894 7 LLRNCGIIDPESLEDYIARGGYQALRKALTEmTPEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPK-APGDPKYLVCNADE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 135 GEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHR 214
Cdd:COG1894 86 GEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLAIERLEKAIEEAREAGLLGKNILGSGFDFDIEVHR 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 215 GAGAYICGEETALIESLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGVWFASFGRTRNSGTKLFNIS 294
Cdd:COG1894 166 GAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKSKGTKLFSLS 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 295 GHVNRPCTVEEEMSIPLKELIERHCGGVTGGwDNLLGVIPGGSSTPIIPKNvCDDVIMDFDGLIAAQTSLGTAAIIVMDK 374
Cdd:COG1894 246 GHVKNPGLYEVPMGTTLRELIYDIGGGIRGG-RKLKAVQPGGPSGGCLPAE-HLDTPMDYESLAAAGSMLGSGGMIVMDE 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 375 STDVIKAIARLISFYKHESCGQCTPCREGIGWMNKIMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLI 454
Cdd:COG1894 324 TTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIKGTSLCALGDAAPNPVLSTL 403
|
410
....*....|....*
gi 665404526 455 RHFRPEIEKRMQLHA 469
Cdd:COG1894 404 KYFRDEFEAHIKDKR 418
|
|
| Complex1_51K |
pfam01512 |
Respiratory-chain NADH dehydrogenase 51 Kd subunit; |
95-264 |
2.63e-62 |
|
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
Pssm-ID: 460237 [Multi-domain] Cd Length: 150 Bit Score: 199.28 E-value: 2.63e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 95 IKTSGLRGRGGAGFPSGMKWSFmnkPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIR 174
Cdd:pfam01512 1 VKEAGIVGRGGAGFPTHVKLSP---PPKKKIKYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 175 GEFYNEASNMQLAIAEAYQAGligknacgtgydFDVFMHRGAGAYICGEETALIESLEGKqGKPRLKPpfPADVGVfgcp 254
Cdd:pfam01512 78 DEKPEAIAALEKAIAEARAAG------------FDIEVHRGAGAYPCGEEKALIYSLTGR-GVPRGKP--PADVGV---- 138
|
170
....*....|
gi 665404526 255 tTVTNVETVA 264
Cdd:pfam01512 139 -VVNNVETLA 147
|
|
| NADH_4Fe-4S |
smart00928 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
379-424 |
6.09e-19 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 197996 [Multi-domain] Cd Length: 46 Bit Score: 79.88 E-value: 6.09e-19
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 665404526 379 IKAIARLISFYKHESCGQCTPCREGIGWMNKIMTRFVKGDAQPAEI 424
Cdd:smart00928 1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13596 |
PRK13596 |
NADH-quinone oxidoreductase subunit NuoF; |
50-474 |
0e+00 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 237441 Cd Length: 433 Bit Score: 880.46 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 50 LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFPSGMKWSFMNKPGDGRPKYLV 129
Cdd:PRK13596 2 LKDKDRIFTNLYGLQDWSLKGAKKRGDWDGTKAILDKGRDWIIEEMKASGLRGRGGAGFPTGLKWSFMPKESDGRPHYLV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 130 VNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFD 209
Cdd:PRK13596 82 VNADESEPGTCKDRDILRHDPHKLIEGCLIASFAMGAHAAYIYIRGEFIREREALQAAIDEAYEAGLIGKNACGSGWDFD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 210 VFMHRGAGAYICGEETALIESLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGVWFASFGRTRNSGTK 289
Cdd:PRK13596 162 IYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAAWFASIGRPNNTGTK 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 290 LFNISGHVNRPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDDVIMDFDGLIAAQTSLGTAAI 369
Cdd:PRK13596 242 LFCISGHVNKPCNVEEAMGIPFRELIEKHAGGVRGGWDNLLAVIPGGSSVPLIPAEQCEDAIMDFDSLRAVGSGLGTAAV 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 370 IVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNKIMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWP 449
Cdd:PRK13596 322 IVMDKSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWRVMERMVKGRAQKREIDMLLDVTKQIEGHTICALGDAAAWP 401
|
410 420
....*....|....*....|....*.
gi 665404526 450 VQGLIRHFRPEIEKRM-QLHAKRVSN 474
Cdd:PRK13596 402 IQGLIRHFRPEIEERIdQYTANAHSD 427
|
|
| PTZ00304 |
PTZ00304 |
NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional |
47-466 |
0e+00 |
|
NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional
Pssm-ID: 185547 [Multi-domain] Cd Length: 461 Bit Score: 845.99 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 47 FGPLADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFPSGMKWSFMNK-PGDGRP 125
Cdd:PTZ00304 19 HGGLKDQDRIFTNLYRDFDTYIDGALKRGDWYRTKDILLKGHDWIIDEIKKSGLRGRGGAGFPSGLKWSFMPKvKPDGRP 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 126 KYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTG 205
Cdd:PTZ00304 99 SYLVVNADESEPGTCKDREIMRHDPHKLVEGALLAGFAMRARAAYIYIRGEFYNEARALQQAIDEAYKKGFLGKNACGSG 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 206 YDFDVFMHRGAGAYICGEETALIESLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGVWFASFGRTRN 285
Cdd:PTZ00304 179 YDFDVYVHRGAGAYICGEETALIESIEGKPGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPQWFASFGRPNN 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 286 SGTKLFNISGHVNRPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDDVIMDFDGLIAAQTSLG 365
Cdd:PTZ00304 259 AGTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLCVIPGGSSVPLIPKEICDNVLMDFDALKEVQSGLG 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 366 TAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNKIMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDG 445
Cdd:PTZ00304 339 TAAVIVMDKSTDIIDAILRLSKFYKHESCGQCTPCREGTPWLVKMMERFVVGNADKEEIDTLEEVSKQIEGHTICALGDA 418
|
410 420
....*....|....*....|.
gi 665404526 446 AAWPVQGLIRHFRPEIEKRMQ 466
Cdd:PTZ00304 419 AAWPVQGLIRHFRPEIEERIE 439
|
|
| PLN03132 |
PLN03132 |
NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional |
47-471 |
0e+00 |
|
NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Pssm-ID: 178678 [Multi-domain] Cd Length: 461 Bit Score: 814.49 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 47 FGPLADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFPSGMKWSFMNKPGDGRPK 126
Cdd:PLN03132 30 FGGLKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGPDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPS 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 127 YLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGY 206
Cdd:PLN03132 110 YLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRARAAYIYIRGEYVNERLNLERARHEAYAAGLLGKNACGSGY 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 207 DFDVFMHRGAGAYICGEETALIESLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGVWFASFGRTRNS 286
Cdd:PLN03132 190 DFDVYIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNA 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 287 GTKLFNISGHVNRPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDDVIMDFDGLIAAQTSLGT 366
Cdd:PLN03132 270 GTKLFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLLPKKICDDVLMDFDALKAVQSGLGT 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 367 AAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNKIMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGA 446
Cdd:PLN03132 350 AAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWDIMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAA 429
|
410 420
....*....|....*....|....*
gi 665404526 447 AWPVQGLIRHFRPEIEKRMQLHAKR 471
Cdd:PLN03132 430 AWPVQGLIRHFRPELERRIKERAER 454
|
|
| nuoF_fam |
TIGR01959 |
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ... |
55-464 |
0e+00 |
|
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]
Pssm-ID: 131014 Cd Length: 411 Bit Score: 686.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 55 RIFTNLYGRHDWRLKGALKRGDWYKTKEIVLK-GADWIVNEIKTSGLRGRGGAGFPSGMKWSFMNKPGDGRPKYLVVNAD 133
Cdd:TIGR01959 1 VLTTNLDNPESWTLEEYEKRGGYDALRKALEEmSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDDSPKPKYLVCNAD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 134 EGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMH 213
Cdd:TIGR01959 81 ESEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFVH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 214 RGAGAYICGEETALIESLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGVWFASFGRTRNSGTKLFNI 293
Cdd:TIGR01959 161 RGAGAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFSV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 294 SGHVNRPCTVEEEMSIPLKELIERHCGGVTGGWdNLLGVIPGGSSTPIIPKNVCDDVIMDFDGLIAAQTSLGTAAIIVMD 373
Cdd:TIGR01959 241 SGHVNKPGNYELPLGTPLRELLEDYAGGMRGGW-KLKAVIPGGSSTPVLPAEQHLDAPMDYDSLAAAGSMLGTGAVIVMD 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 374 KSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNKIMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGL 453
Cdd:TIGR01959 320 ESTCMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIEGKTICALGDAAAWPVQSA 399
|
410
....*....|.
gi 665404526 454 IRHFRPEIEKR 464
Cdd:TIGR01959 400 IKHFRDEFEAH 410
|
|
| NuoF |
COG1894 |
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ... |
56-469 |
0e+00 |
|
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 441498 [Multi-domain] Cd Length: 418 Bit Score: 665.56 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 56 IFTNLYGRHDWRLKGALKRGDWYKTKEIVLK-GADWIVNEIKTSGLRGRGGAGFPSGMKWSFMNKpGDGRPKYLVVNADE 134
Cdd:COG1894 7 LLRNCGIIDPESLEDYIARGGYQALRKALTEmTPEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPK-APGDPKYLVCNADE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 135 GEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHR 214
Cdd:COG1894 86 GEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLAIERLEKAIEEAREAGLLGKNILGSGFDFDIEVHR 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 215 GAGAYICGEETALIESLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGVWFASFGRTRNSGTKLFNIS 294
Cdd:COG1894 166 GAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKSKGTKLFSLS 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 295 GHVNRPCTVEEEMSIPLKELIERHCGGVTGGwDNLLGVIPGGSSTPIIPKNvCDDVIMDFDGLIAAQTSLGTAAIIVMDK 374
Cdd:COG1894 246 GHVKNPGLYEVPMGTTLRELIYDIGGGIRGG-RKLKAVQPGGPSGGCLPAE-HLDTPMDYESLAAAGSMLGSGGMIVMDE 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 375 STDVIKAIARLISFYKHESCGQCTPCREGIGWMNKIMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLI 454
Cdd:COG1894 324 TTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIKGTSLCALGDAAPNPVLSTL 403
|
410
....*....|....*
gi 665404526 455 RHFRPEIEKRMQLHA 469
Cdd:COG1894 404 KYFRDEFEAHIKDKR 418
|
|
| PRK11278 |
PRK11278 |
NADH-quinone oxidoreductase subunit NuoF; |
78-462 |
4.94e-119 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 236891 [Multi-domain] Cd Length: 448 Bit Score: 356.04 E-value: 4.94e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 78 YKTKEIVLKG--ADWIVNEIKTSGLRGRGGAGFPSGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVE 155
Cdd:PRK11278 36 YEGARKALTGmsPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVE 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 156 GCLIAGRAMGAQAAYIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIESLEGKQ 235
Cdd:PRK11278 116 GMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRR 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 236 GKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGVWFASF--GRTRNSGTKLFNISGHVNRPCTVEEEMSIPLKE 313
Cdd:PRK11278 196 ANPRSKPPFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNIskGKSKDAGTKLMGFSGRVKNPGLWELPFGTTARE 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 314 LIERHCGGVTGGWdNLLGVIPGGSSTP-IIPKNVcdDVIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHE 392
Cdd:PRK11278 276 ILEDYAGGMRDGL-KFKAWQPGGAGTDfLTEAHL--DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEFFARE 352
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 665404526 393 SCGQCTPCREGIGWMNKIMTRFVKGDAQPAEIDMLWEISKQI-EGHTICALGDGAAWPVQGLIRHFRPEIE 462
Cdd:PRK11278 353 SCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLgPGKTFCAHAPGAVEPLQSAIKYFREEFE 423
|
|
| Complex1_51K |
pfam01512 |
Respiratory-chain NADH dehydrogenase 51 Kd subunit; |
95-264 |
2.63e-62 |
|
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
Pssm-ID: 460237 [Multi-domain] Cd Length: 150 Bit Score: 199.28 E-value: 2.63e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 95 IKTSGLRGRGGAGFPSGMKWSFmnkPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIR 174
Cdd:pfam01512 1 VKEAGIVGRGGAGFPTHVKLSP---PPKKKIKYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 175 GEFYNEASNMQLAIAEAYQAGligknacgtgydFDVFMHRGAGAYICGEETALIESLEGKqGKPRLKPpfPADVGVfgcp 254
Cdd:pfam01512 78 DEKPEAIAALEKAIAEARAAG------------FDIEVHRGAGAYPCGEEKALIYSLTGR-GVPRGKP--PADVGV---- 138
|
170
....*....|
gi 665404526 255 tTVTNVETVA 264
Cdd:pfam01512 139 -VVNNVETLA 147
|
|
| NADH_4Fe-4S |
pfam10589 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
380-464 |
6.05e-43 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 463160 [Multi-domain] Cd Length: 85 Bit Score: 146.47 E-value: 6.05e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 380 KAIARLISFYKHESCGQCTPCREGIGWMNKIMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRP 459
Cdd:pfam10589 1 DVARRFLEFYAHESCGKCTPCREGTKWLAEILERIVDGEGTEEDLDLLEELARTIKGRSLCGLGDGAANPVLSALRYFRD 80
|
....*
gi 665404526 460 EIEKR 464
Cdd:pfam10589 81 EFEAH 85
|
|
| NADH_4Fe-4S |
smart00928 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
379-424 |
6.09e-19 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 197996 [Multi-domain] Cd Length: 46 Bit Score: 79.88 E-value: 6.09e-19
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 665404526 379 IKAIARLISFYKHESCGQCTPCREGIGWMNKIMTRFVKGDAQPAEI 424
Cdd:smart00928 1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
|
|
| RnfC |
COG4656 |
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and ... |
91-336 |
3.38e-16 |
|
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase
Pssm-ID: 443694 [Multi-domain] Cd Length: 451 Bit Score: 80.57 E-value: 3.38e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 91 IVNEIKTSGLRGRGGAGFPSGMKwsfMNKPGDGRPKYLVVNADEGEPG-TCKDReIMRHDPHKLVEGCLIAGRAMGAQAA 169
Cdd:COG4656 124 IIERIREAGIVGLGGAGFPTHVK---LSPPPDKKIDTLIINGAECEPYlTCDDR-LMRERAEEIIEGIRILMKALGAKKV 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 170 YIYIRgefyneaSNMQLAIAEAyqagligKNACGTGYDFDVfmHRGAGAYICGEETALIESLEGKQ---GKprlkppFPA 246
Cdd:COG4656 200 IIGIE-------DNKPEAIAAL-------RKALAGDDDIEV--VVLPTKYPQGGEKQLIKALTGREvpsGG------LPA 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 247 DVGVFgcpttVTNVETV-AVA-------PTICRrggvwfasfgrtrnsgtkLFNISGH-VNRPCTVEEEMSIPLKELIEr 317
Cdd:COG4656 258 DVGVV-----VQNVGTAyAIYravrdgkPLIER------------------VVTVTGDaVKEPGNLLVRIGTPVSDLLE- 313
|
250
....*....|....*....
