NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|665404467|ref|NP_001285645|]
View 

uncharacterized protein Dmel_CG9029, isoform B [Drosophila melanogaster]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK09752 super family cl32407
AIDA-I family autotransporter YfaL;
30-70 1.23e-06

AIDA-I family autotransporter YfaL;


The actual alignment was detected with superfamily member PRK09752:

Pssm-ID: 182059 [Multi-domain]  Cd Length: 1250  Bit Score: 45.82  E-value: 1.23e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 665404467   30 SPLPEPIPDPSPVADPSPAANPSPVADPKPVAEPSANPGTG 70
Cdd:PRK09752  919 TPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVG 959
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
31-122 1.68e-04

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK14951:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 618  Bit Score: 39.70  E-value: 1.68e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404467  31 PLPEPIPDPSPVADPSPAANP---SPVADPKPVAEPSANPGTGTNAEPGPRSKPNPSPSAPATLLEANKQDNFAVPLLET 107
Cdd:PRK14951 387 AAPAAAPVAQAAAAPAPAAAPaaaASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRV 466

                         90
                 ....*....|....*
gi 665404467 108 APQKLDDVQADPQPA 122
Cdd:PRK14951 467 APEPAVASAAPAPAA 481
 
Name Accession Description Interval E-value
PRK09752 PRK09752
AIDA-I family autotransporter YfaL;
30-70 1.23e-06

AIDA-I family autotransporter YfaL;


Pssm-ID: 182059 [Multi-domain]  Cd Length: 1250  Bit Score: 45.82  E-value: 1.23e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 665404467   30 SPLPEPIPDPSPVADPSPAANPSPVADPKPVAEPSANPGTG 70
Cdd:PRK09752  919 TPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVG 959
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
 29-79 5.09e-06

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468203 [Multi-domain]  Cd Length: 871  Bit Score: 44.17  E-value: 5.09e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 665404467  29 GSPL-PEPIPDPSPvaDPSPAANPSPVADPKPVAEPsaNPGTGTNAEPGPRS 79
Cdd:NF033845 549 GPPVdPEPSPEPEP--EPTPDPEPSPDPDPEPSPDP--DPDSDSDSDSGSDS 596
Neisseria_TspB pfam05616
Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis ...
 35-103 9.50e-06

Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis TspB virulence factor proteins.


Pssm-ID: 283306 [Multi-domain]  Cd Length: 517  Bit Score: 43.16  E-value: 9.50e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 665404467   35 PIPDPSPVADPSPAANP----SPVADPKPVAEPSANPGTGTNAEPGPRSKPNPSPSAPATllEANKQDNFAVP 103
Cdd:pfam05616 326 PRPDLTPASAEAPHAQPlpevSPAENPANNPDPDENPGTRPNPEPDPDLNPDANPDTDGQ--PGTRPDSPAVP 396
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 31-122 1.68e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 39.70  E-value: 1.68e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404467  31 PLPEPIPDPSPVADPSPAANP---SPVADPKPVAEPSANPGTGTNAEPGPRSKPNPSPSAPATLLEANKQDNFAVPLLET 107
Cdd:PRK14951 387 AAPAAAPVAQAAAAPAPAAAPaaaASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRV 466

                         90
                 ....*....|....*
gi 665404467 108 APQKLDDVQADPQPA 122
Cdd:PRK14951 467 APEPAVASAAPAPAA 481
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
 31-79 6.96e-04

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468203 [Multi-domain]  Cd Length: 871  Bit Score: 38.01  E-value: 6.96e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 665404467  31 PLPEPIPDPspvaDPSPAANPSPVADPKPVAEPSANPGTGTNAEPGPRS 79
Cdd:NF033845 560 PEPEPTPDP----EPSPDPDPEPSPDPDPDSDSDSDSGSDSDSGSDSDS 604
 
Name Accession Description Interval E-value
PRK09752 PRK09752
AIDA-I family autotransporter YfaL;
30-70 1.23e-06

AIDA-I family autotransporter YfaL;


Pssm-ID: 182059 [Multi-domain]  Cd Length: 1250  Bit Score: 45.82  E-value: 1.23e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 665404467   30 SPLPEPIPDPSPVADPSPAANPSPVADPKPVAEPSANPGTG 70
Cdd:PRK09752  919 TPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVG 959
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
 29-79 5.09e-06

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468203 [Multi-domain]  Cd Length: 871  Bit Score: 44.17  E-value: 5.09e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 665404467  29 GSPL-PEPIPDPSPvaDPSPAANPSPVADPKPVAEPsaNPGTGTNAEPGPRS 79
Cdd:NF033845 549 GPPVdPEPSPEPEP--EPTPDPEPSPDPDPEPSPDP--DPDSDSDSDSGSDS 596
Neisseria_TspB pfam05616
Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis ...
 35-103 9.50e-06

Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis TspB virulence factor proteins.


Pssm-ID: 283306 [Multi-domain]  Cd Length: 517  Bit Score: 43.16  E-value: 9.50e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 665404467   35 PIPDPSPVADPSPAANP----SPVADPKPVAEPSANPGTGTNAEPGPRSKPNPSPSAPATllEANKQDNFAVP 103
Cdd:pfam05616 326 PRPDLTPASAEAPHAQPlpevSPAENPANNPDPDENPGTRPNPEPDPDLNPDANPDTDGQ--PGTRPDSPAVP 396
Neisseria_TspB pfam05616
Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis ...
 31-98 1.06e-05

Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis TspB virulence factor proteins.


