|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
994-1801 |
2.06e-25 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 115.92 E-value: 2.06e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 994 KQLNDTIQNLEKVNAKLSEdntvshtvhskLNESL--LKAQKELDLRAKIIEN-LEASERNLS-MKLCELKDLKNKLKSS 1069
Cdd:TIGR02168 179 RKLERTRENLDRLEDILNE-----------LERQLksLERQAEKAERYKELKAeLRELELALLvLRLEELREELEELQEE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1070 DEKIAQIKETYEEQIKALQAKCD--------MEAKKNEHLERNQNQS-----LTQLKEDALENCVLMSTKLEELQAKLQE 1136
Cdd:TIGR02168 248 LKEAEEELEELTAELQELEEKLEelrlevseLEEEIEELQKELYALAneisrLEQQKQILRERLANLERQLEELEAQLEE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1137 GQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLEC 1216
Cdd:TIGR02168 328 LESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEA 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1217 QKESGQQLVDNLKVELEKERKE------------LAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQV 1284
Cdd:TIGR02168 408 RLERLEDRRERLQQEIEELLKKleeaelkelqaeLEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1285 NSAFEAqtklsddLQRQKESAQQLVDNLKVELDKERK---------ELAQVNSAFEA--QTKLSDDLQ----REKESAQQ 1349
Cdd:TIGR02168 488 QARLDS-------LERLQENLEGFSEGVKALLKNQSGlsgilgvlsELISVDEGYEAaiEAALGGRLQavvvENLNAAKK 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1350 LVDNLKvELDKERKELAQVkSVIEAQTKLSDDLQRQKEsaQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQrqke 1429
Cdd:TIGR02168 561 AIAFLK-QNELGRVTFLPL-DSIKGTEIQGNDREILKN--IEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLD---- 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1430 SAQQLVDNLKME-----LDKER--------KELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAKVNS 1496
Cdd:TIGR02168 633 NALELAKKLRPGyrivtLDGDLvrpggvitGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEE 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1497 AFEaqtklsdDLKLQKEDAQREVFLVKERLVKEKREFEvklaTLEDIIETLEMRCTQMEEERATAYEQINKLENRCQE-K 1575
Cdd:TIGR02168 713 ELE-------QLRKELEELSRQISALRKDLARLEAEVE----QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEaE 781
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1576 DNVKSSQLQVETFKVECLhhQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDipKVVEL 1655
Cdd:TIGR02168 782 AEIEELEAQIEQLKEELK--ALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE--DIESL 857
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1656 QHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAqilrMEETAREVGNKNAELceliefyRNRVEALERLLLA 1735
Cdd:TIGR02168 858 AAEIEELEELIEELESELEALLNERASLEEALALLRSELEE----LSEELRELESKRSEL-------RRELEELREKLAQ 926
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442616328 1736 SNQELEELNSIQSNQAEGVRDLGdtysaaegrQTESDQDKERYQKLALDCKILQAKYRDAKDEIKR 1801
Cdd:TIGR02168 927 LELRLEGLEVRIDNLQERLSEEY---------SLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1022-1827 |
1.24e-24 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 113.23 E-value: 1.24e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1022 SKLNESLLKAQKELDlraKIIENLEASERNLSmklcELKDLKNKLKSSDEKIAQIKEtYEEQIKALQAkcDMEAKKNEHL 1101
Cdd:TIGR02168 168 SKYKERRKETERKLE---RTRENLDRLEDILN----ELERQLKSLERQAEKAERYKE-LKAELRELEL--ALLVLRLEEL 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1102 ERNQNQSLTQLKEdalencvlMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQ 1181
Cdd:TIGR02168 238 REELEELQEELKE--------AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRE 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1182 LVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKE 1261
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1262 SAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQqlVDNLKVELDKERKELAQVNSAFEaqtklsdDLQ 1341
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE--LKELQAELEELEEELEELQEELE-------RLE 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1342 REKESAQQLVDNLKVELDKERKELAQVKSVIEAqtklSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTK-- 1419
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAERELAQLQARLDS----LERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGye 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1420 ------LSDDLQ----RQKESAQQLVDNLKmELDKERKELAQVKSaIGAQTKLSDDLECQKEsvQQLVDNLKVELEKERK 1489
Cdd:TIGR02168 537 aaieaaLGGRLQavvvENLNAAKKAIAFLK-QNELGRVTFLPLDS-IKGTEIQGNDREILKN--IEGFLGVAKDLVKFDP 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1490 ELAKVNSAFEAQTKLSDDLK----LQKEDAQREVFLVKE--------RLVKEKREFE-------VKLATLEDIIETLEMR 1550
Cdd:TIGR02168 613 KLRKALSYLLGGVLVVDDLDnaleLAKKLRPGYRIVTLDgdlvrpggVITGGSAKTNssilerrREIEELEEKIEELEEK 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1551 CTQMEEERATAYEQINKLENRCQEKD------NVKSSQLQVETFKVECLHHQLKSEMATHNSLVEDLNRKLAEKVSKLDF 1624
Cdd:TIGR02168 693 IAELEKALAELRKELEELEEELEQLRkeleelSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1625 VQSRLMTEIAEHNQVKDQLAQI-----TDIPKVVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQIL 1699
Cdd:TIGR02168 773 AEEELAEAEAEIEELEAQIEQLkeelkALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE 852
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1700 RMEETAREVGNKNAELCELIEfyrnRVEALERLLLASNQELEELNSIQSNQAEGVRDLGDTYSAAEgRQTESDQDK---- 1775
Cdd:TIGR02168 853 DIESLAAEIEELEELIEELES----ELEALLNERASLEEALALLRSELEELSEELRELESKRSELR-RELEELREKlaql 927
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*..
gi 442616328 1776 -ERYQKLALDCKILQAK----YRDAKDEIKRCEKKIKDQRLEMEGKLEKMKNKMRSL 1827
Cdd:TIGR02168 928 eLRLEGLEVRIDNLQERlseeYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1228-1896 |
1.07e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 103.60 E-value: 1.07e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1228 LKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQ 1307
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1308 LVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSvieaqtkLSDDLQRQKE 1387
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELES-------RLEELEEQLE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1388 SAQQLVDNLKVELDKERKELAKVKSVIEAqtkLSDDLQRQKESAQQLVDNL-KMELDKERKELAQVKSAIGAQTKLSDDL 1466
Cdd:TIGR02168 383 TLRSKVAQLELQIASLNNEIERLEARLER---LEDRRERLQQEIEELLKKLeEAELKELQAELEELEEELEELQEELERL 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1467 ECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKlQKEDAQREVFLVKERL------------VKEKREFE 1534
Cdd:TIGR02168 460 EEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE-GFSEGVKALLKNQSGLsgilgvlselisVDEGYEAA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1535 VKLA--------------TLEDIIETLE----MRCTQMEEERATAYEQINKLENRCQEKDNVKSSQLQVETFKVEclHHQ 1596
Cdd:TIGR02168 539 IEAAlggrlqavvvenlnAAKKAIAFLKqnelGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPK--LRK 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1597 LKSEMATHNSLVEDL---NRKLAEKVSKLDFV---------------------QSRLMT--EIAEHNQVKDQLAQitdip 1650
Cdd:TIGR02168 617 ALSYLLGGVLVVDDLdnaLELAKKLRPGYRIVtldgdlvrpggvitggsaktnSSILERrrEIEELEEKIEELEE----- 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1651 KVVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLE---HGAQILRMEETAREVGNKNAELCELIEFYRNRVE 1727
Cdd:TIGR02168 692 KIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDlarLEAEVEQLEERIAQLSKELTELEAEIEELEERLE 771
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1728 ALERLLLASNQELEELNSIQSNQAEGVRDLGDTYSAAEGRQTESdqdKERYQKLALDCKILQAKYRDAKDEIKRCEKKIK 1807
Cdd:TIGR02168 772 EAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL---NEEAANLRERLESLERRIAATERRLEDLEEQIE 848
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1808 DQRLEMEG------KLEKMKNKMRSlYTAEVTRMKEKQERDAAKSASELEALTAQNAKYEEHTRKLSNQIVRLNEKILEQ 1881
Cdd:TIGR02168 849 ELSEDIESlaaeieELEELIEELES-ELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQL 927
|
730
....*....|....*
gi 442616328 1882 QKQHAIISTNLRHLQ 1896
Cdd:TIGR02168 928 ELRLEGLEVRIDNLQ 942
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
938-1643 |
3.88e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 101.67 E-value: 3.88e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 938 MTEFLKMYDQMEVRYEESSSLVEKLTESQAKLEMQVAELQVELENKDTNQHS-GALIKQLNDTIQNLEKVNAKLSEDNTV 1016
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEElQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1017 SHTVHSKLNESLLKAQKELDLRAkiiENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIK---ETYEEQIKALQAKCDm 1093
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELA---EELAELEEKLEELKEELESLEAELEELEAELEELEsrlEELEEQLETLRSKVA- 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1094 EAKKNEHLERNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQqlVDSQKLELDMNRKELALVKSAYEaqtklsdDLQ 1173
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE--LKELQAELEELEEELEELQEELE-------RLE 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1174 RQKESGQQLVDNLKVELEKERKELAHVNSAIgaqtklsDDLECQKESGQQLVDNLKvELEKERKELAQVKSVIEAQ---- 1249
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAERELAQLQARL-------DSLERLQENLEGFSEGVK-ALLKNQSGLSGILGVLSELisvd 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1250 --------TKLSDDLQ----REKESAQQLVDNLK---------VELDKERKELAQVNSAFEAQTK-----LSDDLQRQKE 1303
Cdd:TIGR02168 533 egyeaaieAALGGRLQavvvENLNAAKKAIAFLKqnelgrvtfLPLDSIKGTEIQGNDREILKNIegflgVAKDLVKFDP 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1304 SAQQL----------VDNLKVELDKERKELAQVN--------------SAFEAQTKLSDDLQREKESAQ--QLVDNLKVE 1357
Cdd:TIGR02168 613 KLRKAlsyllggvlvVDDLDNALELAKKLRPGYRivtldgdlvrpggvITGGSAKTNSSILERRREIEEleEKIEELEEK 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1358 LDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLVDN 1437
Cdd:TIGR02168 693 IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1438 LKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQR 1517
Cdd:TIGR02168 773 AEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE 852
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1518 EVFLVK---ERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDN--------VKSSQLQVE 1586
Cdd:TIGR02168 853 DIESLAaeiEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRReleelrekLAQLELRLE 932
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*..
gi 442616328 1587 TFKVECLHhqLKSEMATHNSLVEDLnrkLAEKVSKLDFVQSRLMTEIAEHNQVKDQL 1643
Cdd:TIGR02168 933 GLEVRIDN--LQERLSEEYSLTLEE---AEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
818-1567 |
1.32e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 100.13 E-value: 1.32e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 818 LKRELDDLRSKNEELAKQnINGIIKRNKFITSLEVNTEKVKQYITDLEEEAFKRKQKVVQLENTLSKEQSNAKEMAQRLD 897
Cdd:TIGR02168 279 LEEEIEELQKELYALANE-ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 898 IAQQEIKDYHVEAIRFINTIRDRLQQDFNGVN-TPQQLGTCMTEFLkmydQMEVRYEESSSLVEKLTESQAKLEMQVAEL 976
Cdd:TIGR02168 358 AELEELEAELEELESRLEELEEQLETLRSKVAqLELQIASLNNEIE----RLEARLERLEDRRERLQQEIEELLKKLEEA 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 977 QVelenKDTNQHSGALIKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNESLLKAQkELDLRAKIIENLEASERNLSMKL 1056
Cdd:TIGR02168 434 EL----KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA-QLQARLDSLERLQENLEGFSEGV 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1057 CELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKC-----------DMEAKKN-EHLERNQNQSLTQLKEDalencVLMS 1124
Cdd:TIGR02168 509 KALLKNQSGLSGILGVLSELISVDEGYEAAIEAALggrlqavvvenLNAAKKAiAFLKQNELGRVTFLPLD-----SIKG 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1125 TKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQ------------------------------R 1174
Cdd:TIGR02168 584 TEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDnalelakklrpgyrivtldgdlvrpggvitG 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1175 QKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSD 1254
Cdd:TIGR02168 664 GSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE 743
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1255 DLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQT 1334
Cdd:TIGR02168 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLR 823
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1335 KLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVI 1414
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1415 EAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQtkLSDDLECQKESVQQLVDNLKV------ELEKER 1488
Cdd:TIGR02168 904 RELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE--YSLTLEEAEALENKIEDDEEEarrrlkRLENKI 981
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1489 KELAKVNSA----FEAQTKLSDDLKLQKEDAQRevflvkerlvkekrefevKLATLEDIIETLEMRCTqmeEERATAYEQ 1564
Cdd:TIGR02168 982 KELGPVNLAaieeYEELKERYDFLTAQKEDLTE------------------AKETLEEAIEEIDREAR---ERFKDTFDQ 1040
|
...
gi 442616328 1565 INK 1567
Cdd:TIGR02168 1041 VNE 1043
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
790-1632 |
9.46e-20 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 97.52 E-value: 9.46e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 790 NFLESMHIEKrfenIEMLIEGQLLSADDLKRELDDLRSKNEELAKQNIN---GIIKRNKFITSLEVNTEKVKQYITDLEE 866
Cdd:PTZ00121 1019 DFNQNFNIEK----IEELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKahvGQDEGLKPSYKDFDFDAKEDNRADEATE 1094
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 867 EAFKRKQKVVQLENTLSKEQSNAKEMAQRLDIAQQEIKDYHVEAIRFINTIRDRLQQDFNGVNTPQQLGTCMTEFLKMYD 946
Cdd:PTZ00121 1095 EAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAED 1174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 947 QMEVRYEESSSLVEKLTESQAKLEMQVAELQVELENkdtnqhsgalikqlndtIQNLEKVnaKLSEDNTVSHTVHsKLNE 1026
Cdd:PTZ00121 1175 AKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEE-----------------ERKAEEA--RKAEDAKKAEAVK-KAEE 1234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1027 SllKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLERN-- 1104
Cdd:PTZ00121 1235 A--KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKae 1312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1105 QNQSLTQLKEDALEncvlMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKlsddlqrQKESGQQLVD 1184
Cdd:PTZ00121 1313 EAKKADEAKKKAEE----AKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEK-------KKEEAKKKAD 1381
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1185 NLKVELEKERKELAHVNSAIGAQTKlSDDLEcQKESGQQLVDNLKVELEKERKELAQVKSVIEAqtKLSDDLQREKESAQ 1264
Cdd:PTZ00121 1382 AAKKKAEEKKKADEAKKKAEEDKKK-ADELK-KAAAAKKKADEAKKKAEEKKKADEAKKKAEEA--KKADEAKKKAEEAK 1457
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1265 QlVDNLKVELDKERKELAQVNSAFEAqtKLSDDLQRQKESAQQLVDnlkvELDKERKELAQVNSAFEAQTKLSDDLQREK 1344
Cdd:PTZ00121 1458 K-AEEAKKKAEEAKKADEAKKKAEEA--KKADEAKKKAEEAKKKAD----EAKKAAEAKKKADEAKKAEEAKKADEAKKA 1530
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1345 ESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDK-ERKELAKVKSVIEAQTKLSDD 1423
Cdd:PTZ00121 1531 EEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKaEEARIEEVMKLYEEEKKMKAE 1610
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1424 LQRQKESAQQLVDNLKMElDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTK 1503
Cdd:PTZ00121 1611 EAKKAEEAKIKAEELKKA-EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK 1689
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1504 LSDDLKLQKEDAQrevflvKERLVKEKREFEVKLAtlEDIIETLEMRCTQMEEERATAYEQINKLEN-RCQEKDNVKSSQ 1582
Cdd:PTZ00121 1690 AAEALKKEAEEAK------KAEELKKKEAEEKKKA--EELKKAEEENKIKAEEAKKEAEEDKKKAEEaKKDEEEKKKIAH 1761
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|.
gi 442616328 1583 LQVETFKVECLHHQLKSEMATHNSLVEDLNRKL-AEKVSKLDFVQSRLMTE 1632
Cdd:PTZ00121 1762 LKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMeVDKKIKDIFDNFANIIE 1812
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1231-1807 |
6.52e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 94.23 E-value: 6.52e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1231 ELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVD 1310
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1311 NLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQ 1390
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1391 QLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQK 1470
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1471 ESVQQLVDNLKVELEKER-KELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREFEVKLATLEDIIETLEM 1549
Cdd:COG1196 473 ALLEAALAELLEELAEAAaRLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1550 RctqmeEERATAYEQINKLenrcqekdnvKSSQLQVETFKVECLHHQLKSEMATHNSLVEDLNRKL-AEKVSKLDFVQSR 1628
Cdd:COG1196 553 V-----EDDEVAAAAIEYL----------KAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLvASDLREADARYYV 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1629 LMTEIAEHNQVKDQLAQITDIPkvVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETAREV 1708
Cdd:COG1196 618 LGDTLLGRTLVAARLEAALRRA--VTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELEL 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1709 GNKNAELCELIEFYRNRVEALERLLLASNQELEELNSIQSNQAEGVRDLGDTYSAAEGRQTESDQDKEryqklaldckil 1788
Cdd:COG1196 696 EEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE------------ 763
|
570
....*....|....*....
gi 442616328 1789 qakyrDAKDEIKRCEKKIK 1807
Cdd:COG1196 764 -----ELERELERLEREIE 777
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
960-1567 |
1.64e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 93.08 E-value: 1.64e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 960 EKLTESQAKLEMQVAELQVELENKDTNQ-HSGALIKQLNDTIQNLEK-VNAKLSEDNTVSHTVHSKLNESLLKAQKELDL 1037
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELaELEAELEELRLELEELELeLEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1038 RAKIIEN----------LEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCD---------MEAKKN 1098
Cdd:COG1196 315 EERLEELeeelaeleeeLEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEeleelaeelLEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1099 EHLERNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKES 1178
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1179 GQQLVDNLKVELEKERKELAHVNSAIG-AQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVkSVIEAQTKLSDDLQ 1257
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEAdYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAA-LEAALAAALQNIVV 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1258 REKESAQQLVDNLKveldKERKELAqvnsAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLS 1337
Cdd:COG1196 554 EDDEVAAAAIEYLK----AAKAGRA----TFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGR 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1338 DDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQ 1417
Cdd:COG1196 626 TLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEE 705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1418 TKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKE-SVQQLVDNLKvELEKERKELAKVNS 1496
Cdd:COG1196 706 ERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPpDLEELERELE-RLEREIEALGPVNL 784
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442616328 1497 A----FEAQTKLSDDLKLQKEDaqrevfLVKERlvkekrefevklATLEDIIETLEmrcTQMEEERATAYEQINK 1567
Cdd:COG1196 785 LaieeYEELEERYDFLSEQRED------LEEAR------------ETLEEAIEEID---RETRERFLETFDAVNE 838
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1113-1905 |
7.89e-18 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 90.90 E-value: 7.89e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1113 KEDALENCVLMSTKLEELQAKLQE-GQQLvdsQKLELDMNRKE----LALVKSAYEAQTKLSD--DLQRQKESGQQLVDN 1185
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEkRQQL---ERLRREREKAEryqaLLKEKREYEGYELLKEkeALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1186 LKVELEKERKELAHVNSAIGAQTKLSDDLECQ-KESGQQLVDNLKVELEKERKELAQVKSVIEAqtklsddLQREKESAQ 1264
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKiKDLGEEEQLRVKEKIGELEAEIASLERSIAE-------KERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1265 QLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREK 1344
Cdd:TIGR02169 322 ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREI 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1345 ESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDL 1424
Cdd:TIGR02169 402 NELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRV 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1425 QRQKESAQQLVDNLKMELDKERKElaqVKSAIGAQTKLSDDLECQKESVQQLVdnlKVeleKERKELAkVNSAfeAQTKL 1504
Cdd:TIGR02169 482 EKELSKLQRELAEAEAQARASEER---VRGGRAVEEVLKASIQGVHGTVAQLG---SV---GERYATA-IEVA--AGNRL 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1505 SDDLKLQKEDAQREVFLVKER---------LVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQI-------NKL 1568
Cdd:TIGR02169 550 NNVVVEDDAVAKEAIELLKRRkagratflpLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVfgdtlvvEDI 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1569 ENRCQEKDNVKSSQLQVETFKVECL----HHQLKSEMATHNSLVEDLNRkLAEKVSKLDFVQSRLMTEIAEHNQVKDQLA 1644
Cdd:TIGR02169 630 EAARRLMGKYRMVTLEGELFEKSGAmtggSRAPRGGILFSRSEPAELQR-LRERLEGLKRELSSLQSELRRIENRLDELS 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1645 QITDIP--KVVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEhgaqilrMEETAREVGNKNAELCEliefY 1722
Cdd:TIGR02169 709 QELSDAsrKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE-------LKELEARIEELEEDLHK----L 777
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1723 RNRVEALERLLlaSNQELEELNSIQSNQAEGVRDLGDTYSAAEGRQTESDQDKERYQKLALDckiLQAKYRDAKDEIKRC 1802
Cdd:TIGR02169 778 EEALNDLEARL--SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQE---LQEQRIDLKEQIKSI 852
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1803 EKKIKDQRLEMEGKLEKMKNKMRSLYTAEVTRMKEKQERDAAKsaSELEALtaqnakyEEHTRKLSNQIVRLNEKILEQQ 1882
Cdd:TIGR02169 853 EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELE--AQLREL-------ERKIEELEAQIEKKRKRLSELK 923
|
810 820
....*....|....*....|....*...
gi 442616328 1883 KQHAIISTNLRHL-----QMQPISETKP 1905
Cdd:TIGR02169 924 AKLEALEEELSEIedpkgEDEEIPEEEL 951
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1129-1689 |
1.90e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 89.61 E-value: 1.90e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1129 ELQAKLQEGQQLVdsQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQT 1208
Cdd:COG1196 217 ELKEELKELEAEL--LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1209 KLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEaqtklsdDLQREKESAQQLVDNLKVELDKERKELAQVNSAF 1288
Cdd:COG1196 295 AELARLEQDIARLEERRRELEERLEELEEELAELEEELE-------ELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1289 EAQTKLSDDLQRQKESAQQLvdnlkvELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQV 1368
Cdd:COG1196 368 LEAEAELAEAEEELEELAEE------LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1369 KSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKE 1448
Cdd:COG1196 442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1449 LAQ-VKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAKVNSA----FEAQTKLSDDLKLQKEDAQREVFLVK 1523
Cdd:COG1196 522 LAGaVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAgratFLPLDKIRARAALAAALARGAIGAAV 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1524 ERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNV---------KSSQLQVETFKVECLH 1594
Cdd:COG1196 602 DLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGsaggsltggSRRELLAALLEAEAEL 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1595 HQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDIPKVVELQHRLEAETAEREEAQN--K 1672
Cdd:COG1196 682 EELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEppD 761
|
570
....*....|....*..