gi 665404526 318 HCGGVTggwDNLLGVIPGG 336
Cdd:COG4656 314 QAGGFK---EEPGKLIMGG 329
|
|
| rnfC |
TIGR01945 |
electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in ... |
91-336 |
1.03e-14 |
|
electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit. [Energy metabolism, Electron transport]
Pssm-ID: 273888 [Multi-domain] Cd Length: 435 Bit Score: 75.84 E-value: 1.03e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 91 IVNEIKTSGLRGRGGAGFPSGMKwsfMNKPGDGRPKYLVVNADEGEPG-TCKDReIMRHDPHKLVEGCLIAGRAMGAQAA 169
Cdd:TIGR01945 124 ILEKIRAAGIVGLGGATFPTHVK---LNPPPEKKIETLIINGAECEPYlTCDDR-LMRERAEEIIGGIRILLKILGVKKV 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 170 YIYIrgefynEASNMqlaiaEAYQAglIGKNACGTGYDFDVFMHRgagaYICGEETALIESLEGKQGKPRlkpPFPADVG 249
Cdd:TIGR01945 200 VIGI------EDNKP-----EAIAA--LKKALGGYNIKVRVLPTK----YPQGGEKQLIYALTGREVPSG---GLPADIG 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 250 VfgcptTVTNVETV-AVA-------PTICRrggvwfasfgrtrnsgtkLFNISGH-VNRPCTVEEEMSIPLKELIErHCG 320
Cdd:TIGR01945 260 V-----VVQNVGTAfAIYeavvngkPLIER------------------VVTVTGDaIRRPKNLWVLIGTPVSDILA-FCG 315
|
250
....*....|....*.
gi 665404526 321 GVTggwDNLLGVIPGG 336
Cdd:TIGR01945 316 GFR---EKPERLIMGG 328
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
91-271 |
3.90e-08 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 55.72 E-value: 3.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 91 IVNEIKTSGLRGRGGAGFPSGMKWSfmnkPGDGRPKYLVVNADEGEPG-TCKDReIMRHDPHKLVEGCLIAGRAMGAQAA 169
Cdd:PRK05035 130 LIERIRQAGIAGLGGAGFPTAVKLQ----PGGDKIETLIINGAECEPYiTADDR-LMRERADEIIEGIRILAHLLQPKEV 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404526 170 YIYIRGefyneasNMQLAIAeAYQAGLIGKNacgtGYDFDVFMHRgagaYICGEETALIESLEGKQ---GKprlkppFPA 246
Cdd:PRK05035 205 LIGIED-------NKPEAIA-ALRAALAGAD----DIRVRVIPTK----YPSGGEKQLIQILTGKEvpsGG------RPA 262
|
170 180
....*....|....*....|....*.
gi 665404526 247 DVGVFgcpttVTNVETV-AVAPTICR 271
Cdd:PRK05035 263 DIGVL-----MQNVGTAyAIKRAVID 283
|
|
| SLBB |
pfam10531 |
SLBB domain; |
293-341 |
1.03e-04 |
|
SLBB domain;
Pssm-ID: 463136 [Multi-domain] Cd Length: 56 Bit Score: 39.96 E-value: 1.03e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 665404526 293 ISGHVNRPCTVEEEMSIPLKELIErHCGGVTGGWDNLLGVI----PGGSSTPI 341
Cdd:pfam10531 4 VTGEVKRPGNYEVPIGTTLSDLIE-LAGGFTDDADLDINLRrlkrPGGPMMGI 55
|
|
| |