Pssm-ID: 283306 [Multi-domain]  Cd Length: 517  Bit Score: 43.16  E-value: 1.06e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 665404467   31 PLPEPIPDPSPVADPSPAANPSPVADPKPvaEPSANPgtgtNAEPGPRSKPNPSPSAPATLLEANKQD 98
Cdd:pfam05616 342 PLPEVSPAENPANNPDPDENPGTRPNPEP--DPDLNP----DANPDTDGQPGTRPDSPAVPDRPNGRD 403
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 31-122 1.68e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 39.70  E-value: 1.68e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404467  31 PLPEPIPDPSPVADPSPAANP---SPVADPKPVAEPSANPGTGTNAEPGPRSKPNPSPSAPATLLEANKQDNFAVPLLET 107
Cdd:PRK14951 387 AAPAAAPVAQAAAAPAPAAAPaaaASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRV 466

                         90
                 ....*....|....*
gi 665404467 108 APQKLDDVQADPQPA 122
Cdd:PRK14951 467 APEPAVASAAPAPAA 481
PRK14960 PRK14960
DNA polymerase III subunit gamma/tau;
33-66 3.03e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237868 [Multi-domain]  Cd Length: 702  Bit Score: 38.88  E-value: 3.03e-04
                         10        20        30
                 ....*....|....*....|....*....|....
gi 665404467  33 PEPIPDPSPVADPSPAANPSPVADPKPVAEPSAN 66
Cdd:PRK14960 412 PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPQPN 445
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
 31-79 6.96e-04

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468203 [Multi-domain]  Cd Length: 871  Bit Score: 38.01  E-value: 6.96e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 665404467  31 PLPEPIPDPspvaDPSPAANPSPVADPKPVAEPSANPGTGTNAEPGPRS 79
Cdd:NF033845 560 PEPEPTPDP----EPSPDPDPEPSPDPDPDSDSDSDSGSDSDSGSDSDS 604
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 35-90 1.89e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 36.79  E-value: 1.89e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 665404467   35 PIPDPSPVADPSPAANPSPVADPKPVAEPSANPGTGTNAEPGPRSKPNPSPSAPAT 90
Cdd:PRK12270   38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAA 93
PHA03247 PHA03247
large tegument protein UL36; Provisional
 31-109 2.10e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 36.45  E-value: 2.10e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 665404467   31 PLPEPIPDPSPVADPSPAANPSPVADPKPVAEPSANPGTGTNAEPGPRSKPNPSPSAPATLLEANKQDNFAVPLLETAP 109
Cdd:PHA03247 2903 DQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQ 2981
PRK01297 PRK01297
ATP-dependent RNA helicase RhlB; Provisional
 33-88 3.49e-03

ATP-dependent RNA helicase RhlB; Provisional


Pssm-ID: 234938 [Multi-domain]  Cd Length: 475  Bit Score: 35.66  E-value: 3.49e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 665404467  33 PEPIPDPSPVADPSPAANPSPVADPKPVAEPSANPGTGTNAEPGPRSKPNPSPSAP 88
Cdd:PRK01297  17 PAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASL 72
PHA03247 PHA03247
large tegument protein UL36; Provisional
 33-107 4.12e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 35.68  E-value: 4.12e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 665404467   33 PEPIPDPSPVADPSPAANPSPVADPKPVAEPSANpgtgtnaePGPRSKPNPSPSAPATLLEANKQDNFAVPLLET 107
Cdd:PHA03247  410 PVPASVPTPAPTPVPASAPPPPATPLPSAEPGSD--------DGPAPPPERQPPAPATEPAPDDPDDATRKALDA 476
PTZ00395 PTZ00395
Sec24-related protein; Provisional
 24-79 4.49e-03

Sec24-related protein; Provisional


Pssm-ID: 185594 [Multi-domain]  Cd Length: 1560  Bit Score: 35.44  E-value: 4.49e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 665404467   24 LHGAYGSPLPEPIPDpSPVADPSPAANPSPVADPKPVAEPSANPGTGTNAEPGPRS 79
Cdd:PTZ00395  511 FHGAAGNSVGNPFAS-RPFGSAPYGGNAATTADPNGIAKREDHPEGGTNRQKYEQS 565
PHA00350 PHA00350
putative assembly protein
 2-91 6.35e-03

putative assembly protein


Pssm-ID: 222783  Cd Length: 399  Bit Score: 34.83  E-value: 6.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404467   2 KFLTVFAFACGIVIllvatFVVLHGAYGSPLPEPIPDPSPVADPSPAANPSPVADPKPVAEPSANPGTGTNAEPGPRSKP 81
Cdd:PHA00350 226 KWKSLVALLLGILS-----FGYYFYALSGKVSDSVKTPAEHQAQTPSGVPTVSGPARPAQTGKPAPVLGPLGDGCTGSGC 300

                         90
                 ....*....|
gi 665404467  82 NPSPSAPATL 91
Cdd:PHA00350 301 GNEPYHDFSL 310
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 30-90 8.79e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 34.87  E-value: 8.79e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 665404467   30 SPLPEPIPDPSPVADPSPAANPSPVADPKPVAEPSANPGTGTNAEPGPRSKPNPSPSAPAT 90
Cdd:PRK12270   57 APAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK14960 PRK14960
DNA polymerase III subunit gamma/tau;
23-59 9.03e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237868 [Multi-domain]  Cd Length: 702  Bit Score: 34.64  E-value: 9.03e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 665404467  23 VLHGAYGSPLPEPIPDPSPVADPSPAANPSPVADPKP 59
Cdd:PRK14960 408 AMVEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPQP 444
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH