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Conserved domains on  [gi|451770394|ref|NP_001263406|]
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small ribosomal subunit protein eS27-like [Rattus norvegicus]

Protein Classification

40S ribosomal protein S27( domain architecture ID 10010701)

40S ribosomal protein S27 is a zinc finger protein that is thought to function in DNA repair and oncogenesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00209 PLN00209
ribosomal protein S27; Provisional
 6-82 3.44e-43

ribosomal protein S27; Provisional


:

Pssm-ID: 165774  Cd Length: 86  Bit Score: 134.94  E-value: 3.44e-43
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 451770394  6 DLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82
Cdd:PLN00209  8 DLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGSCQTVLCQPTGGKARLTEGCSFRKK 84
 
Name Accession Description Interval E-value
PLN00209 PLN00209
ribosomal protein S27; Provisional
 6-82 3.44e-43

ribosomal protein S27; Provisional


Pssm-ID: 165774  Cd Length: 86  Bit Score: 134.94  E-value: 3.44e-43
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 451770394  6 DLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82
Cdd:PLN00209  8 DLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGSCQTVLCQPTGGKARLTEGCSFRKK 84
Ribosomal_S27e pfam01667
Ribosomal protein S27;
28-82 2.04e-28

Ribosomal protein S27;


Pssm-ID: 279935  Cd Length: 55  Bit Score: 96.37  E-value: 2.04e-28
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 451770394  28 PNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82
Cdd:pfam01667  1 PNSYFLDVKCPGCGNITTVFSHAQTVVKCIICGKVLCEPTGGKAKLKAGISFRRK 55
RPS27A COG2051
Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 24-73 4.54e-14

Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S27E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441654  Cd Length: 60  Bit Score: 60.29  E-value: 4.54e-14
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 451770394 24 LVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARL 73
Cdd:COG2051   4 LIPEPRSKFLKVKCPDCGNEQIVFSHASTVVRCLVCGTTLAEPTGGKAKI 53
 
Name Accession Description Interval E-value
PLN00209 PLN00209
ribosomal protein S27; Provisional
 6-82 3.44e-43

ribosomal protein S27; Provisional


Pssm-ID: 165774  Cd Length: 86  Bit Score: 134.94  E-value: 3.44e-43
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 451770394  6 DLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82
Cdd:PLN00209  8 DLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGSCQTVLCQPTGGKARLTEGCSFRKK 84
PTZ00083 PTZ00083
40S ribosomal protein S27; Provisional
 6-82 1.52e-41

40S ribosomal protein S27; Provisional


Pssm-ID: 185434  Cd Length: 85  Bit Score: 130.56  E-value: 1.52e-41
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 451770394  6 DLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82
Cdd:PTZ00083  7 DLLYPDPESEARKHKLKRLVQGPNSYFMDVKCPGCSQITTVFSHAQTVVLCGGCSSQLCQPTGGKAKLTEGCSFRRK 83
Ribosomal_S27e pfam01667
Ribosomal protein S27;
28-82 2.04e-28

Ribosomal protein S27;


Pssm-ID: 279935  Cd Length: 55  Bit Score: 96.37  E-value: 2.04e-28
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 451770394  28 PNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82
Cdd:pfam01667  1 PNSYFLDVKCPGCGNITTVFSHAQTVVKCIICGKVLCEPTGGKAKLKAGISFRRK 55
RPS27A COG2051
Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 24-73 4.54e-14

Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S27E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441654  Cd Length: 60  Bit Score: 60.29  E-value: 4.54e-14
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 451770394 24 LVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARL 73
Cdd:COG2051   4 LIPEPRSKFLKVKCPDCGNEQIVFSHASTVVRCLVCGTTLAEPTGGKAKI 53
rps27e PRK00415
30S ribosomal protein S27e; Reviewed
 24-73 1.01e-12

30S ribosomal protein S27e; Reviewed


Pssm-ID: 179013  Cd Length: 59  Bit Score: 56.84  E-value: 1.01e-12
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 451770394 24 LVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARL 73
Cdd:PRK00415  1 LIPQPRSRFLKVKCPDCGNEQVVFSHASTVVRCLVCGKTLAEPTGGKAKI 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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