gi 442616328 1673 LAVVTGRLDEITRELDN 1689
Cdd:COG1196 762 LEELERELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
994-1611 |
2.60e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 89.23 E-value: 2.60e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 994 KQLNDTIQNLEKVNAKLSEdntvshtVHSKLNEslLKAQKELDLRAKIIENlEASERNLSMKLCELKDLKNKLKSSDEKI 1073
Cdd:COG1196 179 RKLEATEENLERLEDILGE-------LERQLEP--LERQAEKAERYRELKE-ELKELEAELLLLKLRELEAELEELEAEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1074 AQIKETYEEQIKALQAkcdmeakknehlernqnqsltqlkedalencvlMSTKLEELQAKLQEGQQLVDSQKLELDMNRK 1153
Cdd:COG1196 249 EELEAELEELEAELAE---------------------------------LEAELEELRLELEELELELEEAQAEEYELLA 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1154 ELAlvksayeaqtklsdDLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELE 1233
Cdd:COG1196 296 ELA--------------RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELA 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1234 KERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLK 1313
Cdd:COG1196 362 EAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1314 VELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQlv 1393
Cdd:COG1196 442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL-- 519
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1394 DNLKVELDKERKELAKVKSVIEA------QTKLSDDLQRQKESAQQLVDNL----------KMELDKERKELAQVKSAIG 1457
Cdd:COG1196 520 RGLAGAVAVLIGVEAAYEAALEAalaaalQNIVVEDDEVAAAAIEYLKAAKagratflpldKIRARAALAAALARGAIGA 599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1458 AQTKLSDDLECQKESVQQLVDNLKVE-LEKERKELAKVNSAFEAQTKL--SDDLKLQKEDAQREVFLVKERLVKEKREFE 1534
Cdd:COG1196 600 AVDLVASDLREADARYYVLGDTLLGRtLVAARLEAALRRAVTLAGRLRevTLEGEGGSAGGSLTGGSRRELLAALLEAEA 679
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442616328 1535 VKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKSSQLQVETFKVECLHHQLKSEMATHNSLVEDL 1611
Cdd:COG1196 680 ELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEEL 756
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1122-1659 |
9.03e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 87.30 E-value: 9.03e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1122 LMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHVN 1201
Cdd:COG1196 229 LLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1202 SAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQ--------VKSVIEAQTKLSDDLQREKESAQQLVDNLKVE 1273
Cdd:COG1196 309 ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEaeeeleeaEAELAEAEEALLEAEAELAEAEEELEELAEEL 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1274 LDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDN 1353
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAEL 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1354 LKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQ 1433
Cdd:COG1196 469 LEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAAL 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1434 LVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLkvELEKERKELAKVNSAFEAQTKLSDDLKLQKE 1513
Cdd:COG1196 549 QNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARG--AIGAAVDLVASDLREADARYYVLGDTLLGRT 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1514 DAQREVFLVKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKSSQLQVETFKVECL 1593
Cdd:COG1196 627 LVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEE 706
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442616328 1594 HHQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDIPkvvELQHRL 1659
Cdd:COG1196 707 RELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE---ELEREL 769
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1058-1857 |
6.50e-16 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 84.81 E-value: 6.50e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1058 ELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLERNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEG 1137
Cdd:PTZ00121 1198 DARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEA 1277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1138 QQLVDSQKLELDMNRKELAL---VKSAYEAQTKL-----SDDLQRQKESGQQLVDNLKVELEkERKELAHVNSAigAQTK 1209
Cdd:PTZ00121 1278 RKADELKKAEEKKKADEAKKaeeKKKADEAKKKAeeakkADEAKKKAEEAKKKADAAKKKAE-EAKKAAEAAKA--EAEA 1354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1210 LSDDLECQKESGQqlVDNLKVELEKERKELAQVKSvieAQTKLSDDLQREKESAQQLVDNLKvELDKERKELAQVNSAFE 1289
Cdd:PTZ00121 1355 AADEAEAAEEKAE--AAEKKKEEAKKKADAAKKKA---EEKKKADEAKKKAEEDKKKADELK-KAAAAKKKADEAKKKAE 1428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1290 AQTKlSDDLQRQKESAQQlVDNLKVELDKERKELAQVNSAFEAqtKLSDDLQREKESAQQlVDNLKVELDKERKELAQVK 1369
Cdd:PTZ00121 1429 EKKK-ADEAKKKAEEAKK-ADEAKKKAEEAKKAEEAKKKAEEA--KKADEAKKKAEEAKK-ADEAKKKAEEAKKKADEAK 1503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1370 SVIEAQTKLsdDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMEldkERKEL 1449
Cdd:PTZ00121 1504 KAAEAKKKA--DEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAE---EDKNM 1578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1450 AQVKSAIGAQ---TKLSDDLECQKESVQQLVDNLKVElEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKERL 1526
Cdd:PTZ00121 1579 ALRKAEEAKKaeeARIEEVMKLYEEEKKMKAEEAKKA-EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEE 1657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1527 VKEKREFEVKLATLEDIIETLEMRctQMEEERATAYEQINKLENRCQEKDNVKSSQLQvETFKVEclhhQLKSEMATHNS 1606
Cdd:PTZ00121 1658 ENKIKAAEEAKKAEEDKKKAEEAK--KAEEDEKKAAEALKKEAEEAKKAEELKKKEAE-EKKKAE----ELKKAEEENKI 1730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1607 LVEDLNRKLAEKVSKLDfvqsRLMTEIAEHNQVKdqlaqitdipkvvelQHRLEAETAEREEAQNKLAVVTGRLDEITRE 1686
Cdd:PTZ00121 1731 KAEEAKKEAEEDKKKAE----EAKKDEEEKKKIA---------------HLKKEEEKKAEEIRKEKEAVIEEELDEEDEK 1791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1687 LDNARLEHGAQILRMEETAREVGNKNAELCELIEfyRNRVEALERLLLASNQELEELNSIQSNQaegvrdLGDTYSAAEG 1766
Cdd:PTZ00121 1792 RRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSK--EMEDSAIKEVADSKNMQLEEADAFEKHK------FNKNNENGED 1863
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1767 RQTESDQDKERYQKLALDCKILQAKYrdakdeikrcEKKIKDQRLEMEGKLEKMK-NKMRSLYTAevTRMKEKQERDAAK 1845
Cdd:PTZ00121 1864 GNKEADFNKEKDLKEDDEEEIEEADE----------IEKIDKDDIEREIPNNNMAgKNNDIIDDK--LDKDEYIKRDAEE 1931
|
810
....*....|..
gi 442616328 1846 SASELEALTAQN 1857
Cdd:PTZ00121 1932 TREEIIKISKKD 1943
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1023-1534 |
1.81e-15 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 83.65 E-value: 1.81e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1023 KLNESLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKI-AQIKETYEEQIKALQAKCDMEAKKNEHl 1101
Cdd:PTZ00121 1316 KADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAeAAEKKKEEAKKKADAAKKKAEEKKKAD- 1394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1102 ERNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQQlVDSQKLELDMNRKELALVKSAYEA-----------QTKLSD 1170
Cdd:PTZ00121 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK-ADEAKKKAEEAKKADEAKKKAEEAkkaeeakkkaeEAKKAD 1473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1171 DLQRQKESGQQlVDNLKVELEKERKELAHVNSAIGAQTKlSDDL----------ECQKESGQQLVDNL-KVELEKERKEL 1239
Cdd:PTZ00121 1474 EAKKKAEEAKK-ADEAKKKAEEAKKKADEAKKAAEAKKK-ADEAkkaeeakkadEAKKAEEAKKADEAkKAEEKKKADEL 1551
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1240 AQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDK-ERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVElDK 1318
Cdd:PTZ00121 1552 KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKaEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA-EE 1630
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1319 ERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQlVDNLKV 1398
Cdd:PTZ00121 1631 EKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK-AEELKK 1709
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1399 ELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMElDKERKELAQVK--SAIGAQTKLSDDLECQKESVQQL 1476
Cdd:PTZ00121 1710 KEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD-EEEKKKIAHLKkeEEKKAEEIRKEKEAVIEEELDEE 1788
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442616328 1477 VDNLKVELEKERKEL----AKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREFE 1534
Cdd:PTZ00121 1789 DEKRRMEVDKKIKDIfdnfANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFE 1850
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
993-1612 |
2.84e-15 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 82.38 E-value: 2.84e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 993 IKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNESLLKAQKELDLRAKIIENLEAsernlsmklcELKDLKNKLKSSDEK 1072
Cdd:TIGR04523 70 INNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEV----------ELNKLEKQKKENKKN 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1073 IAQIKEtyeeQIKALQAKCDmeaKKNehlerNQNQSLTQLKEDaLENcvlmstKLEELQAKLQEGQQLVDSQKLELDMNR 1152
Cdd:TIGR04523 140 IDKFLT----EIKKKEKELE---KLN-----NKYNDLKKQKEE-LEN------ELNLLEKEKLNIQKNIDKIKNKLLKLE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1153 KELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLkvelEKERKELAHVNSAIG-AQTKLSDDLECQKESGQQLVDNLKvE 1231
Cdd:TIGR04523 201 LLLSNLKKKIQKNKSLESQISELKKQNNQLKDNI----EKKQQEINEKTTEISnTQTQLNQLKDEQNKIKKQLSEKQK-E 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1232 LEKERKELAQV-KSVIEAQTKLSDdLQREKEsaQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVD 1310
Cdd:TIGR04523 276 LEQNNKKIKELeKQLNQLKSEISD-LNNQKE--QDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELT 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1311 NLKVELDKERKELAQVNSAFEaqtklsdDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQ 1390
Cdd:TIGR04523 353 NSESENSEKQRELEEKQNEIE-------KLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLE 425
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1391 QLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLVD-------NLKMELDKERKELAQVKSAIGAQTKLS 1463
Cdd:TIGR04523 426 KEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKvlsrsinKIKQNLEQKQKELKSKEKELKKLNEEK 505
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1464 DDLECQKESVQQLVDNLKVELEKERKELAKVNSAFeaqTKLSDDLKLQKEDaqrevfLVKERLVKEKREFEVKLATLEDI 1543
Cdd:TIGR04523 506 KELEEKVKDLTKKISSLKEKIEKLESEKKEKESKI---SDLEDELNKDDFE------LKKENLEKEIDEKNKEIEELKQT 576
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442616328 1544 IETLEMRCTQMEEERATAYEQINKLENRCQEKDnVKSSQLQVETFKVECLHHQLKSEMATHNSLVEDLN 1612
Cdd:TIGR04523 577 QKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKE-KKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLK 644
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
876-1545 |
2.48e-14 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 79.29 E-value: 2.48e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 876 VQLENTLSKEQSNAKEMAQRLDIAQQEIKDYHVEaIRFINTIRDRLQQDFNGVNTP-----QQLGTCMTEFLKMYDQMEV 950
Cdd:TIGR04523 22 VGYKNIANKQDTEEKQLEKKLKTIKNELKNKEKE-LKNLDKNLNKDEEKINNSNNKikileQQIKDLNDKLKKNKDKINK 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 951 RYEESSSLVEKL---TESQAKLEMQVAELQVELENKDTNqhsgalIKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNES 1027
Cdd:TIGR04523 101 LNSDLSKINSEIkndKEQKNKLEVELNKLEKQKKENKKN------IDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENE 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1028 LLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLERNQNQ 1107
Cdd:TIGR04523 175 LNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQ 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1108 sLTQLKEdalencvlmstKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEaqtklsdDLQRQKEsgQQLVDNLK 1187
Cdd:TIGR04523 255 -LNQLKD-----------EQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEIS-------DLNNQKE--QDWNKELK 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1188 VELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEaqtklsdDLQREKESAQQLV 1267
Cdd:TIGR04523 314 SELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIE-------KLKKENQSYKQEI 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1268 DNLKV---ELDKERKELAQVNSAFEAQTKlsdDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREK 1344
Cdd:TIGR04523 387 KNLESqinDLESKIQNQEKLNQQKDEQIK---KLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTR 463
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1345 ESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLK---VELDKERKELAKVKSVIEAQTK-L 1420
Cdd:TIGR04523 464 ESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTkkiSSLKEKIEKLESEKKEKESKISdL 543
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1421 SDDLQRQKESAQQlvDNLKMELDKERKELAQVKSAIgaqtklsDDLECQKESVQQLVDNLKVELEKERKELAKvnsafea 1500
Cdd:TIGR04523 544 EDELNKDDFELKK--ENLEKEIDEKNKEIEELKQTQ-------KSLKKKQEEKQELIDQKEKEKKDLIKEIEE------- 607
|
650 660 670 680
....*....|....*....|....*....|....*....|....*
gi 442616328 1501 QTKLSDDLKLQKEDAQREvflvKERLVKEKREFEVKLATLEDIIE 1545
Cdd:TIGR04523 608 KEKKISSLEKELEKAKKE----NEKLSSIIKNIKSKKNKLKQEVK 648
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1169-1694 |
4.46e-14 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 78.14 E-value: 4.46e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1169 SDDLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVK---SV 1245
Cdd:TIGR04523 126 LNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLElllSN 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1246 IEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAF-EAQTKLSDDLQRQKESAQQLVDNLKvELDKERKELA 1324
Cdd:TIGR04523 206 LKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEIsNTQTQLNQLKDEQNKIKKQLSEKQK-ELEQNNKKIK 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1325 QVNSAF-EAQTKLSDdLQREKEsaQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKE 1403
Cdd:TIGR04523 285 ELEKQLnQLKSEISD-LNNQKE--QDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEK 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1404 RKELAKVKSVIEaqtklsdDLQRQKESAQQLVDNLKmeldkerKELAQVKSAIGAQTKLSDDLECQKESVQQLvdnlKVE 1483
Cdd:TIGR04523 362 QRELEEKQNEIE-------KLKKENQSYKQEIKNLE-------SQINDLESKIQNQEKLNQQKDEQIKKLQQE----KEL 423
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1484 LEKERKELAKVNSAFEAQTKlsddlKLQKEDAQREvfLVKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYE 1563
Cdd:TIGR04523 424 LEKEIERLKETIIKNNSEIK-----DLTNQDSVKE--LIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEK 496
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1564 QINKLENRCQE-KDNVKSSQLQVETFKVEclHHQLKSEMATHNSLVEDLNRKLAEKVSKLDFvqSRLMTEIAEHNQVKDQ 1642
Cdd:TIGR04523 497 ELKKLNEEKKElEEKVKDLTKKISSLKEK--IEKLESEKKEKESKISDLEDELNKDDFELKK--ENLEKEIDEKNKEIEE 572
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 442616328 1643 LAQITD--IPKVVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEH 1694
Cdd:TIGR04523 573 LKQTQKslKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKEN 626
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1254-1628 |
1.14e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 77.42 E-value: 1.14e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1254 DDLQREKESAQQlvdnlkvELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQ 1333
Cdd:TIGR02169 166 AEFDRKKEKALE-------ELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQ 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1334 TKlsdDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQlvdnlkveldkerKELAKVKSV 1413
Cdd:TIGR02169 239 KE---AIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVK-------------EKIGELEAE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1414 IE-AQTKLSDDLQRQKESAQQLVdNLKMELDKERKELAQVKSAIGAQTKlsddlecQKESVQQLVDNLKVELEKERKELA 1492
Cdd:TIGR02169 303 IAsLERSIAEKERELEDAEERLA-KLEAEIDKLLAEIEELEREIEEERK-------RRDKLTEEYAELKEELEDLRAELE 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1493 KVNSAFEAQTKLSDDLKLQKEDAQREVFLVK---ERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLE 1569
Cdd:TIGR02169 375 EVDKEFAETRDELKDYREKLEKLKREINELKrelDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQE 454
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 442616328 1570 NrcqekdnvKSSQLQVETFKVECLHHQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSR 1628
Cdd:TIGR02169 455 W--------KLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1026-1636 |
2.65e-13 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 76.03 E-value: 2.65e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1026 ESLLKAQKELDLRAKIIENLE-ASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCdmeAKKNEHLERN 1104
Cdd:pfam12128 251 NTLESAELRLSHLHFGYKSDEtLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAV---AKDRSELEAL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1105 QNQSLTQLKEDA------LENCVLMSTKLEEL--------------QAKLQEGQQLVDSQ-KLELDMNRKELALVKSAYE 1163
Cdd:pfam12128 328 EDQHGAFLDADIetaaadQEQLPSWQSELENLeerlkaltgkhqdvTAKYNRRRSKIKEQnNRDIAGIKDKLAKIREARD 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1164 AQ-TKLSDDLQRQKESGQQLVDNLKVELEKERKELAhvnSAIG------AQTKLSDDLECQKESGQQLVDNLKVELEKER 1236
Cdd:pfam12128 408 RQlAVAEDDLQALESELREQLEAGKLEFNEEEYRLK---SRLGelklrlNQATATPELLLQLENFDERIERAREEQEAAN 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1237 KELAQVKSVIEAQTKLSDD----LQREKESAQQL---VDNLKVELDKE--------RKELAQ--------VNSAFEAQTK 1293
Cdd:pfam12128 485 AEVERLQSELRQARKRRDQaseaLRQASRRLEERqsaLDELELQLFPQagtllhflRKEAPDweqsigkvISPELLHRTD 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1294 LSDDLQRQKESAQQLVDNLKVELDK-ERKELAQVNSAFEAQ-TKLSDDLQREKESAQQLVDNL---KVELDKERKELAQV 1368
Cdd:pfam12128 565 LDPEVWDGSVGGELNLYGVKLDLKRiDVPEWAASEEELRERlDKAEEALQSAREKQAAAEEQLvqaNGELEKASREETFA 644
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1369 KSVIE-----------AQTKLSDDLQRQKESAQQLVDNLKVELDKERKELA-KVKSVIEAQTKLSDDLQRQKESA-QQLV 1435
Cdd:pfam12128 645 RTALKnarldlrrlfdEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDkKHQAWLEEQKEQKREARTEKQAYwQVVE 724
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1436 DNLKMELDKERKELAQVKSAIGAQTKlsddlECQKESVQQL----VDNLKV-ELEKERKEL-AKVNSAFEAQTKLsddlk 1509
Cdd:pfam12128 725 GALDAQLALLKAAIAARRSGAKAELK-----ALETWYKRDLaslgVDPDVIaKLKREIRTLeRKIERIAVRRQEV----- 794
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1510 LQKEDAQREVFLV-KERLVKEKREFEVKLATLED----IIETLEMRCTQMEEERATAYEQINKLEnrcQEKDNVKSSQLQ 1584
Cdd:pfam12128 795 LRYFDWYQETWLQrRPRLATQLSNIERAISELQQqlarLIADTKLRRAKLEMERKASEKQQVRLS---ENLRGLRCEMSK 871
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 442616328 1585 VETFKVECLHHQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEH 1636
Cdd:pfam12128 872 LATLKEDANSEQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEHFKNVIADH 923
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1073-1617 |
3.22e-13 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 75.72 E-value: 3.22e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1073 IAQIKETYEEQIKALQakcdmeakKNEHLE--RNQNQSLTQLKEDALENCVLMST-KLEELQAKLQEGQQLVDSQKLELD 1149
Cdd:COG4913 234 FDDLERAHEALEDARE--------QIELLEpiRELAERYAAARERLAELEYLRAAlRLWFAQRRLELLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1150 MNRKELALVKSAYEAQTKLSDDLQRQK-ESGQQLVDNLKVELEKERKELAHVN----------SAIGAQTKLS-DDLECQ 1217
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIrGNGGDRLEQLEREIERLERELEERErrrarleallAALGLPLPASaEEFAAL 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1218 KESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELA--------------- 1282
Cdd:COG4913 386 RAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAealgldeaelpfvge 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1283 --QVNSAFEA-------------------------------QTKL------------SDDLQRQKESAQQLVDNLKVE-- 1315
Cdd:COG4913 466 liEVRPEEERwrgaiervlggfaltllvppehyaaalrwvnRLHLrgrlvyervrtgLPDPERPRLDPDSLAGKLDFKph 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1316 -----LDKE---RKELAQVNSAFE-----------AQTKLS------DDLQREKE------SAQQLVDNLKVELDKERKE 1364
Cdd:COG4913 546 pfrawLEAElgrRFDYVCVDSPEElrrhpraitraGQVKGNgtrhekDDRRRIRSryvlgfDNRAKLAALEAELAELEEE 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1365 LAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKE--RKELAKVKSVIEAQTKLSDD---LQRQKESAQQLVDNLK 1439
Cdd:COG4913 626 LAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVAsaEREIAELEAELERLDASSDDlaaLEEQLEELEAELEELE 705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1440 MELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVD-NLKVELEKERKELAkvnsAFEAQTKLSDDLKLQKEDAQRE 1518
Cdd:COG4913 706 EELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARlELRALLEERFAAAL----GDAVERELRENLEERIDALRAR 781
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1519 VFLVKERLVKE----KREFEVKL----ATLEDIIETLEMrCTQMEEERATAYEQ-INKLENRCQEKDnvkssqlqvetfk 1589
Cdd:COG4913 782 LNRAEEELERAmrafNREWPAETadldADLESLPEYLAL-LDRLEEDGLPEYEErFKELLNENSIEF------------- 847
|
650 660
....*....|....*....|....*...
gi 442616328 1590 VECLHHQLKSEMATHNSLVEDLNRKLAE 1617
Cdd:COG4913 848 VADLLSKLRRAIREIKERIDPLNDSLKR 875
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1030-1905 |
7.05e-13 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 74.77 E-value: 7.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1030 KAQKELDLRAKIIE--NLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKC---DMEAKKNEHLERN 1104
Cdd:pfam15921 56 KYEVELDSPRKIIAypGKEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLqemQMERDAMADIRRR 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1105 QNQSLTQLKeDALENCVlmstklEELQAKLQEGQQLVDSQKLELDMNRK-ELALVKSAYEAQTKLSDdlqRQKESGQQLv 1183
Cdd:pfam15921 136 ESQSQEDLR-NQLQNTV------HELEAAKCLKEDMLEDSNTQIEQLRKmMLSHEGVLQEIRSILVD---FEEASGKKI- 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1184 dnlkveLEKERKELAHVNSAIGAQTKLSDDLECQkesgqqlVDNLKVELEKERKELAQVKSviEAQTKLSDDLQREKESA 1263
Cdd:pfam15921 205 ------YEHDSMSTMHFRSLGSAISKILRELDTE-------ISYLKGRIFPVEDQLEALKS--ESQNKIELLLQQHQDRI 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1264 QQLVDNLKVEL----DKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEaqtklsdD 1339
Cdd:pfam15921 270 EQLISEHEVEItgltEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYE-------D 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1340 LQREKESAQQLVDNLKVELDKERKELAQvksvieAQTKLSDDLQRqkesaqqlvdnLKVELDKERKELAKVKsviEAQTK 1419
Cdd:pfam15921 343 KIEELEKQLVLANSELTEARTERDQFSQ------ESGNLDDQLQK-----------LLADLHKREKELSLEK---EQNKR 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1420 LSDdlqrQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKlsddlECQKESVQQLvdnlkVELEKERKELAKVNSafe 1499
Cdd:pfam15921 403 LWD----RDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKS-----ECQGQMERQM-----AAIQGKNESLEKVSS--- 465
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1500 aqtklsddLKLQKEDAQREVFLVKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNVK 1579
Cdd:pfam15921 466 --------LTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLK 537
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1580 SSQLQVETFKVEClhHQLKSEMATHNSLVEDLnRKLAEKVSKLDFVQSR----LMTEIAE-HNQVKDQLAQITDI----- 1649
Cdd:pfam15921 538 NEGDHLRNVQTEC--EALKLQMAEKDKVIEIL-RQQIENMTQLVGQHGRtagaMQVEKAQlEKEINDRRLELQEFkilkd 614
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1650 ---PKVVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDnarlehgaQILRMEETAREVGNKNAELCELIEF-YRNR 1725
Cdd:pfam15921 615 kkdAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERD--------QLLNEVKTSRNELNSLSEDYEVLKRnFRNK 686
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1726 VEALE------RLLLASNQ-ELEEL-NSIQSNQAEGvrdlGDTYSAAEGRQTESDQDKERYQKLALDCKILQAKYRDAKD 1797
Cdd:pfam15921 687 SEEMEtttnklKMQLKSAQsELEQTrNTLKSMEGSD----GHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANK 762
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1798 E---IKRCEKKIKDQRLEMEGKLEKMKNKMRSLYTAEvTRMKEKqerdAAKSASELEALTAQNAKYEEHTRKLSNQIVRL 1874
Cdd:pfam15921 763 EkhfLKEEKNKLSQELSTVATEKNKMAGELEVLRSQE-RRLKEK----VANMEVALDKASLQFAECQDIIQRQEQESVRL 837
|
890 900 910
....*....|....*....|....*....|....*
gi 442616328 1875 NEK----ILEQQKQHAIISTNLRHLQMQPISETKP 1905
Cdd:pfam15921 838 KLQhtldVKELQGPGYTSNSSMKPRLLQPASFTRT 872
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1032-1867 |
1.30e-12 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 73.93 E-value: 1.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1032 QKELDLRAKII--ENLEASERNLSM-KLCELKDLKNKLKSSDEKIAQIKEtYEEQIKALQAKCDMEAKKNEHLE------ 1102
Cdd:TIGR00606 217 EKACEIRDQITskEAQLESSREIVKsYENELDPLKNRLKEIEHNLSKIMK-LDNEIKALKSRKKQMEKDNSELElkmekv 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1103 -RNQNQSLTQLKEDALENCVLMSTKLEELQ---AKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTkLSDDLQRQKES 1178
Cdd:TIGR00606 296 fQGTDEQLNDLYHNHQRTVREKERELVDCQrelEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHI-RARDSLIQSLA 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1179 GQQLVDNLK------------VELEKERKE---------LAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERK 1237
Cdd:TIGR00606 375 TRLELDGFErgpfserqiknfHTLVIERQEdeaktaaqlCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQE 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1238 ELAQVKSVIEAQTKLSDDLQREKEsaqqlvdnlkvELDKERKELAQVNSAFEAQTKLSDDLQRQKESAqqlvdNLKVELD 1317
Cdd:TIGR00606 455 ELKFVIKELQQLEGSSDRILELDQ-----------ELRKAERELSKAEKNSLTETLKKEVKSLQNEKA-----DLDRKLR 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1318 KERKELAQVNSAFEAQTKLsDDLQREKESAQQLVDNLKvelDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNL- 1396
Cdd:TIGR00606 519 KLDQEMEQLNHHTTTRTQM-EMLTKDKMDKDEQIRKIK---SRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLa 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1397 KVELDKERKELAK------VKSVIEAQTKLSDDLQR--QKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLEC 1468
Cdd:TIGR00606 595 KLNKELASLEQNKnhinneLESKEEQLSSYEDKLFDvcGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTD 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1469 QKESVQQLVDnlkvELEKERKELAKVNSAFEAQTKLSDD------LKLQKEDAQREVFLVKERLvkEKREFEVKLATLED 1542
Cdd:TIGR00606 675 ENQSCCPVCQ----RVFQTEAELQEFISDLQSKLRLAPDklksteSELKKKEKRRDEMLGLAPG--RQSIIDLKEKEIPE 748
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1543 IIETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKS--------SQLQVETFKVECLHHQLKSEMATHNSL--VEDLN 1612
Cdd:TIGR00606 749 LRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVcltdvtimERFQMELKDVERKIAQQAAKLQGSDLDrtVQQVN 828
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1613 RKLAEKVSKLDFVQSR---LMTEIAEHNQVKDQLAQITDIPKVVELQhrLEAETAEREEAQNKLAVVTGRLDEITRELDN 1689
Cdd:TIGR00606 829 QEKQEKQHELDTVVSKielNRKLIQDQQEQIQHLKSKTNELKSEKLQ--IGTNLQRRQQFEEQLVELSTEVQSLIREIKD 906
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1690 ARLEHG--AQILRMEET-------AREVGNKNAEL--------CELIEFYRNRVE-----ALERLLLASNQELEELNSiQ 1747
Cdd:TIGR00606 907 AKEQDSplETFLEKDQQekeelisSKETSNKKAQDkvndikekVKNIHGYMKDIEnkiqdGKDDYLKQKETELNTVNA-Q 985
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1748 SNQAEGVRDLGDTYSAAEGRQTESDQDKERYQKLALDCKILQAKYRDAKDEIKRCEKKI-KDQRLEMEGKLEKMKNKMRS 1826
Cdd:TIGR00606 986 LEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMgQMQVLQMKQEHQKLEENIDL 1065
|
890 900 910 920
....*....|....*....|....*....|....*....|.
gi 442616328 1827 LYTAEVTRMKEKQERDAAKSASELEALTAQNAKYEEHTRKL 1867
Cdd:TIGR00606 1066 IKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREM 1106
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
942-1752 |
1.42e-12 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 73.85 E-value: 1.42e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 942 LKMYDQMEVRYEESSSLVEKLTESQAKLEmqvaELQVELENKDTNQHSGALIKQLNDTIQNLEKVNAKLSEDNTVSHtvh 1021
Cdd:pfam02463 202 LKEQAKKALEYYQLKEKLELEEEYLLYLD----YLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKEN--- 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1022 sKLNESLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHL 1101
Cdd:pfam02463 275 -KEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREA 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1102 ERNQNQSLTQLKEDALEncvlmstKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSddlqRQKESGQQ 1181
Cdd:pfam02463 354 EEEEEEELEKLQEKLEQ-------LEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELA----RQLEDLLK 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1182 LVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKvelEKERKELAQVKSVIEAQTKLSDDLQREKE 1261
Cdd:pfam02463 423 EEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKS---EDLLKETQLVKLQEQLELLLSRQKLEERS 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1262 SAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLV-DNLKVELDKERKELAQVNSAFEAQTKLS-DD 1339
Cdd:pfam02463 500 QKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTaVIVEVSATADEVEERQKLVRALTELPLGaRK 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1340 LQREKESAQ-QLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQT 1418
Cdd:pfam02463 580 LRLLIPKLKlPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLA 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1419 KLSDDLQRQKESAQQLVDNL------KMELDKERKELAQVK------SAIGAQTKLSDDLECQKESVQQLVDNLKVELEK 1486
Cdd:pfam02463 660 EKSEVKASLSELTKELLEIQelqekaESELAKEEILRRQLEikkkeqREKEELKKLKLEAEELLADRVQEAQDKINEELK 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1487 ERKELAKVNSAFEAQTKLSDDLKLQKEDA--QREVFLVKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQ 1564
Cdd:pfam02463 740 LLKQKIDEEEEEEEKSRLKKEEKEEEKSElsLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEE 819
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1565 INKLENRCQEKDNVKSSQLQVE--TFKVECLHHQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQ 1642
Cdd:pfam02463 820 EQLLIEQEEKIKEEELEELALElkEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEK 899
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1643 LAQITDIPKvveLQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELIEFY 1722
Cdd:pfam02463 900 KELEEESQK---LNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVN 976
|
810 820 830
....*....|....*....|....*....|
gi 442616328 1723 RNRVEALERLLLASNQELEELNSIQSNQAE 1752
Cdd:pfam02463 977 LMAIEEFEEKEERYNKDELEKERLEEEKKK 1006
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
797-1588 |
1.54e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.56 E-value: 1.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 797 IEKRFENIEMLIEGQLLSADDLKRELDDLRSKNEELAKQningiikrnkfitslevntekvkqyITDL-EEEAFKRKQKV 875
Cdd:TIGR02169 242 IERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKK-------------------------IKDLgEEEQLRVKEKI 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 876 VQLENTLSKEQSNAKEMAQRLDIAQQEIKDYHVEairfintiRDRLQQDFngvntpqqlgtcmteflkmyDQMEVRYEES 955
Cdd:TIGR02169 297 GELEAEIASLERSIAEKERELEDAEERLAKLEAE--------IDKLLAEI--------------------EELEREIEEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 956 SSLVEKLTESQAKLEMQVAELQVELENKDTNqhSGALIKQLNDTIQNLEKVNAKLSEDNTvshTVHSKLNESLLKAQKEL 1035
Cdd:TIGR02169 349 RKRRDKLTEEYAELKEELEDLRAELEEVDKE--FAETRDELKDYREKLEKLKREINELKR---ELDRLQEELQRLSEELA 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1036 DLRAKI---IENLEASERNLSMKLCELKDLKNKLKSsdekIAQIKETYEEQIKALQAKCDMEAKKNEHLERNQNQSLTQL 1112
Cdd:TIGR02169 424 DLNAAIagiEAKINELEEEKEDKALEIKKQEWKLEQ----LAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQA 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1113 KedALENCVLMSTKLEELqakLQEGQQLVDSQKLELDMNRKELAL-VKSAYEAQTK---LSDD---------LQRQKESG 1179
Cdd:TIGR02169 500 R--ASEERVRGGRAVEEV---LKASIQGVHGTVAQLGSVGERYATaIEVAAGNRLNnvvVEDDavakeaielLKRRKAGR 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1180 QQLVDNLKVELEKERKELAHVNSAIGAQTKLSD-DLECQK---------------ESGQQLVDNLK-VELE--------- 1233
Cdd:TIGR02169 575 ATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEfDPKYEPafkyvfgdtlvvediEAARRLMGKYRmVTLEgelfeksga 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1234 ----------------KERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKE-------RKELAQVNSAFEA 1290
Cdd:TIGR02169 655 mtggsraprggilfsrSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDAsrkigeiEKEIEQLEQEEEK 734
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1291 QTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEA-QTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVK 1369
Cdd:TIGR02169 735 LKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKlEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARL 814
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1370 SVIEAQTKlsdDLQRQKESAQQLVDNLKVELDkerkELAKVKSVIEAQTklsDDLQRQKESAQQLVDNLKMELDKERKEL 1449
Cdd:TIGR02169 815 REIEQKLN---RLTLEKEYLEKEIQELQEQRI----DLKEQIKSIEKEI---ENLNGKKEELEEELEELEAALRDLESRL 884
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1450 AQVKSAIgaqtklsDDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQ----TKLSDDLKLQKEDAQREvfLVKER 1525
Cdd:TIGR02169 885 GDLKKER-------DELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALeeelSEIEDPKGEDEEIPEEE--LSLED 955
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1526 LVKEKREFEVKLATLEDI-------IETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKSSQLqVETF 1588
Cdd:TIGR02169 956 VQAELQRVEEEIRALEPVnmlaiqeYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVF-MEAF 1024
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1205-1769 |
2.95e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 72.38 E-value: 2.95e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1205 GAQTKLSDDLEcQKESgQQLVDNLKvELEKERKELAQVKSVIEAQ--------TKLSDDLQREKESAQQLvDNLKVELDK 1276
Cdd:PRK02224 187 GSLDQLKAQIE-EKEE-KDLHERLN-GLESELAELDEEIERYEEQreqaretrDEADEVLEEHEERREEL-ETLEAEIED 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1277 ERKELAQvnsAFEAQTKLSDDLQRQKESAQQLVDnlkvELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQlvdnlkv 1356
Cdd:PRK02224 263 LRETIAE---TEREREELAEEVRDLRERLEELEE----ERDDLLAEAGLDDADAEAVEARREELEDRDEELRD------- 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1357 ELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLVD 1436
Cdd:PRK02224 329 RLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLG 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1437 NLKMELDKERKELAQVKSAIgaqTKLSDDLECQKESV---QQLVDNLKV-ELEKERKELAKVNSAFEAQTKLsDDLKLQK 1512
Cdd:PRK02224 409 NAEDFLEELREERDELRERE---AELEATLRTARERVeeaEALLEAGKCpECGQPVEGSPHVETIEEDRERV-EELEAEL 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1513 EDAQREVFLVKERLvkekrEFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNvKSSQLQVETFKVEC 1592
Cdd:PRK02224 485 EDLEEEVEEVEERL-----ERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRE-RAAELEAEAEEKRE 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1593 LHHQLKSEMATHNSLVEDLNRKLAEkvskldfvqsrLMTEIAEHNQVKDQLAQITDI-PKVVELQHRLEAETAEREEAQN 1671
Cdd:PRK02224 559 AAAEAEEEAEEAREEVAELNSKLAE-----------LKERIESLERIRTLLAAIADAeDEIERLREKREALAELNDERRE 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1672 KLAVVTGRLDEITRELDNARLEHG-AQILRMEETAREVGNKNAELCELIEFYRNRVEALERLLlasnQELEELNSIQSNQ 1750
Cdd:PRK02224 628 RLAEKRERKRELEAEFDEARIEEArEDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENEL----EELEELRERREAL 703
|
570
....*....|....*....
gi 442616328 1751 AEGVRDLGDTYSAAEGRQT 1769
Cdd:PRK02224 704 ENRVEALEALYDEAEELES 722
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
576-1365 |
4.38e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.01 E-value: 4.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 576 LELDNERLNDKCAELKSIIDRGDQHLADINLQLIEKEKQ--------------IKDVGAEIQELRKRNINLENMLSQIAD 641
Cdd:TIGR02168 244 LQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEieelqkelyalaneISRLEQQKQILRERLANLERQLEELEA 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 642 KEASAASHAQHLKQCGELLRAKYEVCRNELIAKNAAQDELVrmmmvpdgETLNGRVRQLIDLEMMHDEHNKMYAQMLKQL 721
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE--------AELEELESRLEELEEQLETLRSKVAQLELQI 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 722 NELSAKhdnmthshldfVKRTEIELETKNAQImafdehnnhfDRFLTRIFTLLR--SRNCPKSTTMGSATNFLESMHIEK 799
Cdd:TIGR02168 396 ASLNNE-----------IERLEARLERLEDRR----------ERLQQEIEELLKklEEAELKELQAELEELEEELEELQE 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 800 RFENIEMLIEGQLLSADDLKRELDDLRSKNEELAKQningiikrnkfITSLEVNTEKVKQYiTDLEEEAFKRKQKVVQLE 879
Cdd:TIGR02168 455 ELERLEEALEELREELEEAEQALDAAERELAQLQAR-----------LDSLERLQENLEGF-SEGVKALLKNQSGLSGIL 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 880 NTLSKEQSNAKEMAQRLDIAQQEIKDYHVEairfintirDRLQQDFNGVNTPQQLGTCMTEFLKMYDQMEVRYEESSSLV 959
Cdd:TIGR02168 523 GVLSELISVDEGYEAAIEAALGGRLQAVVV---------ENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREI 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 960 EKLTESQAKLEMQVAELQVELENKDTNQHSGALIKqlnDTIQN-LEKVNAKLSEDNTVS---HTVH---------SKLNE 1026
Cdd:TIGR02168 594 LKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVV---DDLDNaLELAKKLRPGYRIVTldgDLVRpggvitggsAKTNS 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1027 SLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLER--- 1103
Cdd:TIGR02168 671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEEria 750
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1104 ----------NQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQ 1173
Cdd:TIGR02168 751 qlskelteleAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLE 830
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1174 RQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLS 1253
Cdd:TIGR02168 831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1254 DDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKE-----SAQQLVDNLKvELDKERKELAQVNS 1328
Cdd:TIGR02168 911 SELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALEnkiedDEEEARRRLK-RLENKIKELGPVNL 989
|
810 820 830 840
....*....|....*....|....*....|....*....|....
gi 442616328 1329 A----FEAQTKLSDDLQREKESAQQLVDNLK---VELDKERKEL 1365
Cdd:TIGR02168 990 AaieeYEELKERYDFLTAQKEDLTEAKETLEeaiEEIDREARER 1033
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
949-1647 |
4.43e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.02 E-value: 4.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 949 EVRYEESSSLVEKLTESQAKLEMQVAELQVELENKDtnqhsgALIKQLNDTIQNLEKVNAKLSEDntvshtVHSKLNESL 1028
Cdd:TIGR02169 222 EYEGYELLKEKEALERQKEAIERQLASLEEELEKLT------EEISELEKRLEEIEQLLEELNKK------IKDLGEEEQ 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1029 LKAQKEL-DLRAKIienlEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAkcdmEAKKNEHLErnqnq 1107
Cdd:TIGR02169 290 LRVKEKIgELEAEI----ASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEE----ERKRRDKLT----- 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1108 slTQLKEDALENCVLMStKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAyeaQTKLSDDLQRQKESGQQLVDNLK 1187
Cdd:TIGR02169 357 --EEYAELKEELEDLRA-ELEEVDKEFAETRDELKDYREKLEKLKREINELKRE---LDRLQEELQRLSEELADLNAAIA 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1188 V------ELEKERKEL-AHVNSAIGAQTKLSDDLECQKESGQQLVDNLKvELEKERKELAQVKSVIEAQTKLSDDLQREK 1260
Cdd:TIGR02169 431 GieakinELEEEKEDKaLEIKKQEWKLEQLAADLSKYEQELYDLKEEYD-RVEKELSKLQRELAEAEAQARASEERVRGG 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1261 ESAQQLV---------------------------------DNLKVELD----------KERK------------------ 1279
Cdd:TIGR02169 510 RAVEEVLkasiqgvhgtvaqlgsvgeryataievaagnrlNNVVVEDDavakeaiellKRRKagratflplnkmrderrd 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1280 --------------ELAQVNSAFEA-------QTKLSDDLqrqkESAQQLVDNLK-VELD-------------------- 1317
Cdd:TIGR02169 590 lsilsedgvigfavDLVEFDPKYEPafkyvfgDTLVVEDI----EAARRLMGKYRmVTLEgelfeksgamtggsraprgg 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1318 -----KERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKE-------RKELAQVKSVIEAQTKLSDDLQRQ 1385
Cdd:TIGR02169 666 ilfsrSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDAsrkigeiEKEIEQLEQEEEKLKERLEELEED 745
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1386 KESAQQLVDNLKVELDKERKELAKVKSVIEA-QTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTK--- 1461
Cdd:TIGR02169 746 LSSLEQEIENVKSELKELEARIEELEEDLHKlEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNrlt 825
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1462 ---------------LSDDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEaqtklsdDLKLQKEDAQREVflvkERL 1526
Cdd:TIGR02169 826 lekeylekeiqelqeQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR-------DLESRLGDLKKER----DEL 894
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1527 VKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKSSQLQVETFKVECLhhQLKSEMAThns 1606
Cdd:TIGR02169 895 EAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQ--RVEEEIRA--- 969
|
810 820 830 840
....*....|....*....|....*....|....*....|....*
gi 442616328 1607 lVEDLNRK----LAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQIT 1647
Cdd:TIGR02169 970 -LEPVNMLaiqeYEEVLKRLDELKEKRAKLEEERKAILERIEEYE 1013
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
946-1511 |
6.18e-12 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 71.69 E-value: 6.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 946 DQMEVRYEESSSLVEKLTES-QAKLEMQVAELQVELENkdTNQHSGALIKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKL 1024
Cdd:pfam15921 245 DQLEALKSESQNKIELLLQQhQDRIEQLISEHEVEITG--LTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDL 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1025 NESLLKAQKELDLRAKIIEN-LEASERNLSMKLCELKDLKnklkSSDEKIAQIKETYEEQIKALQAkcDMEAKKNE-HLE 1102
Cdd:pfam15921 323 ESTVSQLRSELREAKRMYEDkIEELEKQLVLANSELTEAR----TERDQFSQESGNLDDQLQKLLA--DLHKREKElSLE 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1103 RNQNQSL---------------TQLKEDALENC---VLMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEA 1164
Cdd:pfam15921 397 KEQNKRLwdrdtgnsitidhlrRELDDRNMEVQrleALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEM 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1165 QTKLSDDLQRQK---ESGQQLVDNLKVELEKERKELAHVNSAIgaqTKLSD--DLECQ-----KESGQQL------VDNL 1228
Cdd:pfam15921 477 LRKVVEELTAKKmtlESSERTVSDLTASLQEKERAIEATNAEI---TKLRSrvDLKLQelqhlKNEGDHLrnvqteCEAL 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1229 KVELEKERKELAQVKSVIEAQTKL-------SDDLQREKESAQQLVDNLKVELdKERKELAQVNSA--FEAQTKLSD-DL 1298
Cdd:pfam15921 554 KLQMAEKDKVIEILRQQIENMTQLvgqhgrtAGAMQVEKAQLEKEINDRRLEL-QEFKILKDKKDAkiRELEARVSDlEL 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1299 QRQK------------ESAQQLVDNLKVELDKERKELAQVNSAFEAqtkLSDDLQREKESAQQLVDNLKVELDKERKELA 1366
Cdd:pfam15921 633 EKVKlvnagserlravKDIKQERDQLLNEVKTSRNELNSLSEDYEV---LKRNFRNKSEEMETTTNKLKMQLKSAQSELE 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1367 QVKSVIEAQ-------TKLSDDLQRQKESAQQLVDNLKveldkerkelAKVKSVIEAQTKLSDDLQRQKESaqqlvdnlK 1439
Cdd:pfam15921 710 QTRNTLKSMegsdghaMKVAMGMQKQITAKRGQIDALQ----------SKIQFLEEAMTNANKEKHFLKEE--------K 771
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442616328 1440 MELDKERKELAQVKSAIGAQTKLsddLECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQ 1511
Cdd:pfam15921 772 NKLSQELSTVATEKNKMAGELEV---LRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQ 840
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
964-1519 |
8.72e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 70.86 E-value: 8.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 964 ESQAKLEMQVAELQvELENKDTNqhSGALIKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNESLLKAQKELDLRAKIIE 1043
Cdd:PRK03918 145 ESREKVVRQILGLD-DYENAYKN--LGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELRE 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1044 NLEASERNLSmKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLERNQNQsLTQLKEDALENCVL- 1122
Cdd:PRK03918 222 ELEKLEKEVK-ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKE-LKELKEKAEEYIKLs 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1123 -------------------MSTKLEELQAKLQEGQQLVdSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQL- 1182
Cdd:PRK03918 300 efyeeyldelreiekrlsrLEEEINGIEERIKELEEKE-ERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLk 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1183 -----------------VDNLKVELEKERKEL----AHVNSAIGAQTKLSDDLECQKES----GQQLVDNLKVEL-EKER 1236
Cdd:PRK03918 379 krltgltpeklekeleeLEKAKEEIEEEISKItariGELKKEIKELKKAIEELKKAKGKcpvcGRELTEEHRKELlEEYT 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1237 KELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKvELDKERKELAQVNsafEAQTKLSDDLQRQKESAQQLVDNLKVEL 1316
Cdd:PRK03918 459 AELKRIEKELKEIEEKERKLRKELRELEKVLKKES-ELIKLKELAEQLK---ELEEKLKKYNLEELEKKAEEYEKLKEKL 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1317 DKERKELAQVNSAFEAQtklsDDLQREKESAQQLVDNLKVELDKERKELAQV--KSVIEAQTKLSD------------DL 1382
Cdd:PRK03918 535 IKLKGEIKSLKKELEKL----EELKKKLAELEKKLDELEEELAELLKELEELgfESVEELEERLKElepfyneylelkDA 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1383 QRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQrqKESAQQLVDNLKMELDKERKELAQVKSAIgaqtkl 1462
Cdd:PRK03918 611 EKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELE--KKYSEEEYEELREEYLELSRELAGLRAEL------ 682
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 442616328 1463 sDDLECQKESVQQLVDNLKVELE---KERKELAKVNSAFEAQTKLSDDLK----LQKEDAQREV 1519
Cdd:PRK03918 683 -EELEKRREEIKKTLEKLKEELEereKAKKELEKLEKALERVEELREKVKkykaLLKERALSKV 745
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1231-1892 |
1.71e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 70.39 E-value: 1.71e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1231 ELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQ-VNSAFEAQTKLSDDLQRQKESAQQLV 1309
Cdd:pfam02463 174 ALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLlYLDYLKLNEERIDLLQELLRDEQEEI 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1310 DNLKVELDKERKELAQVNSafeaqtklsddLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDD----LQRQ 1385
Cdd:pfam02463 254 ESSKQEIEKEEEKLAQVLK-----------ENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEklkeSEKE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1386 KESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDD 1465
Cdd:pfam02463 323 KKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1466 LECQKESVQQLVDNLKVELEKERKELAKvnsafEAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREFEVKL-ATLEDII 1544
Cdd:pfam02463 403 EEKEAQLLLELARQLEDLLKEEKKEELE-----ILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKsEDLLKET 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1545 ETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKSSQLQVETFKVECLHHQLKSEMATHNSLVEDLNR----KLAEKVS 1620
Cdd:pfam02463 478 QLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAIStaviVEVSATA 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1621 KLDFVQSRLMTEIAEHNQVKDQLAQITDIPKVVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQILR 1700
Cdd:pfam02463 558 DEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKL 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1701 ME-ETAREVGNKNAELCELIEFYRNRVEALERLL---LASNQELEELNSIQSNQAEGVRDLGDTYSAAEGRQTESDQDKE 1776
Cdd:pfam02463 638 KEsAKAKESGLRKGVSLEEGLAEKSEVKASLSELtkeLLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKL 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1777 RYQKLALDCKILQ--------AKYRDAKDEIKRCEKKIKDQRLEMEGKLEKMKNKMRSLYTAEVTRMKEKQERDA----A 1844
Cdd:pfam02463 718 EAEELLADRVQEAqdkineelKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKeeklK 797
|
650 660 670 680
....*....|....*....|....*....|....*....|....*...
gi 442616328 1845 KSASELEALTAQNAKYEEHTRKLSNQIVRLNEKILEQQKQHAIISTNL 1892
Cdd:pfam02463 798 AQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEE 845
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1240-1461 |
2.65e-11 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 67.93 E-value: 2.65e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1240 AQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAqvnsafEAQTKLsDDLQRQKESAQQLVDNLKVELDKE 1319
Cdd:COG3883 12 AFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYN------ELQAEL-EALQAEIDKLQAEIAEAEAEIEER 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1320 RKELAQVNSAFEAQTKLSDDLQR--EKESAQQLVDNLKVeldkerkelaqVKSVIEAQTKLSDDLQRQKESaqqlVDNLK 1397
Cdd:COG3883 85 REELGERARALYRSGGSVSYLDVllGSESFSDFLDRLSA-----------LSKIADADADLLEELKADKAE----LEAKK 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 442616328 1398 VELDKERKELAKVKSVIEAQTKlsdDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTK 1461
Cdd:COG3883 150 AELEAKLAELEALKAELEAAKA---ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEA 210
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1123-1897 |
3.04e-11 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 69.43 E-value: 3.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1123 MSTKLEELQaKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELahvNS 1202
Cdd:pfam01576 7 MQAKEEELQ-KVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHEL---ES 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1203 AIGAQTKLSDDLECQKESGQQLVDNLKVELEKE---RKELAQVKSVIEAQTK-LSDDLQrekesaqqLVDNLKVELDKER 1278
Cdd:pfam01576 83 RLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEeaaRQKLQLEKVTTEAKIKkLEEDIL--------LLEDQNSKLSKER 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1279 KELAQVNSAFEAQ----TKLSDDLQRQKESAQQLVDNLKVELDKE---RKELAQVNSAFEAQtklSDDLQREKESAQQLV 1351
Cdd:pfam01576 155 KLLEERISEFTSNlaeeEEKAKSLSKLKNKHEAMISDLEERLKKEekgRQELEKAKRKLEGE---STDLQEQIAELQAQI 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1352 DNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVksviEAQTK-LSDDLQRQKES 1430
Cdd:pfam01576 232 AELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKA----EKQRRdLGEELEALKTE 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1431 AQQLVD--NLKMELDKER-KELAQVKSAIGAQTKLSD-DLECQKESVQQLVDNLKVELEKERKelAKVNSAFEAQTKLSD 1506
Cdd:pfam01576 308 LEDTLDttAAQQELRSKReQEVTELKKALEEETRSHEaQLQEMRQKHTQALEELTEQLEQAKR--NKANLEKAKQALESE 385
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1507 DLKLQKEdaqrevflvKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENrcqEKDNVKSSQLQVE 1586
Cdd:pfam01576 386 NAELQAE---------LRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQS---ELESVSSLLNEAE 453
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1587 TfkvecLHHQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDIPKVVELQhrLEAETAER 1666
Cdd:pfam01576 454 G-----KNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQ--LSTLQAQL 526
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1667 EEAQNKLAVVTGRLDEI-------TRELDNARL---EHGAQILRMEETAREVGNKNAELCELIEFYRNRVEALERLLLAS 1736
Cdd:pfam01576 527 SDMKKKLEEDAGTLEALeegkkrlQRELEALTQqleEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKF 606
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1737 NQELEELNSIQSNQAEGvRDLGDtysaAEGRQTES---------DQDKERYQKLALDCKILQAKYRD---AKDEIKRCEK 1804
Cdd:pfam01576 607 DQMLAEEKAISARYAEE-RDRAE----AEAREKETralslaralEEALEAKEELERTNKQLRAEMEDlvsSKDDVGKNVH 681
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1805 KIKDQRLEMEGKLEKMKNKMRSL----YTAEVTRMKEKQERDAAKSASELEaLTAQNAKYEEHTRKLSNQIVRLNEKILE 1880
Cdd:pfam01576 682 ELERSKRALEQQVEEMKTQLEELedelQATEDAKLRLEVNMQALKAQFERD-LQARDEQGEEKRRQLVKQVRELEAELED 760
|
810
....*....|....*..
gi 442616328 1881 QQKQHAIISTNLRHLQM 1897
Cdd:pfam01576 761 ERKQRAQAVAAKKKLEL 777
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
947-1881 |
3.42e-11 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 69.05 E-value: 3.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 947 QMEVRYEESSSLVEKLTESQAKLEMQVAELQVELENKDTNQH--------SGALIKQLNDTIQNLEKVNAKLSEDNTVSH 1018
Cdd:pfam01576 79 ELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQklqlekvtTEAKIKKLEEDILLLEDQNSKLSKERKLLE 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1019 T----VHSKLNESLLKAQK-------------ELDLRAKIIE----NLEASERNLSMKLCELKDLKNKLKSSDEKIAQIK 1077
Cdd:pfam01576 159 EriseFTSNLAEEEEKAKSlsklknkheamisDLEERLKKEEkgrqELEKAKRKLEGESTDLQEQIAELQAQIAELRAQL 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1078 ETYEEQIKALQAKCDME-AKKNEHLERN---QNQsLTQLKEDaLENCVLMSTKL--------EELQAKLQEGQQLVDSQK 1145
Cdd:pfam01576 239 AKKEEELQAALARLEEEtAQKNNALKKIrelEAQ-ISELQED-LESERAARNKAekqrrdlgEELEALKTELEDTLDTTA 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1146 LELDMNRK---ELALVKSAYEAQTKLSD-DLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESG 1221
Cdd:pfam01576 317 AQQELRSKreqEVTELKKALEEETRSHEaQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTL 396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1222 QQLvdnlKVELEKERKELAQvkSVIEAQTKLSDDlQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQ 1301
Cdd:pfam01576 397 QQA----KQDSEHKRKKLEG--QLQELQARLSES-ERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQ 469
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1302 KESAQQLvdnLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQL---VDNLKVELDKERKELAQVKSVIEAQTKL 1378
Cdd:pfam01576 470 LQDTQEL---LQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVerqLSTLQAQLSDMKKKLEEDAGTLEALEEG 546
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1379 SDDLQRQKESAQQlvdnlkvelDKERKELAKvksvieaqtklsDDLQRQKESAQQLVDNLKMELDKERkelaQVKSAIGA 1458
Cdd:pfam01576 547 KKRLQRELEALTQ---------QLEEKAAAY------------DKLEKTKNRLQQELDDLLVDLDHQR----QLVSNLEK 601
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1459 QTKLSDDL--ECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLsdDLKLQKEDAQREVFLVKERLVKEKREFEVK 1536
Cdd:pfam01576 602 KQKKFDQMlaEEKAISARYAEERDRAEAEAREKETRALSLARALEEAL--EAKEELERTNKQLRAEMEDLVSSKDDVGKN 679
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1537 LATLEDIIETLEmrcTQMEEERatayEQINKLENRCQEKDNVKssqLQVETfKVECLHHQLKSEMATHNSLVEDLNRKLA 1616
Cdd:pfam01576 680 VHELERSKRALE---QQVEEMK----TQLEELEDELQATEDAK---LRLEV-NMQALKAQFERDLQARDEQGEEKRRQLV 748
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1617 EKVSKLDfvqsrlmteiAEHNQVKDQLAQITDIPKVVE-----LQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNAR 1691
Cdd:pfam01576 749 KQVRELE----------AELEDERKQRAQAVAAKKKLEldlkeLEAQIDAANKGREEAVKQLKKLQAQMKDLQRELEEAR 818
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1692 LEHGAQILRMEETAREVGNKNAELCELIEfyrnRVEALERLLLASNQELEELNSIQSNQAEGVRDLGDTYSAAEGR---- 1767
Cdd:pfam01576 819 ASRDEILAQSKESEKKLKNLEAELLQLQE----DLAASERARRQAQQERDELADEIASGASGKSALQDEKRRLEARiaql 894
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1768 -------QTESDQDKERYQKLALDCKILQAKY---RDAKDEIKRCEKKIKDQRLEMEGKLEKMKNKMRSLYTAEVTRMKe 1837
Cdd:pfam01576 895 eeeleeeQSNTELLNDRLRKSTLQVEQLTTELaaeRSTSQKSESARQQLERQNKELKAKLQEMEGTVKSKFKSSIAALE- 973
|
970 980 990 1000
....*....|....*....|....*....|....*....|....
gi 442616328 1838 kqerdaAKSASELEALTAqnakyEEHTRKLSNQIVRLNEKILEQ 1881
Cdd:pfam01576 974 ------AKIAQLEEQLEQ-----ESRERQAANKLVRRTEKKLKE 1006
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
951-1598 |
3.59e-11 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 69.23 E-value: 3.59e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 951 RYEESSSLVEKLTESqAKLEMQVAELQVELENKDTNQhsgaLIKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNEsLLK 1030
Cdd:TIGR00618 177 QYTQLALMEFAKKKS-LHGKAELLTLRSQLLTLCTPC----MPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQ-KRE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1031 AQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSS---------DEKIAQIKETYEEQIKALQAKCDMEAKKNEHL 1101
Cdd:TIGR00618 251 AQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRArkaaplaahIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKR 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1102 ERNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQ 1181
Cdd:TIGR00618 331 AAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQA 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1182 LVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELaqvKSVIEAQTKLSDDLQREKE 1261
Cdd:TIGR00618 411 TIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSL---KEREQQLQTKEQIHLQETR 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1262 SaQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQ 1341
Cdd:TIGR00618 488 K-KAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQ 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1342 REKESAQ---QLVDNLKVELDKERKELAQVKSVIEAQTKLSDDL----QRQKESAQQLVDNLKVELDKER--KELAKVKS 1412
Cdd:TIGR00618 567 EIQQSFSiltQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLaceqHALLRKLQPEQDLQDVRLHLQQcsQELALKLT 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1413 VIEA-QTKLSDDLQR---------------QKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQL 1476
Cdd:TIGR00618 647 ALHAlQLTLTQERVRehalsirvlpkellaSRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENA 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1477 VDNLKVELEKERKELAKVNSAFEAQ--TKLSDDLKLQKEDAQREVFLVK--ERLVKEKREFEVKLATLEDIIETLEMRCT 1552
Cdd:TIGR00618 727 SSSLGSDLAAREDALNQSLKELMHQarTVLKARTEAHFNNNEEVTAALQtgAELSHLAAEIQFFNRLREEDTHLLKTLEA 806
|
650 660 670 680
....*....|....*....|....*....|....*....|....*...
gi 442616328 1553 QMEEERATaYEQINKL--ENRCQEKDNVKsSQLQVETFKVECLHHQLK 1598
Cdd:TIGR00618 807 EIGQEIPS-DEDILNLqcETLVQEEEQFL-SRLEEKSATLGEITHQLL 852
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
815-1538 |
5.41e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 68.63 E-value: 5.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 815 ADDLKRELDDLRSKNEELAKQningiikrnkfitslevnTEKVKQyitdlEEEAFKRKQKVVQLENTLSKEQSNAKEMAQ 894
Cdd:PTZ00121 1317 ADEAKKKAEEAKKKADAAKKK------------------AEEAKK-----AAEAAKAEAEAAADEAEAAEEKAEAAEKKK 1373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 895 RLDIAQQEIKDYHVEAIRFINTIRDRLQQDFNGVNTPQQlgtcMTEFLKMYDQMEVRYEEssslVEKLTESQAKLEMqvA 974
Cdd:PTZ00121 1374 EEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKK----AAAAKKKADEAKKKAEE----KKKADEAKKKAEE--A 1443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 975 ELQVELENKDTNQHSGALIKQLNDTIQNLEKVNAKLSEdntvshtvhSKLNESLLKAQKELDLRAKIIENLEASERnlsm 1054
Cdd:PTZ00121 1444 KKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE---------AKKADEAKKKAEEAKKKADEAKKAAEAKK---- 1510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1055 KLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLERNQNQSLTQLKEDALENCVLMSTKLEELQakl 1134
Cdd:PTZ00121 1511 KADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK--- 1587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1135 qegqqlvdsqklelDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVElEKERKELAHVNSAIGAQTKLSDDL 1214
Cdd:PTZ00121 1588 --------------KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA-EEEKKKVEQLKKKEAEEKKKAEEL 1652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1215 ECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQlVDNLKVELDKERKELAQVNSAFEAQTKL 1294
Cdd:PTZ00121 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK-AEELKKKEAEEKKKAEELKKAEEENKIK 1731
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1295 SDDLQRQKESAQQLVDNLKVElDKERKELAQVNSAFEaqtKLSDDLQREKESAqqlvdnLKVELDKE-RKELAQVKSVIE 1373
Cdd:PTZ00121 1732 AEEAKKEAEEDKKKAEEAKKD-EEEKKKIAHLKKEEE---KKAEEIRKEKEAV------IEEELDEEdEKRRMEVDKKIK 1801
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1374 AQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERkelaqvk 1453
Cdd:PTZ00121 1802 DIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEK------- 1874
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1454 saigaqtklsDDLECQKESVQQLVDNLKveLEKERKELAKVNSAFEAQTKLSDDLKLQKEDaqrevflVKERLVKEKREF 1533
Cdd:PTZ00121 1875 ----------DLKEDDEEEIEEADEIEK--IDKDDIEREIPNNNMAGKNNDIIDDKLDKDE-------YIKRDAEETREE 1935
|
....*
gi 442616328 1534 EVKLA 1538
Cdd:PTZ00121 1936 IIKIS 1940
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
797-1339 |
5.56e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 68.12 E-value: 5.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 797 IEKRFENIEMLIEGQLLSADDLKRELDDLRSKNEELAKQNiNGIIKRNKFITSLEVNTEKVKQyitdLEEEAFKRKQKVV 876
Cdd:TIGR04523 154 LEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIK-NKLLKLELLLSNLKKKIQKNKS----LESQISELKKQNN 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 877 QLENTLSKEQSNAKEMAQRLDIAQQEIKDYHVEAIRFINTIRDRLQQDFNG----VNTPQQLGTCMTEFLKMYDQMEvry 952
Cdd:TIGR04523 229 QLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNnkkiKELEKQLNQLKSEISDLNNQKE--- 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 953 eesSSLVEKLTESQAKLEMQVAELQVELENkdtnqhSGALIKQLNDTIQNLEK-VNAKLSEDNTVSHTVHSKLNEsLLKA 1031
Cdd:TIGR04523 306 ---QDWNKELKSELKNQEKKLEEIQNQISQ------NNKIISQLNEQISQLKKeLTNSESENSEKQRELEEKQNE-IEKL 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1032 QKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLERNQNQSLTQ 1111
Cdd:TIGR04523 376 KKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELI 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1112 LKE-----DALEncvlmsTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNL 1186
Cdd:TIGR04523 456 IKNldntrESLE------TQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKL 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1187 KVELEKERKELAHVNSAIGA--QTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQ 1264
Cdd:TIGR04523 530 ESEKKEKESKISDLEDELNKddFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKE 609
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442616328 1265 QLVDNLKVELDKERKELAQVNSafeaqtkLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDD 1339
Cdd:TIGR04523 610 KKISSLEKELEKAKKENEKLSS-------IIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDD 677
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1227-1904 |
1.37e-10 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 67.05 E-value: 1.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1227 NLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAqqlvdNLKVELD-KERKELAQVNSAFEAQTKL----------- 1294
Cdd:pfam05483 96 SIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKV-----SLKLEEEiQENKDLIKENNATRHLCNLlketcarsaek 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1295 SDDLQRQKESAQQLVDNLKVELDK-----ERKELAQVNSAFEAQTKLSDDlqreKESAQQLVDNLKVEL-DKERKELAQV 1368
Cdd:pfam05483 171 TKKYEYEREETRQVYMDLNNNIEKmilafEELRVQAENARLEMHFKLKED----HEKIQHLEEEYKKEInDKEKQVSLLL 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1369 KSVIEAQTKLSD---DLQRQKESAQQL-------VDNLKVELDKER---KELAKVKSVIE----AQTKLSDDLQRQKESA 1431
Cdd:pfam05483 247 IQITEKENKMKDltfLLEESRDKANQLeektklqDENLKELIEKKDhltKELEDIKMSLQrsmsTQKALEEDLQIATKTI 326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1432 QQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQ 1511
Cdd:pfam05483 327 CQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVE 406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1512 KEDAQReVFLVKERLVKEKREFevklatlEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKSSQL-QVETFKV 1590
Cdd:pfam05483 407 LEELKK-ILAEDEKLLDEKKQF-------EKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLkEVEDLKT 478
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1591 ECLHHQLKS-EMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDIPKVVELQHRleaetaereea 1669
Cdd:pfam05483 479 ELEKEKLKNiELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLR----------- 547
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1670 qnklavvtGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELIEFYRNRVEALERLLLASNQELEELNsiQSN 1749
Cdd:pfam05483 548 --------DELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELH--QEN 617
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1750 QAEGVRdlgdtySAAEGRQTESDQDKerYQKLALDCKILQAKYRDAKDEIkrcEKKIKDQRLEMEGKLEKMKnKMRSLYT 1829
Cdd:pfam05483 618 KALKKK------GSAENKQLNAYEIK--VNKLELELASAKQKFEEIIDNY---QKEIEDKKISEEKLLEEVE-KAKAIAD 685
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442616328 1830 AEVTRMKEKQERDAAKSASELEALTAQNAKYEEHTRKLSNQIVRLNEKILEQQKQHAIISTNLRHLQMQPISETK 1904
Cdd:pfam05483 686 EAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKK 760
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1169-1902 |
1.52e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.09 E-value: 1.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1169 SDDLQRQKESGQQLVDNLKvELEKERKelAHVNSAIGAQTKLSDDLECQKEsgqqlvDNLKVELEKERKELAQ-----VK 1243
Cdd:PTZ00121 1038 NDDVLKEKDIIDEDIDGNH-EGKAEAK--AHVGQDEGLKPSYKDFDFDAKE------DNRADEATEEAFGKAEeakktET 1108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1244 SVIEAQTKLSDDLQ-----REKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDK 1318
Cdd:PTZ00121 1109 GKAEEARKAEEAKKkaedaRKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVR 1188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1319 ERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVE-----------------LDKERKELAQVKSVIEAQTKLSDD 1381
Cdd:PTZ00121 1189 KAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEavkkaeeakkdaeeakkAEEERNNEEIRKFEEARMAHFARR 1268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1382 LQRQKESAQQLVDNLKVELDKERKELAK----VKSVIEAQTKL-----SDDLQRQKESAQQLVDNLKMELDkERKELAQV 1452
Cdd:PTZ00121 1269 QAAIKAEEARKADELKKAEEKKKADEAKkaeeKKKADEAKKKAeeakkADEAKKKAEEAKKKADAAKKKAE-EAKKAAEA 1347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1453 KSAigAQTKLSDDLECQKESVQqlVDNLKVELEKERKELAKVNSafeAQTKLSDDLKLQKEDAQREVFLVKERLVKEKRE 1532
Cdd:PTZ00121 1348 AKA--EAEAAADEAEAAEEKAE--AAEKKKEEAKKKADAAKKKA---EEKKKADEAKKKAEEDKKKADELKKAAAAKKKA 1420
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1533 FEVKlATLEDIIETLEMRctQMEEERATAYEQINKLENRCQEKDNVKSSQlqvETFKVEclhhQLKSEmATHNSLVEDLN 1612
Cdd:PTZ00121 1421 DEAK-KKAEEKKKADEAK--KKAEEAKKADEAKKKAEEAKKAEEAKKKAE---EAKKAD----EAKKK-AEEAKKADEAK 1489
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1613 RKLAEKVSKLDFVQSRlmteiAEHNQVKDQLAQITDIPKVVELQhrleAETAEREEAQNKLAVVTGRLDEITR--ELDNA 1690
Cdd:PTZ00121 1490 KKAEEAKKKADEAKKA-----AEAKKKADEAKKAEEAKKADEAK----KAEEAKKADEAKKAEEKKKADELKKaeELKKA 1560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1691 RLEHGAQILRMEETAREVGNKNAELCELIEFYR----NRVEALERLLLASNQELEELNSIQSNQAEGVRDLGDTYSAAEG 1766
Cdd:PTZ00121 1561 EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARieevMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKK 1640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1767 RQTESDQDKERYQKLALDCKILQAKYRDAKDEIKRCEKKIKDQRLEMEGKLEKMKNKMRSLYTAEVTRMKEKQERDAA-- 1844
Cdd:PTZ00121 1641 KEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAee 1720
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442616328 1845 -KSASELEALTAQNAKYEEHTRKLSNQIVRLNE----KILEQQKQHAIISTNLRHLQMQPISE 1902
Cdd:PTZ00121 1721 lKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEeekkKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1217-1433 |
2.39e-10 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 65.24 E-value: 2.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1217 QKESGQQLVDNLKVELEKERKELAQVKSVIEAqtklsddLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSD 1296
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEE-------LNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1297 DLQRQKESAQQLVDNLKVELDKErkELAQVNSAFEAQTKLSD---DLQREKESAQQLVDNLKVELDKERKELAQVKSVIE 1373
Cdd:COG3883 90 ERARALYRSGGSVSYLDVLLGSE--SFSDFLDRLSALSKIADadaDLLEELKADKAELEAKKAELEAKLAELEALKAELE 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1374 AQTKlsdDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQ 1433
Cdd:COG3883 168 AAKA---ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAA 224
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
994-1687 |
2.53e-10 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 66.15 E-value: 2.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 994 KQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNESLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKI 1073
Cdd:TIGR00618 166 KELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1074 AQIKETYEEQIKALQAKCDMEAKKNEHleRNQNQSLTQLKEDALENCvlMSTKLEELQAKLQEGQQLVDSQKLELDMNRK 1153
Cdd:TIGR00618 246 TQKREAQEEQLKKQQLLKQLRARIEEL--RAQEAVLEETQERINRAR--KAAPLAAHIKAVTQIEQQAQRIHTELQSKMR 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1154 ELALVKSAYEAQTKLSDDLQRQKESGQQLV---DNLKVELEKERKELAHVNSAIGAQTKLSdDLECQKESGQQLVDNLKV 1230
Cdd:TIGR00618 322 SRAKLLMKRAAHVKQQSSIEEQRRLLQTLHsqeIHIRDAHEVATSIREISCQQHTLTQHIH-TLQQQKTTLTQKLQSLCK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1231 ELEKERKELAQVKSVIEAQTKLSDDLQREKEsaqqlvdnlKVELDKERKELAQVNSAFEAQTK------LSDDLQRQKES 1304
Cdd:TIGR00618 401 ELDILQREQATIDTRTSAFRDLQGQLAHAKK---------QQELQQRYAELCAAAITCTAQCEklekihLQESAQSLKER 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1305 AQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKE--LAQVKSVIEAQTKLSDDL 1382
Cdd:TIGR00618 472 EQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQrgEQTYAQLETSEEDVYHQL 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1383 QRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKL 1462
Cdd:TIGR00618 552 TSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVR 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1463 SDDLECQKESVQQL--VDNLKVELEKERKELAKVNS-AFEAQTKLSDDLKLQKEDAQrevflvKERLVKEKREFEVKLAT 1539
Cdd:TIGR00618 632 LHLQQCSQELALKLtaLHALQLTLTQERVREHALSIrVLPKELLASRQLALQKMQSE------KEQLTYWKEMLAQCQTL 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1540 LEDIIETLEMRCTQMEEERATAYEQINKLENR-------CQEKDNVKSSQLQVETFKVECLHHQLKSEMATHNSLvEDLN 1612
Cdd:TIGR00618 706 LRELETHIEEYDREFNEIENASSSLGSDLAARedalnqsLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAEL-SHLA 784
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442616328 1613 RKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDIPKVVELQHRleaetaerEEAQNKLAVVTGRLDEITREL 1687
Cdd:TIGR00618 785 AEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEE--------EQFLSRLEEKSATLGEITHQL 851
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1153-1884 |
2.98e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.32 E-value: 2.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1153 KELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVEL 1232
Cdd:PTZ00121 1095 EAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAED 1174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1233 EKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNL 1312
Cdd:PTZ00121 1175 AKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEI 1254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1313 KVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSvieaQTKLSDDLQRQKESAQQL 1392
Cdd:PTZ00121 1255 RKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAE----EAKKADEAKKKAEEAKKK 1330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1393 VDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDlecqKES 1472
Cdd:PTZ00121 1331 ADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED----KKK 1406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1473 VQQLVdnlKVELEKERKELAKVNSafeAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREFEVKLATLEDIIETLEMRCt 1552
Cdd:PTZ00121 1407 ADELK---KAAAAKKKADEAKKKA---EEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKA- 1479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1553 qmeEERATAYEQINKLENRCQEKDNVKSSQlqvetfkveclHHQLKSEMAthnslvedlnrKLAEKVSKLDFVQSRLMTE 1632
Cdd:PTZ00121 1480 ---EEAKKADEAKKKAEEAKKKADEAKKAA-----------EAKKKADEA-----------KKAEEAKKADEAKKAEEAK 1534
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1633 IAEHNQVKDQLAQITDIPKVVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKN 1712
Cdd:PTZ00121 1535 KADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKK 1614
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1713 AELcELIEFYRNRVEALERLLLASNQELEELNSIQSNQAEGVRDLGDTYSAAEGRQTESDQDKERYQKLALDCKILQAKY 1792
Cdd:PTZ00121 1615 AEE-AKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA 1693
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1793 RDAKDEIKRCEKKIKDQRLEMEGKLEKMKnKMRSLYTAEVTRMKEKQERDAAKsaselealtAQNAKYEEHTRKLSNQIV 1872
Cdd:PTZ00121 1694 LKKEAEEAKKAEELKKKEAEEKKKAEELK-KAEEENKIKAEEAKKEAEEDKKK---------AEEAKKDEEEKKKIAHLK 1763
|
730
....*....|..
gi 442616328 1873 RLNEKILEQQKQ 1884
Cdd:PTZ00121 1764 KEEEKKAEEIRK 1775
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1217-1431 |
4.37e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 64.40 E-value: 4.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1217 QKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNsafEAQTKLSD 1296
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE---KEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1297 DLQRQKES-AQQLVDNLKVELDKERKELAQVNSAFEAQTKLS---------DDLQREKESAQQLVDNLKVELDKERKELA 1366
Cdd:COG4942 98 ELEAQKEElAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQylkylaparREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442616328 1367 QVKSVIEAQTKlsdDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESA 1431
Cdd:COG4942 178 ALLAELEEERA---ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
954-1456 |
4.75e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 65.45 E-value: 4.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 954 ESSSLVEKLTEsqakLEMQVAELQVELENKDTNQHSGALIKQLNDTIqnLEKVNAKLSEDNTVSHTVhSKLNESLLKAQK 1033
Cdd:PRK02224 200 EEKDLHERLNG----LESELAELDEEIERYEEQREQARETRDEADEV--LEEHEERREELETLEAEI-EDLRETIAETER 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1034 ELDLRAKIIENLEA------SERNLSMKLCELKDLknklksSDEKIAQIKETYEEQIKALQAKCdMEAKKNEHLERNQNQ 1107
Cdd:PRK02224 273 EREELAEEVRDLRErleeleEERDDLLAEAGLDDA------DAEAVEARREELEDRDEELRDRL-EECRVAAQAHNEEAE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1108 SLTQLKEDALENCVLMSTKLEELQAKLQEGQQLVDSQKL-------ELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQ 1180
Cdd:PRK02224 346 SLREDADDLEERAEELREEAAELESELEEAREAVEDRREeieeleeEIEELRERFGDAPVDLGNAEDFLEELREERDELR 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1181 QLVDNLKVELEKERKELAHvNSAIGAQTKLS---------------DDLECQKESGQQLVDNLKVELEKERKELAQVKSV 1245
Cdd:PRK02224 426 EREAELEATLRTARERVEE-AEALLEAGKCPecgqpvegsphvetiEEDRERVEELEAELEDLEEEVEEVEERLERAEDL 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1246 IEAQTKLsDDLQREKESAQQLVDNLKVELDKERKELAQVNsafEAQTKLSDDLQRQKESAQQL---VDNLKVELDKERKE 1322
Cdd:PRK02224 505 VEAEDRI-ERLEERREDLEELIAERRETIEEKRERAEELR---ERAAELEAEAEEKREAAAEAeeeAEEAREEVAELNSK 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1323 LAQVNSAFEAQTKLSDDLQREKESAQQLvdnlkVELDKERKELAQVKSviEAQTKLSDDLQRQKESAQQLVDNlKVELDK 1402
Cdd:PRK02224 581 LAELKERIESLERIRTLLAAIADAEDEI-----ERLREKREALAELND--ERRERLAEKRERKRELEAEFDEA-RIEEAR 652
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 442616328 1403 ERKE-----LAKVKSVIEAQTKLSDDLQRQKESAQQLVDNLKmELDKERKELAQVKSAI 1456
Cdd:PRK02224 653 EDKEraeeyLEQVEEKLDELREERDDLQAEIGAVENELEELE-ELRERREALENRVEAL 710
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1365-1582 |
9.85e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 63.24 E-value: 9.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1365 LAQVKSVIEAQTKLsDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDK 1444
Cdd:COG4942 16 AAQADAAAEAEAEL-EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1445 ERKELAQVKSAIGAQTKL------------------SDDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSD 1506
Cdd:COG4942 95 LRAELEAQKEELAELLRAlyrlgrqpplalllspedFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442616328 1507 DLKLQKEDAQREvflvKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKSSQ 1582
Cdd:COG4942 175 ELEALLAELEEE----RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
855-1456 |
2.91e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.77 E-value: 2.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 855 EKVKQYITDLE--EEAFKRKQKVVQLENTLSKEQSnaKEMAQRLDIAQQ--EIKDYHVEAIRFINTIRDRLQQdfngvnT 930
Cdd:PRK03918 148 EKVVRQILGLDdyENAYKNLGEVIKEIKRRIERLE--KFIKRTENIEELikEKEKELEEVLREINEISSELPE------L 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 931 PQQLGTCMTEfLKMYDQMEVRYEESSSLVEKLTESQAKLEMQVAELQVELENKDTNqhsgalIKQLNDTIQNLEKVNAKL 1010
Cdd:PRK03918 220 REELEKLEKE-VKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE------IEELEEKVKELKELKEKA 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1011 SEdntvshtvHSKLNESLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAK 1090
Cdd:PRK03918 293 EE--------YIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELY 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1091 CDMEAKKNEhLERNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAY-------- 1162
Cdd:PRK03918 365 EEAKAKKEE-LERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKgkcpvcgr 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1163 ------------EAQTKLSDDLQRQKESGQQLVDnLKVELEKERKELAHvNSAIGAQTKLSDDLECQKESGQQLvdNLKv 1230
Cdd:PRK03918 444 elteehrkelleEYTAELKRIEKELKEIEEKERK-LRKELRELEKVLKK-ESELIKLKELAEQLKELEEKLKKY--NLE- 518
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1231 ELEKERKELAQVKsviEAQTKLSDDLQREKESAQQLVdnlkvELDKERKELaqVNSAFEAQTKLSDDLQRQKESAQQLVD 1310
Cdd:PRK03918 519 ELEKKAEEYEKLK---EKLIKLKGEIKSLKKELEKLE-----ELKKKLAEL--EKKLDELEEELAELLKELEELGFESVE 588
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1311 nlkvELDKERKELaqvNSAFEAQTKLSDdLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLqrQKESAQ 1390
Cdd:PRK03918 589 ----ELEERLKEL---EPFYNEYLELKD-AEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEEL--EKKYSE 658
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442616328 1391 QLVDNLKVELDKERKELAKVKSVIEAqtklsddLQRQKESAQQLVDNLKMEL---DKERKELAQVKSAI 1456
Cdd:PRK03918 659 EEYEELREEYLELSRELAGLRAELEE-------LEKRREEIKKTLEKLKEELeerEKAKKELEKLEKAL 720
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
798-1429 |
3.03e-09 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 62.43 E-value: 3.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 798 EKRFENIEMLIEGQLLSADDLKRELDDLRSKNEELAKQNINGIIKRNK-------FITSLEVNTEKVKQYITDLEEEafk 870
Cdd:pfam05483 105 ENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNAtrhlcnlLKETCARSAEKTKKYEYEREET--- 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 871 rKQKVVQLENTLSKEQSNAKEMAQRLDIAQQEIKDYHVEAIRFINTIRDRLQQDFNgvNTPQQLGTCMTEFLKMYDQMEv 950
Cdd:pfam05483 182 -RQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEIN--DKEKQVSLLLIQITEKENKMK- 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 951 ryeessSLVEKLTESQAKLEMQVAELQVELEN-KDTNQHSGALIKQLNDTIQNLEK---VNAKLSEDNTVSHTVHSKLNE 1026
Cdd:pfam05483 258 ------DLTFLLEESRDKANQLEEKTKLQDENlKELIEKKDHLTKELEDIKMSLQRsmsTQKALEEDLQIATKTICQLTE 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1027 SLlKAQKELDLRAKIIENLEASErnLSMKLCELKDL----KNKLKSSDEKIAQIkeTYEEQIKALQAKCDMEAKKNEHLE 1102
Cdd:pfam05483 332 EK-EAQMEELNKAKAAHSFVVTE--FEATTCSLEELlrteQQRLEKNEDQLKII--TMELQKKSSELEEMTKFKNNKEVE 406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1103 RNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTK----LSDDLQRQKES 1178
Cdd:pfam05483 407 LEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKevedLKTELEKEKLK 486
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1179 GQQLVDNLKvELEKERKELAHVNSAIGAQTK--LSDDLECQK---------ESGQQLVDNLKVELEKERKELAQVKSVIE 1247
Cdd:pfam05483 487 NIELTAHCD-KLLLENKELTQEASDMTLELKkhQEDIINCKKqeermlkqiENLEEKEMNLRDELESVREEFIQKGDEVK 565
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1248 AQTKLSDDLQREKESA-----------QQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVEL 1316
Cdd:pfam05483 566 CKLDKSEENARSIEYEvlkkekqmkilENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELEL 645
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1317 DKERKELAQVNSAFEAQTKL----SDDLQREKESAQQLVD---NLKVELDKE-RKELAQVKSVIEAQTKLSDDLQRQKES 1388
Cdd:pfam05483 646 ASAKQKFEEIIDNYQKEIEDkkisEEKLLEEVEKAKAIADeavKLQKEIDKRcQHKIAEMVALMEKHKHQYDKIIEERDS 725
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 442616328 1389 AQQLVDN-----------LKVELDKERKELAKVKSVIEAQTKLSDDLQRQKE 1429
Cdd:pfam05483 726 ELGLYKNkeqeqssakaaLEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAK 777
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1224-1743 |
3.14e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.77 E-value: 3.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1224 LVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKE 1303
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1304 SAQQLVDNLKvELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLV---DNLKVELDKERKELAQVKSVIEAQTKLSD 1380
Cdd:PRK03918 253 SKRKLEEKIR-ELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSefyEEYLDELREIEKRLSRLEEEINGIEERIK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1381 DLQRQKESAQqlvdnlkvELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLVDNLK-MELDKERKELAQVKSAigaq 1459
Cdd:PRK03918 332 ELEEKEERLE--------ELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTgLTPEKLEKELEELEKA---- 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1460 tklsddlecqKESVQQLVDNL---KVELEKERKELAK-VNSAFEAQTK-------LSDDlklQKEDAQREVFLVKERLVK 1528
Cdd:PRK03918 400 ----------KEEIEEEISKItarIGELKKEIKELKKaIEELKKAKGKcpvcgreLTEE---HRKELLEEYTAELKRIEK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1529 EKREFEVKLATLEDIIETLEMRCTQMEEERA--TAYEQINKLENRCQEKDNVKSSQLQVETFKVECLHHQLKSEMATHNS 1606
Cdd:PRK03918 467 ELKEIEEKERKLRKELRELEKVLKKESELIKlkELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKK 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1607 LVE---DLNRKLAEKVSKLDFVQSRLM------------------TEIAEHNQVKDQLAQITDIPKVVE-LQHRLEAETA 1664
Cdd:PRK03918 547 ELEkleELKKKLAELEKKLDELEEELAellkeleelgfesveeleERLKELEPFYNEYLELKDAEKELErEEKELKKLEE 626
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442616328 1665 EREEAQNKLAVVTGRLDEITRELDNARLEHGaqilrmEETAREVGNKNAELCELIEFYRNRVEALERLLLASNQELEEL 1743
Cdd:PRK03918 627 ELDKAFEELAETEKRLEELRKELEELEKKYS------EEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1155-1389 |
3.48e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 61.32 E-value: 3.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1155 LALVKSAYEAQTKLsDDLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEK 1234
Cdd:COG4942 16 AAQADAAAEAEAEL-EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1235 ERKELAQVKSVIEAQTKlsddlqrekeSAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKE---SAQQLVDN 1311
Cdd:COG4942 95 LRAELEAQKEELAELLR----------ALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEelrADLAELAA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442616328 1312 LKVELDKERKELAQVNSAFEAQTKlsdDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESA 1389
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERA---ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1301-1503 |
4.02e-09 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 61.38 E-value: 4.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1301 QKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKlsd 1380
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAR--- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1381 DLQRQK------------ESAQQLVDNLKVeldkerkelakVKSVIEAQTKLSDDLQRQKESaqqlVDNLKMELDKERKE 1448
Cdd:COG3883 94 ALYRSGgsvsyldvllgsESFSDFLDRLSA-----------LSKIADADADLLEELKADKAE----LEAKKAELEAKLAE 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 442616328 1449 LAQVKSAIGAQTKlsdDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTK 1503
Cdd:COG3883 159 LEALKAELEAAKA---ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEA 210
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1170-1649 |
1.20e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 60.70 E-value: 1.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1170 DDLQRQKESGQQLVDnLKVELEKERKELAHVNSAI------GAQTKLsddlecqkESGQQLVDNLKVELEKERKELAQVK 1243
Cdd:COG4913 245 EDAREQIELLEPIRE-LAERYAAARERLAELEYLRaalrlwFAQRRL--------ELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1244 SVIEAQTKLSDDLQREKESAQ-QLVDNLKVELDKERKELAQVNSAFEAQTKL-----------SDDLQRQKESAQQLVDN 1311
Cdd:COG4913 316 ARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARLEALlaalglplpasAEEFAALRAEAAALLEA 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1312 LKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEA----------------- 1374
Cdd:COG4913 396 LEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLDEAelpfvgelievrpeeer 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1375 -------------------------------QTKL------------SDDLQRQKESAQQLVDNLKVE-------LDKE- 1403
Cdd:COG4913 476 wrgaiervlggfaltllvppehyaaalrwvnRLHLrgrlvyervrtgLPDPERPRLDPDSLAGKLDFKphpfrawLEAEl 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1404 --RKELAKVKSV-----------IEAQTKLS------DDLQRQKE------SAQQLVDNLKMELDKERKELAQVKSAIGA 1458
Cdd:COG4913 556 grRFDYVCVDSPeelrrhpraitRAGQVKGNgtrhekDDRRRIRSryvlgfDNRAKLAALEAELAELEEELAEAEERLEA 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1459 QTKLSDDLECQKESVQQLV----DNLKV--------ELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQREvflvKERL 1526
Cdd:COG4913 636 LEAELDALQERREALQRLAeyswDEIDVasaereiaELEAELERLDASSDDLAALEEQLEELEAELEELEEE----LDEL 711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1527 VKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQinKLENRCQEkdnvkSSQLQVETFKVECLHHQLKSEMATHNS 1606
Cdd:COG4913 712 KGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA--LLEERFAA-----ALGDAVERELRENLEERIDALRARLNR 784
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 442616328 1607 LVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDI 1649
Cdd:COG4913 785 AEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLEED 827
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1100-1542 |
1.44e-08 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 60.74 E-value: 1.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1100 HLERNQNQSLTQLKEdALENCVLMSTKLEELQAKLQEGQQlvdsqklELDMNRKELALVKSAYEAQTKLsddlqrqkESG 1179
Cdd:COG3096 289 ELRRELFGARRQLAE-EQYRLVEMARELEELSARESDLEQ-------DYQAASDHLNLVQTALRQQEKI--------ERY 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1180 QQLVDNLKVELEKERKELAHVNSAIgaqtklsDDLECQKESGQQLVDNLKVelekerkELAQVKSVIEAQTKLSDDLQ-- 1257
Cdd:COG3096 353 QEDLEELTERLEEQEEVVEEAAEQL-------AEAEARLEAAEEEVDSLKS-------QLADYQQALDVQQTRAIQYQqa 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1258 -REKESAQQL-------VDNLKVELDKERKELAQVNSA-FEAQTKLS--DDLQRQKESAQQLVDNLKVELDKERkelaqv 1326
Cdd:COG3096 419 vQALEKARALcglpdltPENAEDYLAAFRAKEQQATEEvLELEQKLSvaDAARRQFEKAYELVCKIAGEVERSQ------ 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1327 nsAFEAQTKLSDDLQREKESAQQlVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLvDNLKVELDKERKE 1406
Cdd:COG3096 493 --AWQTARELLRRYRSQQALAQR-LQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEEL-EELLAELEAQLEE 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1407 LakvksvieaQTKLSDDLQRQKESAQQLVdnlkmELDKERKELAQVKSA-IGAQ---TKLSDDLECQKESVQQLVDNLKV 1482
Cdd:COG3096 569 L---------EEQAAEAVEQRSELRQQLE-----QLRARIKELAARAPAwLAAQdalERLREQSGEALADSQEVTAAMQQ 634
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1483 ELEKERkelakvnsafeAQTKLSDDLKLQKEDAQREVflvkERLVKEKREFEVKLATLED 1542
Cdd:COG3096 635 LLERER-----------EATVERDELAARKQALESQI----ERLSQPGGAEDPRLLALAE 679
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1042-1629 |
2.39e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 59.69 E-value: 2.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1042 IENLEASERNLSmklcELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKcdMEAKKNEHLERNQNqsLTQLKEdalencv 1121
Cdd:PRK03918 157 LDDYENAYKNLG----EVIKEIKRRIERLEKFIKRTENIEELIKEKEKE--LEEVLREINEISSE--LPELRE------- 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1122 lmstKLEELQAKLQEgqqlVDSQKLELDMNRKELALVKSAYEaqtKLSDDLQRQKESGQQLVDNLKvELEKERKELAHVN 1201
Cdd:PRK03918 222 ----ELEKLEKEVKE----LEELKEEIEELEKELESLEGSKR---KLEEKIRELEERIEELKKEIE-ELEEKVKELKELK 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1202 SAIGAQTKLSddlecqkesgqQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLvDNLKVELDKERKEL 1281
Cdd:PRK03918 290 EKAEEYIKLS-----------EFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEEL-KKKLKELEKRLEEL 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1282 AQVNSAFEAQTKLSDDLQRQK-----------ESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQL 1350
Cdd:PRK03918 358 EERHELYEEAKAKKEELERLKkrltgltpeklEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGK 437
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1351 VDNLKVELDKERKelaqvKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVI----------EAQTKL 1420
Cdd:PRK03918 438 CPVCGRELTEEHR-----KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIklkelaeqlkELEEKL 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1421 SDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIgaqtKLSDDLECQKESVQQLVDNLKVELEKERKELAKVnsAFEA 1500
Cdd:PRK03918 513 KKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKEL----EKLEELKKKLAELEKKLDELEEELAELLKELEEL--GFES 586
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1501 QTKLSDDLK---------LQKEDAQREVFLVKERLVKEKREFEVKLATLEDIIETLEMRCTQMEE-ERATAYEQINKLEN 1570
Cdd:PRK03918 587 VEELEERLKelepfyneyLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEElEKKYSEEEYEELRE 666
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442616328 1571 RCQEkdnvKSSQLQVETFKVECLHHQLKSEMATHNSLVEDLN--RKLAEKVSKLDFVQSRL 1629
Cdd:PRK03918 667 EYLE----LSRELAGLRAELEELEKRREEIKKTLEKLKEELEerEKAKKELEKLEKALERV 723
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1126-1329 |
2.54e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 58.62 E-value: 2.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1126 KLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVE-------LEKERKELA 1198
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEiaelraeLEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1199 HVNSAI---GAQTKL--------SDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLV 1267
Cdd:COG4942 108 ELLRALyrlGRQPPLalllspedFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEER 187
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442616328 1268 DNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSA 1329
Cdd:COG4942 188 AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFA 249
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
799-1548 |
3.50e-08 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 59.68 E-value: 3.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 799 KRFENIEMLIEGQLLSADDLKRELDDLRSKNEELAKQNINGIIK-RNKFITSLEVNTEKVkqYITDLEEEaFKRKQKVVQ 877
Cdd:TIGR01612 537 KLYKEIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEKEiKDLFDKYLEIDDEII--YINKLKLE-LKEKIKNIS 613
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 878 LENTLSKEQSNAKEMAQRLDIAQQE---IKDYHV-EAIRFINTIrdrlqqdfngvntpqqLGTCMTEFLKMY-DQMEVRY 952
Cdd:TIGR01612 614 DKNEYIKKAIDLKKIIENNNAYIDElakISPYQVpEHLKNKDKI----------------YSTIKSELSKIYeDDIDALY 677
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 953 EESSSLVEKL----TESQAKLEmqvaelqvELENKDTNQHsgalikqlnDTIQNLEKVNAKLSEDNTvsHTVHSKLNESL 1028
Cdd:TIGR01612 678 NELSSIVKENaidnTEDKAKLD--------DLKSKIDKEY---------DKIQNMETATVELHLSNI--ENKKNELLDII 738
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1029 LKAQKEL------DLRaKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKcDMEAKKNEHLE 1102
Cdd:TIGR01612 739 VEIKKHIhgeinkDLN-KILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQINIDNIK-DEDAKQNYDKS 816
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1103 RNQNQSLTqLKEDALENCV-LMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQT---KLSDDLQRQKES 1178
Cdd:TIGR01612 817 KEYIKTIS-IKEDEIFKIInEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFAELTNKIKAEIsddKLNDYEKKFNDS 895
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1179 gQQLVDNLKVELEKERKElahvnsaIGAQTKLSDDLE-CqkESGQQLVDNLKVELEKERKELAQVKSVIeaqtKLSDDLQ 1257
Cdd:TIGR01612 896 -KSLINEINKSIEEEYQN-------INTLKKVDEYIKiC--ENTKESIEKFHNKQNILKEILNKNIDTI----KESNLIE 961
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1258 RE-KESAQQLVDNLKVELDKERKELAQvnsafeaqtklsDDLQRQKESAQQLVDNLKVELDKERKELaqVNSAFEAQTKL 1336
Cdd:TIGR01612 962 KSyKDKFDNTLIDKINELDKAFKDASL------------NDYEAKNNELIKYFNDLKANLGKNKENM--LYHQFDEKEKA 1027
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1337 SDDLQREKESAQQLVDNLKV-----------ELDKE---RKELAQVKSVIEAQTKLSD-DLQRQKESAQQLVDNLKVELD 1401
Cdd:TIGR01612 1028 TNDIEQKIEDANKNIPNIEIaihtsiyniidEIEKEigkNIELLNKEILEEAEINITNfNEIKEKLKHYNFDDFGKEENI 1107
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1402 KERKELAKVKSVIEAQTKLSD----DLQRQKESAQQLVDNLKMELDKERKElaqvksaigAQTKLSDD----LECQKESV 1473
Cdd:TIGR01612 1108 KYADEINKIKDDIKNLDQKIDhhikALEEIKKKSENYIDEIKAQINDLEDV---------ADKAISNDdpeeIEKKIENI 1178
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442616328 1474 QQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREFEVKLATLEDIIETLE 1548
Cdd:TIGR01612 1179 VTKIDKKKNIYDEIKKLLNEIAEIEKDKTSLEEVKGINLSYGKNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDLD 1253
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1125-1349 |
5.32e-08 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 57.53 E-value: 5.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1125 TKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHVNSAI 1204
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1205 ---GAQTKLSDDLEcQKESGQQLVDNLKVelekerkelaqVKSVIEAQTKLSDDLQrekeSAQQLVDNLKVELDKERKEL 1281
Cdd:COG3883 96 yrsGGSVSYLDVLL-GSESFSDFLDRLSA-----------LSKIADADADLLEELK----ADKAELEAKKAELEAKLAEL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442616328 1282 AQVNSAFEAQTKlsdDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQ 1349
Cdd:COG3883 160 EALKAELEAAKA---ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAA 224
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1261-1493 |
5.70e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.77 E-value: 5.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1261 ESAQQLVDNLK------VELDKERKE---LAQVNSAFEAQTKLSDDLQRQkesaQQLVDNLKVELDKERKELAQvnsafe 1331
Cdd:COG4913 225 EAADALVEHFDdlerahEALEDAREQielLEPIRELAERYAAARERLAEL----EYLRAALRLWFAQRRLELLE------ 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1332 aqtKLSDDLQREKESAQQLVDNLKVELDKERKELAqvksviEAQTKLSDDLQRQKESAQQLVDNLKVELDK---ERKELA 1408
Cdd:COG4913 295 ---AELEELRAELARLEAELERLEARLDALREELD------ELEAQIRGNGGDRLEQLEREIERLERELEErerRRARLE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1409 KVKSVIEAQTKLS-DDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKE 1487
Cdd:COG4913 366 ALLAALGLPLPASaEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLAL 445
|
....*.
gi 442616328 1488 RKELAK 1493
Cdd:COG4913 446 RDALAE 451
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1441-1814 |
7.07e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 7.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1441 ELDKERKELAQVKSAIgaqtklsddlecqkESVQQLVDNLKVELEKERKELAKvnsAFEAQtklsdDLKLQKED-AQREV 1519
Cdd:TIGR02169 171 KKEKALEELEEVEENI--------------ERLDLIIDEKRQQLERLRREREK---AERYQ-----ALLKEKREyEGYEL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1520 FLVKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKSSQLQVETFKVECLHHQLKS 1599
Cdd:TIGR02169 229 LKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLER 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1600 EMATHNSLVEDLNRKLAEKVSKLDFVQSR---LMTEIAEHNQVKDQLAQITDIPKVV--ELQHRLEAETAEREEAQNKLA 1674
Cdd:TIGR02169 309 SIAEKERELEDAEERLAKLEAEIDKLLAEieeLEREIEEERKRRDKLTEEYAELKEEleDLRAELEEVDKEFAETRDELK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1675 VVTGRLDEITRELDnarlEHGAQILRMEETAREVGNKNAELceliefyRNRVEALERLLLASNQELEelnsiqsnqaegv 1754
Cdd:TIGR02169 389 DYREKLEKLKREIN----ELKRELDRLQEELQRLSEELADL-------NAAIAGIEAKINELEEEKE------------- 444
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1755 rDLGDTYSAAEGRQTESDQDKERYQKlaldckilqaKYRDAKDEIKRCEKKIKDQRLEME 1814
Cdd:TIGR02169 445 -DKALEIKKQEWKLEQLAADLSKYEQ----------ELYDLKEEYDRVEKELSKLQRELA 493
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1152-1501 |
1.31e-07 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 57.66 E-value: 1.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1152 RKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKL---SDDLEcqkesgqqlvdnl 1228
Cdd:PRK04863 292 RRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIeryQADLE------------- 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1229 kvELEkERkeLAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKveldkerKELAQVNSAFEAQTKLSddLQRQK-----E 1303
Cdd:PRK04863 359 --ELE-ER--LEEQNEVVEEADEQQEENEARAEAAEEEVDELK-------SQLADYQQALDVQQTRA--IQYQQavqalE 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1304 SAQQL-------VDNLKVELDKER-KELAQVNSAFEAQTKLS--DDLQREKESAQQLVDNLKVELDKE------------ 1361
Cdd:PRK04863 425 RAKQLcglpdltADNAEDWLEEFQaKEQEATEELLSLEQKLSvaQAAHSQFEQAYQLVRKIAGEVSRSeawdvarellrr 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1362 -RKELAQVKSVIEAQTKLSDDLQR--QKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQ----L 1434
Cdd:PRK04863 505 lREQRHLAEQLQQLRMRLSELEQRlrQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARErrmaL 584
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442616328 1435 VDNLKmELDKERKELAQVKSA-IGAQTKLSDDLEC---QKESVQQLVDNLKVELEKERkELAKVNSAFEAQ 1501
Cdd:PRK04863 585 RQQLE-QLQARIQRLAARAPAwLAAQDALARLREQsgeEFEDSQDVTEYMQQLLERER-ELTVERDELAAR 653
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1130-1570 |
1.58e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.70 E-value: 1.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1130 LQAKLQ-EGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKvELEKERKELAHVNSAIGAQT 1208
Cdd:COG4717 47 LLERLEkEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELE-ELEAELEELREELEKLEKLL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1209 KLSDDLEcQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVEldkERKELAQVNSAF 1288
Cdd:COG4717 126 QLLPLYQ-ELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLA---TEEELQDLAEEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1289 EAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELaqvnsafeaqtkLSDDLQREKESAQQ----------LVDNLKVEL 1358
Cdd:COG4717 202 EELQQRLAELEEELEEAQEELEELEEELEQLENEL------------EAAALEERLKEARLllliaaallaLLGLGGSLL 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1359 DKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDnlKVELDKERKELAKvKSVIEAQTKLSDDLQRQKESAQQLVDNL 1438
Cdd:COG4717 270 SLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAE--ELQALPALEELEE-EELEELLAALGLPPDLSPEELLELLDRI 346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1439 KmELDKERKELAQVKSAIgaqtklsdDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQRE 1518
Cdd:COG4717 347 E-ELQELLREAEELEEEL--------QLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGE 417
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 442616328 1519 VFLVKERLVKEkrEFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLEN 1570
Cdd:COG4717 418 LEELLEALDEE--ELEEELEELEEELEELEEELEELREELAELEAELEQLEE 467
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1218-1700 |
2.25e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.31 E-value: 2.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1218 KESGQQLVDNLKV--ELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVnsafeaqtkls 1295
Cdd:COG4717 60 KPQGRKPELNLKElkELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL----------- 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1296 dDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKsvieaq 1375
Cdd:COG4717 129 -PLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEEL------ 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1376 tklsDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQtklsdDLQRQKESAQQ----------LVDNLKMELDKE 1445
Cdd:COG4717 202 ----EELQQRLAELEEELEEAQEELEELEEELEQLENELEAA-----ALEERLKEARLllliaaallaLLGLGGSLLSLI 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1446 RKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEK---ERKELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLV 1522
Cdd:COG4717 273 LTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALeelEEEELEELLAALGLPPDLSPEELLELLDRIEELQEL 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1523 KERLVKEKREfeVKLATLEDIIETLEMRCTQMEEEraTAYEQINKLENRCQEKDNVKSSQLQVETFKVECLHHQLKSEMA 1602
Cdd:COG4717 353 LREAEELEEE--LQLEELEQEIAALLAEAGVEDEE--ELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEE 428
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1603 THNSLVEDLNRKLAEKVSKLDfvqsRLMTEIAEHNQvkdQLAQITDIPKVVELQHRLEAETAEREEAQNKLAVVTGRLDE 1682
Cdd:COG4717 429 ELEEELEELEEELEELEEELE----ELREELAELEA---ELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALEL 501
|
490
....*....|....*...
gi 442616328 1683 ITRELDNARLEHGAQILR 1700
Cdd:COG4717 502 LEEAREEYREERLPPVLE 519
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1138-1366 |
2.44e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.54 E-value: 2.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1138 QQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQ 1217
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1218 KESGQQLVDNLKVELEKeRKELAQVKSVIEAQTklSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDD 1297
Cdd:COG4942 99 LEAQKEELAELLRALYR-LGRQPPLALLLSPED--FLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442616328 1298 LQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELA 1366
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
573-1104 |
3.10e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 56.18 E-value: 3.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 573 NNDLELDNERLN---DKCAELKSIIDRGDQHLADINLQLIEKEKQIKDVGAEIQELRKRNINLENMLSQIADKEASAASH 649
Cdd:TIGR04523 109 NSEIKNDKEQKNkleVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKN 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 650 AQHLKQcgELLRAKYEVcrNELIAKNAAQDELVRMMmvpdgETLNGRVRQLID-LEMMHDEHNKMYAQMLK---QLNELS 725
Cdd:TIGR04523 189 IDKIKN--KLLKLELLL--SNLKKKIQKNKSLESQI-----SELKKQNNQLKDnIEKKQQEINEKTTEISNtqtQLNQLK 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 726 AKHDNMthshLDFVKRTEIELETKNAQImafDEHNNHFDRFLTRIFTLlrsRNCPKSTTMGSATNFLESMH-----IEKR 800
Cdd:TIGR04523 260 DEQNKI----KKQLSEKQKELEQNNKKI---KELEKQLNQLKSEISDL---NNQKEQDWNKELKSELKNQEkkleeIQNQ 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 801 FENIEMLIEGQLLSADDLKRELDDLRSKNEELAKQningIIKRNKFITSLEVNTEKVKQYITDLEEEAFKRKQKVVQLEN 880
Cdd:TIGR04523 330 ISQNNKIISQLNEQISQLKKELTNSESENSEKQRE----LEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEK 405
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 881 TLSKEQSNAKEMAQRLDIAQQEIKDYHVEAIRFINTIRDRLQQDfngvntpqqlgtcmTEFLKMYDQMEVRYEESSSLVE 960
Cdd:TIGR04523 406 LNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQD--------------SVKELIIKNLDNTRESLETQLK 471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 961 KLTESQAKLEMQVAELQVELENKDTNqhsgalIKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNESLLKAQKEL-DLRA 1039
Cdd:TIGR04523 472 VLSRSINKIKQNLEQKQKELKSKEKE------LKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKIsDLED 545
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442616328 1040 KII--------ENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLERN 1104
Cdd:TIGR04523 546 ELNkddfelkkENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE 618
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1058-1486 |
4.35e-07 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 55.69 E-value: 4.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1058 ELKDLKNKLKSSDEKIAQIKEtyeeQIKALQAKCDMEAKknehlERNQNQSLTQLkedalencvlmSTKLEELQAKLQEG 1137
Cdd:PRK11281 81 ETEQLKQQLAQAPAKLRQAQA----ELEALKDDNDEETR-----ETLSTLSLRQL-----------ESRLAQTLDQLQNA 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1138 QQlvdsqklELDMNRKELALVKSAYE-AQTKLSDDLQRQKESGQQLVDNLKvelekerkelahvnsaigAQTKLSDDLEC 1216
Cdd:PRK11281 141 QN-------DLAEYNSQLVSLQTQPErAQAALYANSQRLQQIRNLLKGGKV------------------GGKALRPSQRV 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1217 QKESGQQLVdNLKVELEkeRKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQvNSAFEAQTklSD 1296
Cdd:PRK11281 196 LLQAEQALL-NAQNDLQ--RKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSE-KTVQEAQS--QD 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1297 DLQRQKESAqqLVdnlkveldkeRKELaqvnsafEAQTKLSDDLQREKESAQQLV-DNLKVE--LDKerkeLAQVKSVIE 1373
Cdd:PRK11281 270 EAARIQANP--LV----------AQEL-------EINLQLSQRLLKATEKLNTLTqQNLRVKnwLDR----LTQSERNIK 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1374 AQTK-------LSDDLQRQKES----------AQQLVDnLKV---ELDKERKELAKVKSVIEaqtKLsddLQRQKESAQ- 1432
Cdd:PRK11281 327 EQISvlkgsllLSRILYQQQQAlpsadlieglADRIAD-LRLeqfEINQQRDALFQPDAYID---KL---EAGHKSEVTd 399
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 442616328 1433 QLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEK 1486
Cdd:PRK11281 400 EVRDALLQLLDERRELLDQLNKQLNNQLNLAINLQLNQQQLLSVSDSLQSTLTQ 453
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
1145-1565 |
4.60e-07 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 55.03 E-value: 4.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1145 KLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHV--------------------NSAI 1204
Cdd:pfam05701 41 ELELEKVQEEIPEYKKQSEAAEAAKAQVLEELESTKRLIEELKLNLERAQTEEAQAkqdselaklrveemeqgiadEASV 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1205 GAQTKlsddLECQKESGQQLVDNL---KVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKEL 1281
Cdd:pfam05701 121 AAKAQ----LEVAKARHAAAVAELksvKEELESLRKEYASLVSERDIAIKRAEEAVSASKEIEKTVEELTIELIATKESL 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1282 AQVNSA-FEAQT-KLSDDLQRQKESAqqlvdNLKVELDKERKELAQVNSafeaQTKLSDDLQREKESAQQLVDNLKVELd 1359
Cdd:pfam05701 197 ESAHAAhLEAEEhRIGAALAREQDKL-----NWEKELKQAEEELQRLNQ----QLLSAKDLKSKLETASALLLDLKAEL- 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1360 kerkeLAQVKSvieaqtKLSDDLQRQKESAQQLVDnLKVELDKERKELAKVKSVIEaqtKLSDDLQRQKESAQqlvdNLK 1439
Cdd:pfam05701 267 -----AAYMES------KLKEEADGEGNEKKTSTS-IQAALASAKKELEEVKANIE---KAKDEVNCLRVAAA----SLR 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1440 MELDKERKELAQVKsaigaqtklsddlecQKESVQQL-VDNLKVELEKERKELAKVNS-AFEAQTKLSD-DLKLQK---- 1512
Cdd:pfam05701 328 SELEKEKAELASLR---------------QREGMASIaVSSLEAELNRTKSEIALVQAkEKEAREKMVElPKQLQQaaqe 392
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 442616328 1513 -EDAQREVFLVKERLVKEKREFEVKLATlediIETLEMR--CTQMEEERATAYEQI 1565
Cdd:pfam05701 393 aEEAKSLAQAAREELRKAKEEAEQAKAA----ASTVESRleAVLKEIEAAKASEKL 444
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1252-1438 |
4.80e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 55.41 E-value: 4.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1252 LSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEA--QTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSA 1329
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1330 FEAqtkLSDDLQREKESAQQLVDN------------LKVELDKE--------------RKELAQVKSVIEAQT-KLSDDL 1382
Cdd:COG3206 242 LAA---LRAQLGSGPDALPELLQSpviqqlraqlaeLEAELAELsarytpnhpdvialRAQIAALRAQLQQEAqRILASL 318
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 442616328 1383 QRQKESAQQLVDNLKVELDKERKELAKVKsviEAQTKLSdDLQRQKESAQQLVDNL 1438
Cdd:COG3206 319 EAELEALQAREASLQAQLAQLEARLAELP---ELEAELR-RLEREVEVARELYESL 370
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
962-1838 |
5.26e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 55.57 E-value: 5.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 962 LTESQAKLEMQVAELQVELENKDtnqhsgaliKQLNDTIQNLEKVNAklseDNTVSHTVHSKLNESLLKAQKELDLRAKI 1041
Cdd:pfam01576 220 LQEQIAELQAQIAELRAQLAKKE---------EELQAALARLEEETA----QKNNALKKIRELEAQISELQEDLESERAA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1042 IENLEASERNLSMKLCELK-DLKNKLKSS----------DEKIAQIKETYEEQIKALQAKC-DMEAKKNEHLERNQNQsL 1109
Cdd:pfam01576 287 RNKAEKQRRDLGEELEALKtELEDTLDTTaaqqelrskrEQEVTELKKALEEETRSHEAQLqEMRQKHTQALEELTEQ-L 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1110 TQLKEDALencVLMSTK--LEELQAKLQEGQQLVDSQKLELDMNRKELAlvKSAYEAQTKLSDDlQRQKESGQQLVDNLK 1187
Cdd:pfam01576 366 EQAKRNKA---NLEKAKqaLESENAELQAELRTLQQAKQDSEHKRKKLE--GQLQELQARLSES-ERQRAELAEKLSKLQ 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1188 VELEKERKELahvNSAIGAQTKLSDDLEcqkESGQQLVDNLKVELEKERKELA---QVKSVIEAQTKLSDDLQREKESAQ 1264
Cdd:pfam01576 440 SELESVSSLL---NEAEGKNIKLSKDVS---SLESQLQDTQELLQEETRQKLNlstRLRQLEDERNSLQEQLEEEEEAKR 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1265 QL---VDNLKVELDKERKELAQVNSAFEA---------------------QTKLSDDLQRQKESAQQLVDNLKVELDKER 1320
Cdd:pfam01576 514 NVerqLSTLQAQLSDMKKKLEEDAGTLEAleegkkrlqrelealtqqleeKAAAYDKLEKTKNRLQQELDDLLVDLDHQR 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1321 kelaQVNSAFEAQTKLSDDLQREKE--SAQQLVDNLKVELD---KERKELAQVKSVIEAQTKLsDDLQRQKESAQQLVDN 1395
Cdd:pfam01576 594 ----QLVSNLEKKQKKFDQMLAEEKaiSARYAEERDRAEAEareKETRALSLARALEEALEAK-EELERTNKQLRAEMED 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1396 L---KVELDKERKELAKVKSVIEAQtklsddLQRQKESAQQLVDNLKMELD-KERKEL------AQVKSAIGAQTKLSDD 1465
Cdd:pfam01576 669 LvssKDDVGKNVHELERSKRALEQQ------VEEMKTQLEELEDELQATEDaKLRLEVnmqalkAQFERDLQARDEQGEE 742
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1466 lecQKESVQQLVDNLKVELEKERKELAKvnsAFEAQTKLSDDLK---LQKEDAQREvflvKERLVKEKREFEvklATLED 1542
Cdd:pfam01576 743 ---KRRQLVKQVRELEAELEDERKQRAQ---AVAAKKKLELDLKeleAQIDAANKG----REEAVKQLKKLQ---AQMKD 809
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1543 IIETLEMRCTQMEEERATAYEQINKLENrcQEKDNVkssQLQVETFKVECLHHQLKSEmatHNSLVEDLNRKLAEKVSKL 1622
Cdd:pfam01576 810 LQRELEEARASRDEILAQSKESEKKLKN--LEAELL---QLQEDLAASERARRQAQQE---RDELADEIASGASGKSALQ 881
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1623 DfvqsrlmteiaEHNQVKDQLAQitdipkvveLQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNAR-----LEHGAQ 1697
Cdd:pfam01576 882 D-----------EKRRLEARIAQ---------LEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAAERstsqkSESARQ 941
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1698 ilRMEETAREVGNKNAELCELIEF-YRNRVEALERLLLASNQELEELNSIQSNQAEGVR----DLGDTYSAAEGRQTESD 1772
Cdd:pfam01576 942 --QLERQNKELKAKLQEMEGTVKSkFKSSIAALEAKIAQLEEQLEQESRERQAANKLVRrtekKLKEVLLQVEDERRHAD 1019
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442616328 1773 QDKERYQKLALDCKILQAKYRDAKDEIKRcekkIKDQRLEMEGKLEKMKNKMRSLyTAEVTRMKEK 1838
Cdd:pfam01576 1020 QYKDQAEKGNSRMKQLKRQLEEAEEEASR----ANAARRKLQRELDDATESNESM-NREVSTLKSK 1080
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1198-1391 |
5.79e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 54.45 E-value: 5.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1198 AHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKE 1277
Cdd:COG3883 12 AFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1278 RKELAQ--------------------------VNSAFEAQTKLSDDLQRQK---ESAQQLVDNLKVELDKERKEL----A 1324
Cdd:COG3883 92 ARALYRsggsvsyldvllgsesfsdfldrlsaLSKIADADADLLEELKADKaelEAKKAELEAKLAELEALKAELeaakA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442616328 1325 QVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQ 1391
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 238
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1296-1898 |
5.85e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 5.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1296 DDLQRQKESAQQLVDnLKVELDKERKELAQVN---SAFEAQTKlsddlQREKESAQQLVDNLKVELDKERKELAQVKSVI 1372
Cdd:COG4913 245 EDAREQIELLEPIRE-LAERYAAARERLAELEylrAALRLWFA-----QRRLELLEAELEELRAELARLEAELERLEARL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1373 EAQTKLSDDLQRQKESAQ-QLVDNLKVELDKERKELAKVksvieaqtklsddlQRQKESAQQLVDNLKMELDKERKELAQ 1451
Cdd:COG4913 319 DALREELDELEAQIRGNGgDRLEQLEREIERLERELEER--------------ERRRARLEALLAALGLPLPASAEEFAA 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1452 VKSAIGAqtkLSDDLECQKESVQQLVDNLKVELEKERKELAkvnsafEAQTKLsDDLKLQKEDAQREVFLVKERLvkeKR 1531
Cdd:COG4913 385 LRAEAAA---LLEALEEELEALEEALAEAEAALRDLRRELR------ELEAEI-ASLERRKSNIPARLLALRDAL---AE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1532 EFEVKLATLEDIIETLEMRctqMEEER--------------------------ATAYEQiNKLENRcqekdnvkssqlqV 1585
Cdd:COG4913 452 ALGLDEAELPFVGELIEVR---PEEERwrgaiervlggfaltllvppehyaaaLRWVNR-LHLRGR-------------L 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1586 ETFKVECLHHQLKSEMATHNSLVedlnRKLAEKVSKLdfvQSRLMTEIAEHNQVK-----DQLAQ----IT--------- 1647
Cdd:COG4913 515 VYERVRTGLPDPERPRLDPDSLA----GKLDFKPHPF---RAWLEAELGRRFDYVcvdspEELRRhpraITragqvkgng 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1648 -----DIPKVVELQH--------RLEAETAEREEAQNKLAVVTGRLDEITRELDNAR---------LEHGAQILRMEETA 1705
Cdd:COG4913 588 trhekDDRRRIRSRYvlgfdnraKLAALEAELAELEEELAEAEERLEALEAELDALQerrealqrlAEYSWDEIDVASAE 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1706 REVGNKNAELCELIEFyRNRVEALERLLLASNQELEELNSIQSNQAEGVRDLGDTYSAAEGRQTESDQDKERYQKLALDC 1785
Cdd:COG4913 668 REIAELEAELERLDAS-SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLE 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1786 KI--LQAKYRDAKDeikrcEKKIKDQRLEMEGKLEKMKNKMRSLYTAEVTRMKEKQERDAAkSASELEALTAQNAKYEEH 1863
Cdd:COG4913 747 LRalLEERFAAALG-----DAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPA-ETADLDADLESLPEYLAL 820
|
650 660 670
....*....|....*....|....*....|....*.
gi 442616328 1864 TRKLSNQ-IVRLNEKILEQQKQHAIisTNLRHLQMQ 1898
Cdd:COG4913 821 LDRLEEDgLPEYEERFKELLNENSI--EFVADLLSK 854
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1303-1883 |
6.77e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.07 E-value: 6.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1303 ESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSD-- 1380
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEei 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1381 -DLQRQKESAQQLVDNLK---VELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLV---DNLKMELDKERKELAQVK 1453
Cdd:PRK03918 241 eELEKELESLEGSKRKLEekiRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSefyEEYLDELREIEKRLSRLE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1454 SAIGAQTKLSDDLECQKESVQqlvdnlkvELEKERKELAKVNSAFEAQTKLSDDLKLQKEDaqrevflvKERLVKEKREF 1533
Cdd:PRK03918 321 EEINGIEERIKELEEKEERLE--------ELKKKLKELEKRLEELEERHELYEEAKAKKEE--------LERLKKRLTGL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1534 EVKlaTLEDIIETLEMRCTQMEEERATAYEQINKLENRCQE-KDNV---KSSQLQVETFKVECLHHQLKSEMATHNSLVE 1609
Cdd:PRK03918 385 TPE--KLEKELEELEKAKEEIEEEISKITARIGELKKEIKElKKAIeelKKAKGKCPVCGRELTEEHRKELLEEYTAELK 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1610 DLNRKLAEKVSKLdfvqsrlmteiaehnqvKDQLAQITDIPKVVELQHRLEAETAEREEAQNklavvtgrLDEITRELDN 1689
Cdd:PRK03918 463 RIEKELKEIEEKE-----------------RKLRKELRELEKVLKKESELIKLKELAEQLKE--------LEEKLKKYNL 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1690 ARLEHGAQILR-MEETAREVGNKNAELCELIEfyrnRVEALERLLLASNQELEELNSIQSNQAEGVRDLG-DTYSAAEGR 1767
Cdd:PRK03918 518 EELEKKAEEYEkLKEKLIKLKGEIKSLKKELE----KLEELKKKLAELEKKLDELEEELAELLKELEELGfESVEELEER 593
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1768 QTESDQDKERYQKLALDCKILQAKyrdaKDEIKRCEKKIKDQRLEM---EGKLEKMKNKMRSL---YTAEVTRMKEKQ-- 1839
Cdd:PRK03918 594 LKELEPFYNEYLELKDAEKELERE----EKELKKLEEELDKAFEELaetEKRLEELRKELEELekkYSEEEYEELREEyl 669
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 442616328 1840 --ERDAAKSASELEALTAQNAKYEEHTRKLSNQIVRLNEKILEQQK 1883
Cdd:PRK03918 670 elSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK 715
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1103-1307 |
6.96e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 54.07 E-value: 6.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1103 RNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAY-EAQTKLSDDLQRQKESGQQ 1181
Cdd:COG3883 22 QKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIeERREELGERARALYRSGGS 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1182 lVDNLKVELEKErkELAHVNSAIGAQTKLSDD----LECQKESgQQLVDNLKVELEKERKELAQVKSVIEAQTKlsdDLQ 1257
Cdd:COG3883 102 -VSYLDVLLGSE--SFSDFLDRLSALSKIADAdadlLEELKAD-KAELEAKKAELEAKLAELEALKAELEAAKA---ELE 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 442616328 1258 REKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQ 1307
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAA 224
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1122-1487 |
1.23e-06 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 53.75 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1122 LMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTK-LSDDLQRQKESGQQLVDNLKvELEKERKELAHV 1200
Cdd:pfam07888 31 LLQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRReLESRVAELKEELRQSREKHE-ELEEKYKELSAS 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1201 NSAIGAQtklSDDLECQKESGQQLVdnlkVELEKERKELAQVKSVIEAqtklsdDLQREKESAQQLVDNLKVELDKERKE 1280
Cdd:pfam07888 110 SEELSEE---KDALLAQRAAHEARI----RELEEDIKTLTQRVLERET------ELERMKERAKKAGAQRKEEEAERKQL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1281 LAQVNSAFEAQTKLSDDLQRQKES-------AQQLVDNL-------------KVELDKERKELAQVNSAFEAQTKLSDDL 1340
Cdd:pfam07888 177 QAKLQQTEEELRSLSKEFQELRNSlaqrdtqVLQLQDTIttltqklttahrkEAENEALLEELRSLQERLNASERKVEGL 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1341 QREKESAQQLVDNLKVELDKERKELAQVK-SVIEAQTKLSDDLQRQKESAQQLVDNlkVELDKERKElakvksvieaqtK 1419
Cdd:pfam07888 257 GEELSSMAAQRDRTQAELHQARLQAAQLTlQLADASLALREGRARWAQERETLQQS--AEADKDRIE------------K 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1420 LSDDLQRQKESAQQLV---DNLKMELDKE-----------RKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELE 1485
Cdd:pfam07888 323 LSAELQRLEERLQEERmerEKLEVELGREkdcnrvqlsesRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQRLE 402
|
..
gi 442616328 1486 KE 1487
Cdd:pfam07888 403 TV 404
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1255-1417 |
1.52e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 51.85 E-value: 1.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1255 DLQR---EKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSA-- 1329
Cdd:COG1579 11 DLQEldsELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNke 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1330 FEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEaqtKLSDDLQRQKESAQQLVDNLKVELDKERKELAK 1409
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELA---ELEAELEEKKAELDEELAELEAELEELEAEREE 167
|
....*...
gi 442616328 1410 VKSVIEAQ 1417
Cdd:COG1579 168 LAAKIPPE 175
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1178-1860 |
3.41e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 52.60 E-value: 3.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1178 SGQQLVDNLKVELEKERK----ELAHVNSAIGAQTKLSDDLEcQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLS 1253
Cdd:PRK01156 135 VGQGEMDSLISGDPAQRKkildEILEINSLERNYDKLKDVID-MLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSH 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1254 DDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQR-QKESAQQLVDNLKVELDKERKELAQVNSAFEA 1332
Cdd:PRK01156 214 SITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTaESDLSMELEKNNYYKELEERHMKIINDPVYKN 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1333 QTKLSD--DLQREKESAQQLVDNLKVELDKERkelAQVKSVIEAQTKLSDDLQRQKEsaqqlvdnlKVELDKERKELAKV 1410
Cdd:PRK01156 294 RNYINDyfKYKNDIENKKQILSNIDAEINKYH---AIIKKLSVLQKDYNDYIKKKSR---------YDDLNNQILELEGY 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1411 KSvieaqtklsddlqrQKESAQQLVDNLKMELDKERKElaqvksaigaQTKLSDDLECQKESVQQLVDNLKVELEKERKE 1490
Cdd:PRK01156 362 EM--------------DYNSYLKSIESLKKKIEEYSKN----------IERMSAFISEILKIQEIDPDAIKKELNEINVK 417
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1491 LAKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEEratayeqINKLEN 1570
Cdd:PRK01156 418 LQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEK-------IREIEI 490
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1571 RCQEKDNVKSSQLQVETF-------KVECLHHQLKSEMATHNSLVEDLNRkLAEKVSKLDFVQSRLMTEIAEHNQVKDQ- 1642
Cdd:PRK01156 491 EVKDIDEKIVDLKKRKEYleseeinKSINEYNKIESARADLEDIKIKINE-LKDKHDKYEEIKNRYKSLKLEDLDSKRTs 569
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1643 ----LAQITDIPkvvelqhrLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCE- 1717
Cdd:PRK01156 570 wlnaLAVISLID--------IETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQEn 641
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1718 --LIEFYRNRVEALErlllasnQELEELNSIQSNQAEgvrdlgdtysaAEGRQTESDQDKERYQKLALDCKILQAKYRDA 1795
Cdd:PRK01156 642 kiLIEKLRGKIDNYK-------KQIAEIDSIIPDLKE-----------ITSRINDIEDNLKKSRKALDDAKANRARLEST 703
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1796 KDEIKRCEKKIKDQRLEMEGKLEKMKNKMRSLytAEVTRMKEKQERDAA-----KSASelEALTAQNAKY 1860
Cdd:PRK01156 704 IEILRTRINELSDRINDINETLESMKKIKKAI--GDLKRLREAFDKSGVpamirKSAS--QAMTSLTRKY 769
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
965-1360 |
3.59e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 52.61 E-value: 3.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 965 SQAKLEMQVAELQvelENKDTNQHSGALIKQLNDTIQNLEKVNAKLSEDNTVSHTVhSKLNESLLKAQKELD-LRAKIIE 1043
Cdd:PRK11281 37 TEADVQAQLDALN---KQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQL-AQAPAKLRQAQAELEaLKDDNDE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1044 NLEASERNLSmklceLKDLKNKLKSSDEKIAQIKE---TYEEQIKALQAKcdmeakknehLERNQNQ---SLTQLKEdal 1117
Cdd:PRK11281 113 ETRETLSTLS-----LRQLESRLAQTLDQLQNAQNdlaEYNSQLVSLQTQ----------PERAQAAlyaNSQRLQQ--- 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1118 ENCVLMSTKLE------ELQAKLQEGQQLVDSQkleLDMNRKELA-------LVKSAYEAQTKLSDDLQRQKESGQQLVD 1184
Cdd:PRK11281 175 IRNLLKGGKVGgkalrpSQRVLLQAEQALLNAQ---NDLQRKSLEgntqlqdLLQKQRDYLTARIQRLEHQLQLLQEAIN 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1185 NLKVEL-EKERKELAHVNSAIGAQT------------KLSDDLECQKESGQQLV-DNLKVELEKERkeLAQVKSVIEAQT 1250
Cdd:PRK11281 252 SKRLTLsEKTVQEAQSQDEAARIQAnplvaqeleinlQLSQRLLKATEKLNTLTqQNLRVKNWLDR--LTQSERNIKEQI 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1251 K-------LSDDLQREKES----------AQQLVDnLKV---ELDKERKELAQVNSAFEaqtKLsddLQRQKESAQ-QLV 1309
Cdd:PRK11281 330 SvlkgsllLSRILYQQQQAlpsadlieglADRIAD-LRLeqfEINQQRDALFQPDAYID---KL---EAGHKSEVTdEVR 402
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 442616328 1310 DNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDK 1360
Cdd:PRK11281 403 DALLQLLDERRELLDQLNKQLNNQLNLAINLQLNQQQLLSVSDSLQSTLTQ 453
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1366-1569 |
3.84e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 51.75 E-value: 3.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1366 AQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKE 1445
Cdd:COG3883 12 AFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1446 RKELAQVKSAIGA------QTKLSDDLEcQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQREv 1519
Cdd:COG3883 92 ARALYRSGGSVSYldvllgSESFSDFLD-RLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAA- 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 442616328 1520 flvKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLE 1569
Cdd:COG3883 170 ---KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAA 216
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1028-1655 |
4.20e-06 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 52.39 E-value: 4.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1028 LLKAQKELDLRAKIIENLEAsERNLSMKLCELKDLKNK-LKSSDEKIAQIKEtYEEQIKALQAKCdmeakknehlERNQN 1106
Cdd:COG5022 764 YLQALKRIKKIQVIQHGFRL-RRLVDYELKWRLFIKLQpLLSLLGSRKEYRS-YLACIIKLQKTI----------KREKK 831
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1107 QSLTQLKEDALENCVLMSTKLEELQAKLQegqqlvdsqkleLDMNRKELALVKSAYE---AQTKLSDdLQRQKESGQQL- 1182
Cdd:COG5022 832 LRETEEVEFSLKAEVLIQKFGRSLKAKKR------------FSLLKKETIYLQSAQRvelAERQLQE-LKIDVKSISSLk 898
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1183 -----VDNLKVELEKERKELAHVNSAIgaQTKLSDDLECQKESGQqlvdnLKVELEKERKELAQVKSVIEAQTKLsDDLQ 1257
Cdd:COG5022 899 lvnleLESEIIELKKSLSSDLIENLEF--KTELIARLKKLLNNID-----LEEGPSIEYVKLPELNKLHEVESKL-KETS 970
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1258 REKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKEsaqqlvdnlkvELDKERKELAQVNSAFEAQTKLS 1337
Cdd:COG5022 971 EEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTK-----------QLKELPVEVAELQSASKIISSES 1039
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1338 DDLQREKEsAQQLVDNLKVELDKERKELAQVKSVIEAQtKLSDDLQRQKESAQQLVDNLKVELDKERKE----LAKVKSV 1413
Cdd:COG5022 1040 TELSILKP-LQKLKGLLLLENNQLQARYKALKLRRENS-LLDDKQLYQLESTENLLKTINVKDLEVTNRnlvkPANVLQF 1117
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1414 IEAQTKLSDDLQRQKESAQQLVDNLKME---LDKERKELAQVKSAIGAQTKLSDDLECQKEsvqqlvdnlkvelekerKE 1490
Cdd:COG5022 1118 IVAQMIKLNLLQEISKFLSQLVNTLEPVfqkLSVLQLELDGLFWEANLEALPSPPPFAALS-----------------EK 1180
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1491 LAKVNSAFEAQTKLSD-DLKLQKEDAQREVFLVKERLVkekREFEVKLATLEDIIETLEMRCTQMEEERA-----TAYEQ 1564
Cdd:COG5022 1181 RLYQSALYDEKSKLSSsEVNDLKNELIALFSKIFSGWP---RGDKLKKLISEGWVPTEYSTSLKGFNNLNkkfdtPASMS 1257
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1565 INKLENRCQEKDNVKSSQLQVETFKVECLHHQLK-SEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEH--NQVKD 1641
Cdd:COG5022 1258 NEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQyINVGLFNALRTKASSLRWKSATEVNYNSEELDDWCREFeiSDVDE 1337
|
650
....*....|....
gi 442616328 1642 QLAQITDIPKVVEL 1655
Cdd:COG5022 1338 ELEELIQAVKVLQL 1351
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1168-1396 |
4.48e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 52.33 E-value: 4.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1168 LSDDLQRQKESGQQLVDNLKVELEKERKELAhvnsaiGAQTKLSD--------DLECQKESGQQLVDNLKVELEKERKEL 1239
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELE------EAEAALEEfrqknglvDLSEEAKLLLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1240 AQVKSVIEAqtkLSDDLQREKESAQQLVDNlkVELDKERKELAQvnsafeAQTKLSDDLQRQKESAQQLVdNLKVELDKE 1319
Cdd:COG3206 236 AEAEARLAA---LRAQLGSGPDALPELLQS--PVIQQLRAQLAE------LEAELAELSARYTPNHPDVI-ALRAQIAAL 303
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442616328 1320 RKELAQvnsafEAQtKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKsviEAQTKLSdDLQRQKESAQQLVDNL 1396
Cdd:COG3206 304 RAQLQQ-----EAQ-RILASLEAELEALQAREASLQAQLAQLEARLAELP---ELEAELR-RLEREVEVARELYESL 370
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1324-1561 |
4.77e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 51.37 E-value: 4.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1324 AQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKE 1403
Cdd:COG3883 12 AFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1404 RKELAK-------VKSVIEAQTkLSDDLQRqkesaqqlVDNLKMELDKERKELAQVKSAIgaqtklsDDLECQKESVQQL 1476
Cdd:COG3883 92 ARALYRsggsvsyLDVLLGSES-FSDFLDR--------LSALSKIADADADLLEELKADK-------AELEAKKAELEAK 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1477 VDnlkvELEKERKEL----AKVNSAFEAQTKLSDDLKLQKEDAQREvflvKERLVKEKREFEVKLATLEDIIETLEMRCT 1552
Cdd:COG3883 156 LA----ELEALKAELeaakAELEAQQAEQEALLAQLSAEEAAAEAQ----LAELEAELAAAEAAAAAAAAAAAAAAAAAA 227
|
....*....
gi 442616328 1553 QMEEERATA 1561
Cdd:COG3883 228 AAAAAAAAA 236
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1613-1888 |
4.83e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 4.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1613 RKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDipKVVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARL 1692
Cdd:COG1196 225 LEAELLLLKLRELEAELEELEAELEELEAELEELEA--ELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1693 EHGAQILRMEETAREVGNKNAELCELIEFYRNRVEALERLLLASNQELEELNSIQSNQAEGVRDLGDTYSAAEGRQTESD 1772
Cdd:COG1196 303 DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1773 QDKERYQKLALDCKILQAKYRDAKDEIKRCEKKIKDQRLEMEGKLEKMKNKMRSLytAEVTRMKEKQERDAAKSASELEA 1852
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE--EEEEEALEEAAEEEAELEEEEEA 460
|
250 260 270
....*....|....*....|....*....|....*.
gi 442616328 1853 LTAQNAKYEEHTRKLSNQIVRLNEKILEQQKQHAII 1888
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAARLLLL 496
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1222-1375 |
5.60e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 49.92 E-value: 5.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1222 QQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSA--FEAQTKLSDDLQ 1299
Cdd:COG1579 23 EHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNkeYEALQKEIESLK 102
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442616328 1300 RQKESAQQLVDNLKVELDKERKELAQVNSAFEaqtKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQ 1375
Cdd:COG1579 103 RRISDLEDEILELMERIEELEEELAELEAELA---ELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPPE 175
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
1028-1437 |
6.25e-06 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 51.38 E-value: 6.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1028 LLKAQKELDlraKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDM--EAkknehlernq 1105
Cdd:PRK04778 100 FRKAKHEIN---EIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSfgPA---------- 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1106 nqsltqlkEDALENcvlmstKLEELQAKLQEGQQLVDS----------QKLELDMN--RKELALVKSAY-EAQTKLSDDL 1172
Cdd:PRK04778 167 --------LDELEK------QLENLEEEFSQFVELTESgdyveareilDQLEEELAalEQIMEEIPELLkELQTELPDQL 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1173 QRQKESGQQLVD--------NLKVELEKERKELAHVNSAIgAQTKLsDDLECQKESGQQLVDNLKVELEKERKelAQvKS 1244
Cdd:PRK04778 233 QELKAGYRELVEegyhldhlDIEKEIQDLKEQIDENLALL-EELDL-DEAEEKNEEIQERIDQLYDILEREVK--AR-KY 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1245 VIEAQTKLSDDLQREKESAQQLVDNLKV----------ELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDnlkv 1314
Cdd:PRK04778 308 VEKNSDTLPDFLEHAKEQNKELKEEIDRvkqsytlnesELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQE---- 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1315 ELDKERKELAQVNsafEAQTKLSDDLQ--REKE-SAQQLVDNLkveldkeRKELAQVKSVIEAQ--TKLSDDLQRQKESA 1389
Cdd:PRK04778 384 ELEEILKQLEEIE---KEQEKLSEMLQglRKDElEAREKLERY-------RNKLHEIKRYLEKSnlPGLPEDYLEMFFEV 453
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 442616328 1390 QQLVDNLKVELDKERKELAKV-KSVIEAQtklsDDLQRQKESAQQLVDN 1437
Cdd:PRK04778 454 SDEIEALAEELEEKPINMEAVnRLLEEAT----EDVETLEEETEELVEN 498
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1508-1886 |
6.71e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.86 E-value: 6.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1508 LKLQKEDAQREVFLvkerLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRcqekdnvkssqlqvet 1587
Cdd:COG1196 216 RELKEELKELEAEL----LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE---------------- 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1588 fkveclHHQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDipKVVELQHRLEAETAERE 1667
Cdd:COG1196 276 ------LEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEE--ELEELEEELEELEEELE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1668 EAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELIEFYRNRVEALERLLLASNQELEELNSIQ 1747
Cdd:COG1196 348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1748 SNQAEGVRDLGDTYSAAEGRQTESDQDKERYQKLALDCKILQAKYRDAKDEIKRCEKKIKDQRLEMEGKLEKMKNKMRSL 1827
Cdd:COG1196 428 EALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFL 507
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 442616328 1828 YTAEVTRMKEKQERDAAKSASELEALTAQNAKYEEHTRKLSNQIVRLNEKILEQQKQHA 1886
Cdd:COG1196 508 EGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYL 566
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1297-1450 |
9.01e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 49.54 E-value: 9.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1297 DLQR---QKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSV-- 1371
Cdd:COG1579 11 DLQEldsELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNke 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442616328 1372 IEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELA 1450
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELA 169
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1508-1886 |
9.64e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 9.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1508 LKLQKEDAQREVFLVKERLVKekrefevklatLEDIIETLEMRCTQMEEERATA--YEQInklenrcqekdnvkssQLQV 1585
Cdd:COG1196 170 YKERKEEAERKLEATEENLER-----------LEDILGELERQLEPLERQAEKAerYREL----------------KEEL 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1586 ETFKVECLHHQLksemathnslvEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDipKVVELQHRLEAETAE 1665
Cdd:COG1196 223 KELEAELLLLKL-----------RELEAELEELEAELEELEAELEELEAELAELEAELEELRL--ELEELELELEEAQAE 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1666 REEAQNKLAVVTGRLDEITRELDNARlehgAQILRMEETAREVGNKNAELCELIEFYRNRVEALERLLLASNQELEELNS 1745
Cdd:COG1196 290 EYELLAELARLEQDIARLEERRRELE----ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1746 IQSNQAEGVRDLGDTYSAAEGRQTESDQDKERYQKLALDckiLQAKYRDAKDEIKRCEKKIKDQRLEMEGKLEKMKNKMR 1825
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEE---LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE 442
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442616328 1826 SLytAEVTRMKEKQERDAAKSASELEALTAQNAKYEEHTRKLSNQIVRLNEKILEQQKQHA 1886
Cdd:COG1196 443 AL--EEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1050-1456 |
1.20e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.54 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1050 RNLSMKLCELKDLKNKLKSSDEKIAQIKE------TYEEQIKALQAK-CDMEAKKNEHLERNQNQSLTQLKEDALENCVL 1122
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAElqeeleELEEELEELEAElEELREELEKLEKLLQLLPLYQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1123 MSTKLEELQAKLQEGQQL---VDSQKLELDMNRKELALVKSAYEAQTKLS-DDLQRQKESGQQLVDNLKVELEKERKELA 1198
Cdd:COG4717 144 LPERLEELEERLEELRELeeeLEELEAELAELQEELEELLEQLSLATEEElQDLAEELEELQQRLAELEEELEEAQEELE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1199 HVNSAIGA--QTKLSDDLECQKESGQQ----------LVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQL 1266
Cdd:COG4717 224 ELEEELEQleNELEAAALEERLKEARLllliaaallaLLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKE 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1267 VDNLKVELDK---ERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRE 1343
Cdd:COG4717 304 AEELQALPALeelEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVED 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1344 KESAQQLVDNLKvELDKERKELAQVKSVIEAQTKLS---------DDLQRQKESAQQLVDNLKVELDKERKELAKVKSVI 1414
Cdd:COG4717 384 EEELRAALEQAE-EYQELKEELEELEEQLEELLGELeellealdeEELEEELEELEEELEELEEELEELREELAELEAEL 462
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 442616328 1415 EaQTKLSDDLQRQKESAQQLVDNLKmELDKERKELAQVKSAI 1456
Cdd:COG4717 463 E-QLEEDGELAELLQELEELKAELR-ELAEEWAALKLALELL 502
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1219-1901 |
1.25e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.82 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1219 ESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDL---QREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLS 1295
Cdd:TIGR00606 189 ETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQItskEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLD 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1296 DDLQRQKESAQQLvDNLKVELDKERKELAQVNSafEAQTKLSDDLQRE-KESAQQLVDNLKV--ELDKERKELAQVKSVI 1372
Cdd:TIGR00606 269 NEIKALKSRKKQM-EKDNSELELKMEKVFQGTD--EQLNDLYHNHQRTvREKERELVDCQREleKLNKERRLLNQEKTEL 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1373 EAQTK-------------LSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQ-------TKLSDDLQRQKESAQ 1432
Cdd:TIGR00606 346 LVEQGrlqlqadrhqehiRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQedeaktaAQLCADLQSKERLKQ 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1433 QLVDNLKME--------------LDKERKELAQVKSAIGAQTKLSDDLECQKEsvqqlvdnlkvELEKERKELAKVNSAF 1498
Cdd:TIGR00606 426 EQADEIRDEkkglgrtielkkeiLEKKQEELKFVIKELQQLEGSSDRILELDQ-----------ELRKAERELSKAEKNS 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1499 EAQTKLSDDLKLQKEDAQrevflvkerLVKEKREFEVKLATLEDIIETLemrcTQME---EERATAYEQINKLENRCQEK 1575
Cdd:TIGR00606 495 LTETLKKEVKSLQNEKAD---------LDRKLRKLDQEMEQLNHHTTTR----TQMEmltKDKMDKDEQIRKIKSRHSDE 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1576 DNVKSSQLQvETFKVECLHHQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDIPKVVEL 1655
Cdd:TIGR00606 562 LTSLLGYFP-NKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESD 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1656 QHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELIEFYRNRVEALERLLLA 1735
Cdd:TIGR00606 641 LERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKK 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1736 SNQELEELnsiqsnqaegvrdlgdtYSAAEGRQTESDQDKERYQKLALDCKILQAKYRDAKDEIKRCEKKIK--DQRLEM 1813
Cdd:TIGR00606 721 KEKRRDEM-----------------LGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGtiMPEEES 783
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1814 EGKLEKMKNKMRSLYTaEVTRMKEKQERDAAKSASELEALTAQNAKYE-----EHTRKLSNQIVRLNEKILEQQKQHAII 1888
Cdd:TIGR00606 784 AKVCLTDVTIMERFQM-ELKDVERKIAQQAAKLQGSDLDRTVQQVNQEkqekqHELDTVVSKIELNRKLIQDQQEQIQHL 862
|
730
....*....|...
gi 442616328 1889 STNLRHLQMQPIS 1901
Cdd:TIGR00606 863 KSKTNELKSEKLQ 875
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
1223-1335 |
1.26e-05 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 50.11 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1223 QLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQvnsafeAQTKLSDDLQRQK 1302
Cdd:TIGR04320 247 TPIPNPPNSLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQAALATAQKELAN------AQAQALQTAQNNL 320
|
90 100 110
....*....|....*....|....*....|...
gi 442616328 1303 ESAQQLVDNLKVELDKERKELAQVNSAFEAQTK 1335
Cdd:TIGR04320 321 ATAQAALANAEARLAKAKEALANLNADLAKKQA 353
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1127-1480 |
1.45e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 50.73 E-value: 1.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1127 LEELQAKLQEGQQLVDSQKLELDMNRkelalvksayeaqtklsddlqRQKESGQQLVDNLKvelekerKELAHVNSAIGA 1206
Cdd:PRK04863 357 LEELEERLEEQNEVVEEADEQQEENE---------------------ARAEAAEEEVDELK-------SQLADYQQALDV 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1207 QtklsddlecQKESGQ-----QLVDNLKVELEKERKELAQVKSVIEAqtklsddLQREKESAQQLVDNLKVELDKERKEL 1281
Cdd:PRK04863 409 Q---------QTRAIQyqqavQALERAKQLCGLPDLTADNAEDWLEE-------FQAKEQEATEELLSLEQKLSVAQAAH 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1282 AQVNSAFEAQTKLSDDLQRqkESAQQLVDNLKVELDKERKELAQVNSafeAQTKLSDDLQR--EKESAQQLVDNLKVELD 1359
Cdd:PRK04863 473 SQFEQAYQLVRKIAGEVSR--SEAWDVARELLRRLREQRHLAEQLQQ---LRMRLSELEQRlrQQQRAERLLAEFCKRLG 547
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1360 KERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLK---VELDKERKELAKVKSV-IEAQ---TKLSDDLQRQKESAQ 1432
Cdd:PRK04863 548 KNLDDEDELEQLQEELEARLESLSESVSEARERRMALRqqlEQLQARIQRLAARAPAwLAAQdalARLREQSGEEFEDSQ 627
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 442616328 1433 QLVDNLKMELDKERkELAQVKsaigaqtklsDDLECQKESVQQLVDNL 1480
Cdd:PRK04863 628 DVTEYMQQLLERER-ELTVER----------DELAARKQALDEEIERL 664
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1331-1898 |
1.45e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 50.49 E-value: 1.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1331 EAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKEsaqqlvdnlkveldkerkelaKV 1410
Cdd:pfam05483 74 EGLSRLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENE---------------------KV 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1411 KSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKE 1490
Cdd:pfam05483 133 SLKLEEEIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLE 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1491 LA-KVNSAFEAQTKLSDDLKLQKEDAQREVFLvkerLVKEKREFEVKLATLEDIIETLEMRCTQMEEEratayeqiNKLE 1569
Cdd:pfam05483 213 MHfKLKEDHEKIQHLEEEYKKEINDKEKQVSL----LLIQITEKENKMKDLTFLLEESRDKANQLEEK--------TKLQ 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1570 NRCQEKDNVKSSQLqveTFKVECLHHQLKSEMATHNSLVEDLnrKLAEKVskLDFVQSRLMTEIAEHNQVKDQLAQITDI 1649
Cdd:pfam05483 281 DENLKELIEKKDHL---TKELEDIKMSLQRSMSTQKALEEDL--QIATKT--ICQLTEEKEAQMEELNKAKAAHSFVVTE 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1650 PK--VVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNK------NAELCELIEF 1721
Cdd:pfam05483 354 FEatTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDeklldeKKQFEKIAEE 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1722 YRNRVEALERLLLASNQELEEL----NSIQSNQAEGVRDLGDTYSAAEGRQTESDQDKERYQKLALDCKILQAKYRDAKD 1797
Cdd:pfam05483 434 LKGKEQELIFLLQAREKEIHDLeiqlTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTL 513
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1798 EIKRCEKKIKDQRLEMEGKLEKMKN----KMRSLYTAEVTRMKEKQERDAAKSASELEALTAQNAKYEehTRKLSNQIVR 1873
Cdd:pfam05483 514 ELKKHQEDIINCKKQEERMLKQIENleekEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYE--VLKKEKQMKI 591
|
570 580
....*....|....*....|....*
gi 442616328 1874 LNEKILEQQKQHAIISTNLRHLQMQ 1898
Cdd:pfam05483 592 LENKCNNLKKQIENKNKNIEELHQE 616
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
553-770 |
1.52e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 1.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 553 RECETILSCCHMKVVDIASKNNDLELDNERLNDKCAELKSIIDRGDQHLADINLQLIEKEKQIKDVGAEIQELRKRNINL 632
Cdd:TIGR02169 815 REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDEL 894
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 633 ENMLSQIADKEASAASHAQHLKQCGELLRAKYEVCRNELiaknAAQDELVRMMMVPDGETLNGR----VRQLIDLEMMHD 708
Cdd:TIGR02169 895 EAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL----SEIEDPKGEDEEIPEEELSLEdvqaELQRVEEEIRAL 970
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442616328 709 EHNKM-----YAQMLKQLNELSAKHDNMTHSHLDFVKRTE-IELETKNAQIMAFDEHNNHFDRFLTRI 770
Cdd:TIGR02169 971 EPVNMlaiqeYEEVLKRLDELKEKRAKLEEERKAILERIEeYEKKKREVFMEAFEAINENFNEIFAEL 1038
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
703-1217 |
1.65e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.50 E-value: 1.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 703 LEMMHDE---HNKMYAQMLKQL----NELSAKHDNMTHSHLDFVKRTEIELETKNAQIM-------AFDEHNNHFDRFLT 768
Cdd:pfam15921 301 LEIIQEQarnQNSMYMRQLSDLestvSQLRSELREAKRMYEDKIEELEKQLVLANSELTearterdQFSQESGNLDDQLQ 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 769 RIFTLLRSRNcpKSTTMGSATNflesmhieKRFENIEMlieGQLLSADDLKRELDD--------------LRSKNEELAK 834
Cdd:pfam15921 381 KLLADLHKRE--KELSLEKEQN--------KRLWDRDT---GNSITIDHLRRELDDrnmevqrleallkaMKSECQGQME 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 835 QNINGIIKRNKF---ITSLEVNTEKVKQYITDLEEEAFKRKQKVVQLENTLSKEQSNAKEMAQRLDIAQQEIK------D 905
Cdd:pfam15921 448 RQMAAIQGKNESlekVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITklrsrvD 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 906 YHVEAIRFINTIRDRLQqdfNGVNTPQQLGTCMTEFLKMYDQMEVRYEESSSLVEK-------LTESQAKLEMQVAELQV 978
Cdd:pfam15921 528 LKLQELQHLKNEGDHLR---NVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQhgrtagaMQVEKAQLEKEINDRRL 604
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 979 EL-ENKDTNQHSGALIKQLNDTIQNLEKVNAKL----SEDNTVSHTVHSKLNESLLKAQKELDLRAKIIENLEASERNLS 1053
Cdd:pfam15921 605 ELqEFKILKDKKDAKIRELEARVSDLELEKVKLvnagSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFR 684
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1054 MKLCELK----DLKNKLKSSDEKIAQIKETYE--EQIKALQAKCDMEAKKNEHLERNQN---QSLTQLKEDALENCVLMS 1124
Cdd:pfam15921 685 NKSEEMEtttnKLKMQLKSAQSELEQTRNTLKsmEGSDGHAMKVAMGMQKQITAKRGQIdalQSKIQFLEEAMTNANKEK 764
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1125 TKLEELQAKLQEGQQLVDSQKLELdmnRKELALVKSayeaqtklsddlqrQKESGQQLVDNLKVELEKERKELAHVNSAI 1204
Cdd:pfam15921 765 HFLKEEKNKLSQELSTVATEKNKM---AGELEVLRS--------------QERRLKEKVANMEVALDKASLQFAECQDII 827
|
570
....*....|...
gi 442616328 1205 GAQTKLSDDLECQ 1217
Cdd:pfam15921 828 QRQEQESVRLKLQ 840
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
866-1307 |
1.85e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 50.34 E-value: 1.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 866 EEAFKRKQKVVQLENTLSKEQSNAKEMAQRLDIAQQEIKDYHVEairfINTIRDRLQQDFNGVNTPQQLGTCMTEFLKMy 945
Cdd:PRK04863 286 EEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQD----YQAASDHLNLVQTALRQQEKIERYQADLEEL- 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 946 dqmEVRYEESSSLVEKLTESQAKLEMQVAELQVELENkdtnqhsgaLIKQLNDTIQNLEkvnaklsedntVSHTVHSKLN 1025
Cdd:PRK04863 361 ---EERLEEQNEVVEEADEQQEENEARAEAAEEEVDE---------LKSQLADYQQALD-----------VQQTRAIQYQ 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1026 ES---LLKAQKELDLRAKIIENLEASERNLSMKLCE----LKDLKNKLKSSDEkiaqIKETYEeqiKALQAKCdmeaKKN 1098
Cdd:PRK04863 418 QAvqaLERAKQLCGLPDLTADNAEDWLEEFQAKEQEateeLLSLEQKLSVAQA----AHSQFE---QAYQLVR----KIA 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1099 EHLERNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQQLVDSQKleldmnrkelalvksayEAQTKLSDDLQR--QK 1176
Cdd:PRK04863 487 GEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQ-----------------RAERLLAEFCKRlgKN 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1177 ESGQQLVDNLKVELEKERKEL-AHVNSAIGAQTKLSDDLEcqkesgqqlvdnlkvELEKERKELAQVKSV-IEAQ---TK 1251
Cdd:PRK04863 550 LDDEDELEQLQEELEARLESLsESVSEARERRMALRQQLE---------------QLQARIQRLAARAPAwLAAQdalAR 614
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 442616328 1252 LSDDLQREKESAQQLVDNLKVELDKERkELAQVNSAFEAQTKlsdDLQRQKESAQQ 1307
Cdd:PRK04863 615 LREQSGEEFEDSQDVTEYMQQLLERER-ELTVERDELAARKQ---ALDEEIERLSQ 666
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
315-1178 |
2.51e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 2.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 315 ESLIAEITDKLHDLRVENSELSEKLNLAGKRLLEYTDRIRFLESRV----DDLTRIVSSRDVMISSLESDKQELDkCLKE 390
Cdd:TIGR02168 259 TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKqilrERLANLERQLEELEAQLEELESKLD-ELAE 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 391 ARDDLHNRIEVLNASSDLLDCSLS-PNTTPENLASSV--IDKQLREKEHENAELKEKLLNLNNSQRELCQALSSfLQKHN 467
Cdd:TIGR02168 338 ELAELEEKLEELKEELESLEAELEeLEAELEELESRLeeLEEQLETLRSKVAQLELQIASLNNEIERLEARLER-LEDRR 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 468 idhefpvewtsssllstISAIESKFVNTLEKSTQMKKECDVQSVCVEKLLEkckllsvslgcqpkELDGFEATIPEAMES 547
Cdd:TIGR02168 417 -----------------ERLQQEIEELLKKLEEAELKELQAELEELEEELE--------------ELQEELERLEEALEE 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 548 GFESSRECETILscchmkvvdiasknNDLELDNERLNDKCAELKSIIDRGDQHLADINlQLIEKEKQIKDVGAEIQELrk 627
Cdd:TIGR02168 466 LREELEEAEQAL--------------DAAERELAQLQARLDSLERLQENLEGFSEGVK-ALLKNQSGLSGILGVLSEL-- 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 628 rnINLENMLSqiADKEASAASHAQHLkqcgellrakyeVCRNELIAKNA----AQDELVRMMMVPdGETLNGRVRQLIDL 703
Cdd:TIGR02168 529 --ISVDEGYE--AAIEAALGGRLQAV------------VVENLNAAKKAiaflKQNELGRVTFLP-LDSIKGTEIQGNDR 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 704 EMMHDEhnKMYAQMLKQLNELSAKHDNMTHSHLDFVKRTEiELETKNAQIMAFDEHNnhfdRFLTRIFTLLRSRNcpkST 783
Cdd:TIGR02168 592 EILKNI--EGFLGVAKDLVKFDPKLRKALSYLLGGVLVVD-DLDNALELAKKLRPGY----RIVTLDGDLVRPGG---VI 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 784 TMGSATNFLESMHIEKRFENIEMLIEGQLLSADDLKRELDDLRSKNEELAKQningiikrnkfitslevntekvkqyITD 863
Cdd:TIGR02168 662 TGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEE-------------------------LEQ 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 864 LEEEAFKRKQKVVQLENTLSKEQSNAKEMAQRLDIAQQEIKDYHVEairfINTIRDRLQQDFngvntpQQLGTCMTEFlk 943
Cdd:TIGR02168 717 LRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE----IEELEERLEEAE------EELAEAEAEI-- 784
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 944 myDQMEVRYEESSSLVEKLTESQAKLEMQVAELQVELENKDTnqhsgalikqlndTIQNLEKVNAKLSEDNTVSHTVHSK 1023
Cdd:TIGR02168 785 --EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE-------------RLESLERRIAATERRLEDLEEQIEE 849
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1024 LNESLLKAQKEldlrakiIENLEASERNLSMklcELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKcDMEAKKNEHLER 1103
Cdd:TIGR02168 850 LSEDIESLAAE-------IEELEELIEELES---ELEALLNERASLEEALALLRSELEELSEELREL-ESKRSELRRELE 918
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442616328 1104 NQNQSLTQLKedalencvlmsTKLEELQAKLQEGQ-QLVDSQKLELDM-NRKELALVKSAYEAQTKLsDDLQRQKES 1178
Cdd:TIGR02168 919 ELREKLAQLE-----------LRLEGLEVRIDNLQeRLSEEYSLTLEEaEALENKIEDDEEEARRRL-KRLENKIKE 983
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
591-1405 |
2.86e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 50.05 E-value: 2.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 591 KSIIDRGDQHLADINLQLIEKEKQIKDVGAEIQELRKRNINLENMLSQIADKEASAASHAQHLKQCGELLRakyeVCRNe 670
Cdd:TIGR01612 557 KKLIHEIKKELEEENEDSIHLEKEIKDLFDKYLEIDDEIIYINKLKLELKEKIKNISDKNEYIKKAIDLKK----IIEN- 631
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 671 liaKNAAQDELVRM--MMVPDGETLNGRVRQLIDLEMmhdehNKMYAQMLKQL-NELSAkhdnmthshldFVKRTEIELE 747
Cdd:TIGR01612 632 ---NNAYIDELAKIspYQVPEHLKNKDKIYSTIKSEL-----SKIYEDDIDALyNELSS-----------IVKENAIDNT 692
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 748 TKNAQImafDEHNNHFDRFLTRIFTLLRSRNCPKSTTMGSATNFLESMHIEkrfenIEMLIEGQLlsADDLKRELDDLRS 827
Cdd:TIGR01612 693 EDKAKL---DDLKSKIDKEYDKIQNMETATVELHLSNIENKKNELLDIIVE-----IKKHIHGEI--NKDLNKILEDFKN 762
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 828 KNEELAkQNINGIIKRNkfitslevntekvkqyitdleEEAFKRKQKVVQLENTLSkEQSNAKemaqrlDIAQQEIKDYH 907
Cdd:TIGR01612 763 KEKELS-NKINDYAKEK---------------------DELNKYKSKISEIKNHYN-DQINID------NIKDEDAKQNY 813
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 908 VEAIRFINTIRDRLQQDFNGVNTPQQLGTCMTEFLKMYDQMEVRYEES-SSLVEKLTESQAKLEMQVAELQVELENKDTN 986
Cdd:TIGR01612 814 DKSKEYIKTISIKEDEIFKIINEMKFMKDDFLNKVDKFINFENNCKEKiDSEHEQFAELTNKIKAEISDDKLNDYEKKFN 893
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 987 QhSGALIKQLNDTIQ-------NLEKVNA--KLSEDNTVS----HTVHSKLNESLLKaqkeldlRAKIIENLEASErnls 1053
Cdd:TIGR01612 894 D-SKSLINEINKSIEeeyqninTLKKVDEyiKICENTKESiekfHNKQNILKEILNK-------NIDTIKESNLIE---- 961
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1054 mklcelKDLKNKLKSS-DEKIAQIKETYEEqikalQAKCDMEAKKNEHLernqnQSLTQLKEDalencvLMSTKLEELQA 1132
Cdd:TIGR01612 962 ------KSYKDKFDNTlIDKINELDKAFKD-----ASLNDYEAKNNELI-----KYFNDLKAN------LGKNKENMLYH 1019
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1133 KLQEGQQLVDS--QKLElDMNRK----ELALVKSAYeaqtKLSDDLqrQKESGQQLVDNLKVELEKERKELAHVNSaIGA 1206
Cdd:TIGR01612 1020 QFDEKEKATNDieQKIE-DANKNipniEIAIHTSIY----NIIDEI--EKEIGKNIELLNKEILEEAEINITNFNE-IKE 1091
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1207 QTKLSDDLECQKESGQQLVDnlkvELEKERKELAQVKSVIEAQTKlsdDLQREKESAQQLVDNLKVELDKERKelaqvns 1286
Cdd:TIGR01612 1092 KLKHYNFDDFGKEENIKYAD----EINKIKDDIKNLDQKIDHHIK---ALEEIKKKSENYIDEIKAQINDLED------- 1157
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1287 afEAQTKLSDDLQRQKESAQQlvdNLKVELDKERKELAQVNSAFEAQTKLSDD---LQREKESAQQLVDNL-KVELDKER 1362
Cdd:TIGR01612 1158 --VADKAISNDDPEEIEKKIE---NIVTKIDKKKNIYDEIKKLLNEIAEIEKDktsLEEVKGINLSYGKNLgKLFLEKID 1232
|
810 820 830 840
....*....|....*....|....*....|....*....|...
gi 442616328 1363 KELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERK 1405
Cdd:TIGR01612 1233 EEKKKSEHMIKAMEAYIEDLDEIKEKSPEIENEMGIEMDIKAE 1275
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1231-1801 |
2.98e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 2.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1231 ELEKERKELAQVKSVIEAQTklSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQ-QLV 1309
Cdd:COG4913 263 RYAAARERLAELEYLRAALR--LWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGgDRL 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1310 DNLKVELDKERKELAQVnsafeaqtklsddlQREKESAQQLVDNLKVELDKERKELAQVKSVIEAqtkLSDDLQRQKESA 1389
Cdd:COG4913 341 EQLEREIERLERELEER--------------ERRRARLEALLAALGLPLPASAEEFAALRAEAAA---LLEALEEELEAL 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1390 QQLVDNLKVELDKERKELAKVKSVIEAqtklsddLQRQK----ESAQQLVDNLKMELDKERK------ELAQVKSaigaq 1459
Cdd:COG4913 404 EEALAEAEAALRDLRRELRELEAEIAS-------LERRKsnipARLLALRDALAEALGLDEAelpfvgELIEVRP----- 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1460 tklsDDLECQKeSVQQLVDNLKVELEKERKELAKVNSAFEaQTKLSDDLKLQK-----EDAQREVF----LVKERLVKEK 1530
Cdd:COG4913 472 ----EEERWRG-AIERVLGGFALTLLVPPEHYAAALRWVN-RLHLRGRLVYERvrtglPDPERPRLdpdsLAGKLDFKPH 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1531 --REF-EVKLATLEDII--ETLE-MRCTQMeeeRATAYEQINKLENRCQEKDNVK---------SSQLQVETFKVEclHH 1595
Cdd:COG4913 546 pfRAWlEAELGRRFDYVcvDSPEeLRRHPR---AITRAGQVKGNGTRHEKDDRRRirsryvlgfDNRAKLAALEAE--LA 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1596 QLKSEMATHNSLVEDLNRKLA---------EKVSKLDFVQSRLMTEIAEHNQVKDQLAQIT-DIPKVVELQHRLEAETAE 1665
Cdd:COG4913 621 ELEEELAEAEERLEALEAELDalqerrealQRLAEYSWDEIDVASAEREIAELEAELERLDaSSDDLAALEEQLEELEAE 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1666 REEAQNKLAVVTG-------RLDEITRELDNARLEHGA--------QILRMEETAREVGNKNAELcELIEFYRNRVEALE 1730
Cdd:COG4913 701 LEELEEELDELKGeigrlekELEQAEEELDELQDRLEAaedlarleLRALLEERFAAALGDAVER-ELRENLEERIDALR 779
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1731 RLLLASNQELEEL-NSIQSNQAEGVRDLGDTYSAAEG------RQTESD--QDKERYQKLALDCKI-----LQAKYRDAK 1796
Cdd:COG4913 780 ARLNRAEEELERAmRAFNREWPAETADLDADLESLPEylalldRLEEDGlpEYEERFKELLNENSIefvadLLSKLRRAI 859
|
....*
gi 442616328 1797 DEIKR 1801
Cdd:COG4913 860 REIKE 864
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1387-1898 |
2.99e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.68 E-value: 2.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1387 ESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSD-- 1464
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEei 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1465 -DLECQKESVQQLVDNLK---VELEKERKELAKVNSAFEAQTKLSDDLKlQKEDAQREVFLVKERLVKEKREFEVKLATL 1540
Cdd:PRK03918 241 eELEKELESLEGSKRKLEekiRELEERIEELKKEIEELEEKVKELKELK-EKAEEYIKLSEFYEEYLDELREIEKRLSRL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1541 EDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKSSQLQVETFK-VECLHHQLKSEMATHNslVEDLNRKL---- 1615
Cdd:PRK03918 320 EEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKaKKEELERLKKRLTGLT--PEKLEKELeele 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1616 ------AEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDIPKV----VELQHR---LEAETAEREEAQNKLAVVTGRLDE 1682
Cdd:PRK03918 398 kakeeiEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVcgreLTEEHRkelLEEYTAELKRIEKELKEIEEKERK 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1683 ITRELDNAR--LEHGAQILRMEETAREVGNKNAEL-----------CELIEFYRNRVEALERLLLASNQELEELNSIQSN 1749
Cdd:PRK03918 478 LRKELRELEkvLKKESELIKLKELAEQLKELEEKLkkynleelekkAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKK 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1750 QAEGVRDLGDTYSAAEGRQTE--------SDQDKERYQKLaldcKILQAKY---RDAKDEIKRCEKKIKDQRLEMEGKLE 1818
Cdd:PRK03918 558 LAELEKKLDELEEELAELLKEleelgfesVEELEERLKEL----EPFYNEYlelKDAEKELEREEKELKKLEEELDKAFE 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1819 KMKNKMRSLytaevtRMKEKQERDAAKSASELEaltaqNAKYEEHTRKLSNQIVRLNEKILEQQKQHAIISTNLRHLQMQ 1898
Cdd:PRK03918 634 ELAETEKRL------EELRKELEELEKKYSEEE-----YEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEE 702
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1382-1878 |
3.37e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.25 E-value: 3.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1382 LQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTK 1461
Cdd:TIGR04523 45 IKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEV 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1462 LSDDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREF---EVKLA 1538
Cdd:TIGR04523 125 ELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLlklELLLS 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1539 TLEDIIE---TLEMRCTQMEEERATAYEQINKLENRCQEKDNV-KSSQLQVETFKVEclHHQLKSEMATHNSLVEDLNRK 1614
Cdd:TIGR04523 205 NLKKKIQknkSLESQISELKKQNNQLKDNIEKKQQEINEKTTEiSNTQTQLNQLKDE--QNKIKKQLSEKQKELEQNNKK 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1615 LAEKVSKLdfvqSRLMTEIAEHNQVKDQlaqitDIPKvvELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARleh 1694
Cdd:TIGR04523 283 IKELEKQL----NQLKSEISDLNNQKEQ-----DWNK--ELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLK--- 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1695 gaqilrmeetaREVGNKNAELCELIEFYRNRVEALERLLLASNQELEELNSIQSNQAEGVRDLGDTYSAAEGRQTESDQD 1774
Cdd:TIGR04523 349 -----------KELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKL 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1775 KERYQKLALDCKILQAKYRDAKDEIKRCEKKIKDQRLEME--GKLEKMKNKMRSLYTAEVTRMK---EKQERDAAKSASE 1849
Cdd:TIGR04523 418 QQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKnlDNTRESLETQLKVLSRSINKIKqnlEQKQKELKSKEKE 497
|
490 500
....*....|....*....|....*....
gi 442616328 1850 LEALTAQNAKYEEHTRKLSNQIVRLNEKI 1878
Cdd:TIGR04523 498 LKKLNEEKKELEEKVKDLTKKISSLKEKI 526
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
565-1187 |
5.07e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.86 E-value: 5.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 565 KVVDIASKNNDLELDNERLNDKCAELKSIIDRGDQHLADINLQLIEKEKQIKDVGAEIQELRKRNINLENMLSQIADKEA 644
Cdd:TIGR04523 153 ELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKD 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 645 SAASHAQHLKQcgelLRAKYEVCRNELIAKNAAQDELvrmmmvpdgetlngrVRQLIDLEMMHDEHNKMYAQMLKQLNEL 724
Cdd:TIGR04523 233 NIEKKQQEINE----KTTEISNTQTQLNQLKDEQNKI---------------KKQLSEKQKELEQNNKKIKELEKQLNQL 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 725 SA--------KHDNMTHSHLDFVKRTEIELETKNAQImafDEHNNHFDRFLTRIFTLLRSRNcPKSTTMGSATNFLESMH 796
Cdd:TIGR04523 294 KSeisdlnnqKEQDWNKELKSELKNQEKKLEEIQNQI---SQNNKIISQLNEQISQLKKELT-NSESENSEKQRELEEKQ 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 797 IEkrFENIEMLIEGQLLSADDLKRELDDLRSKNEELAKQNINGIIKrnkfITSLEVNTEKVKQYITDLEEEAFKRKQKVV 876
Cdd:TIGR04523 370 NE--IEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQ----IKKLQQEKELLEKEIERLKETIIKNNSEIK 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 877 QLENTLSKEQSNAKEMAQRLDIAQQEIKDYHVEairfINTIRDRLQQdfngvnTPQQLGTCMTEFLKMYDQ--------- 947
Cdd:TIGR04523 444 DLTNQDSVKELIIKNLDNTRESLETQLKVLSRS----INKIKQNLEQ------KQKELKSKEKELKKLNEEkkeleekvk 513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 948 -MEVRYEESSSLVEKLTESQAKLEMQVAELQVELENKDTNQHSGALIKQLNDTIQNLEkvnaKLSEDNTVSHTVHSKLNE 1026
Cdd:TIGR04523 514 dLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIE----ELKQTQKSLKKKQEEKQE 589
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1027 SLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCD-MEAKKNEHLERNQ 1105
Cdd:TIGR04523 590 LIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKeIRNKWPEIIKKIK 669
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1106 NqsltqLKEDALENCVLMSTKLEELQAKLQEgqqlvdsqKLELDMNRKELALVKSAYEaqtKLSDDLQRQKESGQQLVDN 1185
Cdd:TIGR04523 670 E-----SKTKIDDIIELMKDWLKELSLHYKK--------YITRMIRIKDLPKLEEKYK---EIEKELKKLDEFSKELENI 733
|
..
gi 442616328 1186 LK 1187
Cdd:TIGR04523 734 IK 735
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1256-1896 |
5.76e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.48 E-value: 5.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1256 LQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTK 1335
Cdd:TIGR04523 45 IKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEV 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1336 LSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVK---S 1412
Cdd:TIGR04523 125 ELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLElllS 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1413 VIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIG-AQTKLSDDLECQKESVQQLVDNLKvELEKERKEL 1491
Cdd:TIGR04523 205 NLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISnTQTQLNQLKDEQNKIKKQLSEKQK-ELEQNNKKI 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1492 AKVNSAF-EAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREFEVKLATLEDIIETLEmrctqmeeeratayEQINKLEN 1570
Cdd:TIGR04523 284 KELEKQLnQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLN--------------EQISQLKK 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1571 RCQEKDNVKSSqlqvetfkveclhhqlksemathnslvedLNRKLAEKVSKLDfvqsrlmTEIAEHNQVKDQLAQITDip 1650
Cdd:TIGR04523 350 ELTNSESENSE-----------------------------KQRELEEKQNEIE-------KLKKENQSYKQEIKNLES-- 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1651 KVVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARlehgAQILRMEETAREVGNKNAELCELIEFYRNRVEALE 1730
Cdd:TIGR04523 392 QINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLK----ETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLE 467
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1731 RLLLASNQELeelNSIQSNQaegvrdlgdtysaaEGRQTESDQDKERYQKLALDCKILQAKYRDAKDEIKRCEKKIKD-- 1808
Cdd:TIGR04523 468 TQLKVLSRSI---NKIKQNL--------------EQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKle 530
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1809 -QRLEMEGKLEKMKNKMRSLYTAEVTRMKEKQERDAAKSASEL----EALTAQNAKYEEHTRKLSNQIVRLNEKILEQQK 1883
Cdd:TIGR04523 531 sEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELkqtqKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEK 610
|
650
....*....|...
gi 442616328 1884 QHAIISTNLRHLQ 1896
Cdd:TIGR04523 611 KISSLEKELEKAK 623
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1098-1458 |
7.01e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.41 E-value: 7.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1098 NEHLERNQNQSLTQLKedaLENCVLmstKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAY-EAQTKLSD-----D 1171
Cdd:COG3096 333 SDHLNLVQTALRQQEK---IERYQE---DLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVdSLKSQLADyqqalD 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1172 LQrQKESGQ--QLVDnlkvELEKERKELAhvnsaigaqtklSDDLEcqkesgqqlVDNLKVELEKERKELAQV-KSVIEA 1248
Cdd:COG3096 407 VQ-QTRAIQyqQAVQ----ALEKARALCG------------LPDLT---------PENAEDYLAAFRAKEQQAtEEVLEL 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1249 QTKLS--DDLQREKESAQQLVDNLKVELDKER---------------KELAQVNSAFEAQTKLSDDLQRQKESAQQLVDN 1311
Cdd:COG3096 461 EQKLSvaDAARRQFEKAYELVCKIAGEVERSQawqtarellrryrsqQALAQRLQQLRAQLAELEQRLRQQQNAERLLEE 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1312 LKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDK---ERKELAQVKSV-IEAQ---TKLSDDLQR 1384
Cdd:COG3096 541 FCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQlraRIKELAARAPAwLAAQdalERLREQSGE 620
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 442616328 1385 QKESAQQLVDNLKVELDKERkelakvksvieAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGA 1458
Cdd:COG3096 621 ALADSQEVTAAMQQLLERER-----------EATVERDELAARKQALESQIERLSQPGGAEDPRLLALAERLGG 683
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1127-1354 |
7.70e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 7.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1127 LEELQAKLQEGQQLVDSQ--KLELDMNRKELALvkSAYEAQTKLSDdLQRQKESGQQLVDNLKVELEKERKELAHVNSAI 1204
Cdd:COG3206 166 LELRREEARKALEFLEEQlpELRKELEEAEAAL--EEFRQKNGLVD-LSEEAKLLLQQLSELESQLAEARAELAEAEARL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1205 GAqtkLSDDLECQKESGQQLVDNlkVELEKERKELAQvksvieAQTKLSDDLQREKESAQQLVdNLKVELDKERKELAQv 1284
Cdd:COG3206 243 AA---LRAQLGSGPDALPELLQS--PVIQQLRAQLAE------LEAELAELSARYTPNHPDVI-ALRAQIAALRAQLQQ- 309
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1285 nsafEAQtKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNsafEAQTKLSdDLQREKESAQQLVDNL 1354
Cdd:COG3206 310 ----EAQ-RILASLEAELEALQAREASLQAQLAQLEARLAELP---ELEAELR-RLEREVEVARELYESL 370
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
877-1430 |
8.46e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.12 E-value: 8.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 877 QLENTLSKEQSNAKEMAQRLDIAQQEIKDYHVEAIRFINTIRDRLQQDFNGVNTPQQLGTCMTEFLKMyDQMEVRYEESS 956
Cdd:TIGR00606 574 QLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDL-ERLKEEIEKSS 652
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 957 SLVEKLTESQAKLEMQVAELQvelenkDTNQHSGALIKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNESLLKAQKELD 1036
Cdd:TIGR00606 653 KQRAMLAGATAVYSQFITQLT------DENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRD 726
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1037 LrakIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAkcdmeakknehlernqnqslTQLKEDA 1116
Cdd:TIGR00606 727 E---MLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGT--------------------IMPEEES 783
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1117 LENCVLMSTKLEELQAKLQE-----GQQLVDSQKLELDMN----RKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLK 1187
Cdd:TIGR00606 784 AKVCLTDVTIMERFQMELKDverkiAQQAAKLQGSDLDRTvqqvNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLK 863
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1188 VELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLV 1267
Cdd:TIGR00606 864 SKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKV 943
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1268 DNLKVELDKERKELAQVnsafeaQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNsafEAQTKLSDDLQREKESA 1347
Cdd:TIGR00606 944 NDIKEKVKNIHGYMKDI------ENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKIN---EDMRLMRQDIDTQKIQE 1014
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1348 QQLVDNLKveLDKERKELAQVKSVIEAQTKLSDDLQ--RQKESAQQLVDNLKVELDKERKELAKVK----SVIEAQTKLS 1421
Cdd:TIGR00606 1015 RWLQDNLT--LRKRENELKEVEEELKQHLKEMGQMQvlQMKQEHQKLEENIDLIKRNHVLALGRQKgyekEIKHFKKELR 1092
|
....*....
gi 442616328 1422 DDLQRQKES 1430
Cdd:TIGR00606 1093 EPQFRDAEE 1101
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
1176-1487 |
1.10e-04 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 46.84 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1176 KESGQQLVDNLKVELEKERkELAHVNSAIgaQTKLSDdLECQKESGQQLVDNLKvelekeRKELAQVKSVIEAQTKLSDD 1255
Cdd:pfam00038 3 KEQLQELNDRLASYIDKVR-FLEQQNKLL--ETKISE-LRQKKGAEPSRLYSLY------EKEIEDLRRQLDTLTVERAR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1256 LQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKElaqvnsaFEAQTK 1335
Cdd:pfam00038 73 LQLELDNLRLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKN-------HEEEVR 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1336 lsdDLQREKESAQQLV---DNLKVELDKERKEL-AQ-----VKSVIEA----QTKLsDDLQRQKESAQQLVDNLKVELDK 1402
Cdd:pfam00038 146 ---ELQAQVSDTQVNVemdAARKLDLTSALAEIrAQyeeiaAKNREEAeewyQSKL-EELQQAAARNGDALRSAKEEITE 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1403 ERKELAKVKSVIEAQTKLSDDLQRQKESAQqlvDNLKMELDKERKELAQVKSAIgaqTKLSDDLECQKESVQQLVdNLKV 1482
Cdd:pfam00038 222 LRRTIQSLEIELQSLKKQKASLERQLAETE---ERYELQLADYQELISELEAEL---QETRQEMARQLREYQELL-NVKL 294
|
....*
gi 442616328 1483 ELEKE 1487
Cdd:pfam00038 295 ALDIE 299
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1223-1569 |
1.18e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 46.82 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1223 QLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQK 1302
Cdd:COG4372 24 ILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEEL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1303 ESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEA--QTKLSD 1380
Cdd:COG4372 104 ESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQAlsEAEAEQ 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1381 DLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQT 1460
Cdd:COG4372 184 ALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEEL 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1461 KLSDDLEcqKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREFEVKLATL 1540
Cdd:COG4372 264 ELAILVE--KDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELAD 341
|
330 340
....*....|....*....|....*....
gi 442616328 1541 EDIIETLEMRCTQMEEERATAYEQINKLE 1569
Cdd:COG4372 342 LLQLLLVGLLDNDVLELLSKGAEAGVADG 370
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
946-1353 |
1.34e-04 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 47.16 E-value: 1.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 946 DQMEVRYEESSSLVEKLTESQAKLEMQVAELQVELEN--KDTNQHS---GALIKQLNDTIQNLEKVNAKLSEDNTVSHtv 1020
Cdd:pfam06160 96 DDIEEDIKQILEELDELLESEEKNREEVEELKDKYRElrKTLLANRfsyGPAIDELEKQLAEIEEEFSQFEELTESGD-- 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1021 HSKLNESLLKAQKELDlrakiienleasernlsmklcelkDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEH 1100
Cdd:pfam06160 174 YLEAREVLEKLEEETD------------------------ALEELMEDIPPLYEELKTELPDQLEELKEGYREMEEEGYA 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1101 LERNQNQSLTQLKEDALENCV--LMSTKLEELQAKLQEGQQLVDsqklEL-DMNRKELALVKSAYEAQTKLSDDLQRQKE 1177
Cdd:pfam06160 230 LEHLNVDKEIQQLEEQLEENLalLENLELDEAEEALEEIEERID----QLyDLLEKEVDAKKYVEKNLPEIEDYLEHAEE 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1178 SGQQLvdNLKVELEKERKELAH--VNSAIGAQTKLS------DDLECQKESGQQLVDNLKVELEKERKELAQVKsviEAQ 1249
Cdd:pfam06160 306 QNKEL--KEELERVQQSYTLNEneLERVRGLEKQLEelekryDEIVERLEEKEVAYSELQEELEEILEQLEEIE---EEQ 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1250 TKLSDDLQ--REKES-AQQLVDNLKVELDKERKELAQVNsafeaQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQV 1326
Cdd:pfam06160 381 EEFKESLQslRKDELeAREKLDEFKLELREIKRLVEKSN-----LPGLPESYLDYFFDVSDEIEDLADELNEVPLNMDEV 455
|
410 420
....*....|....*....|....*..
gi 442616328 1327 NSAFEaqtKLSDDLQREKESAQQLVDN 1353
Cdd:pfam06160 456 NRLLD---EAQDDVDTLYEKTEELIDN 479
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
1190-1479 |
1.35e-04 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 46.92 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1190 LEKERKELAHVNSAIGAQTKLSDDLECQKESGQ-------QLVDNLKVELEKERKElaqvkSVIEAQTKLSDDLQREKES 1262
Cdd:pfam05262 136 LTKENAGLARRYDQWPGKTQIVIPLKKNILSGNvsdvdtdSISDKKVVEALREDNE-----KGVNFRRDMTDLKERESQE 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1263 AQQLVDNLKVELDKERKELA----QVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQvNSAFEAQtKLSD 1338
Cdd:pfam05262 211 DAKRAQQLKEELDKKQIDADkaqqKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAE-NQKREIE-KAQI 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1339 DLQREKESAQQLVDNLKVELDKERKELAQV--KSVIEAQTKL---SDDLQRQKESAQQLVDNLKVELDKERKELAKVKsV 1413
Cdd:pfam05262 289 EIKKNDEEALKAKDHKAFDLKQESKASEKEaeDKELEAQKKRepvAEDLQKTKPQVEAQPTSLNEDAIDSSNPVYGLK-V 367
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442616328 1414 IEAQTKLSD----DLQ---RQKESAQQLVDNlkMELDKERKELAQVKSAIG-AQTKLSD----DLECQKESVQQLVDN 1479
Cdd:pfam05262 368 VDPITNLSElvliDLKtevRLRESAQQTIRR--RGLYEREKDLVAIAITSGnAKLQLVDidlkNLEVIKESNFEIAKN 443
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1679-1904 |
1.37e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1679 RLDEITRELDNARLEHGAQILRMEETAREVGNKNAElcelIEFYRNRVEALERLLLASNQELEELNSIQSNQAEGVRDLG 1758
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAE----LEELRLELEELELELEEAQAEEYELLAELARLEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1759 DTYSAAEGRQTESDQDKERyqklaldckiLQAKYRDAKDEIKRCEKKIKDQRLEMEgKLEKMKNKMRSLYTAEVTRMKEK 1838
Cdd:COG1196 309 ERRRELEERLEELEEELAE----------LEEELEELEEELEELEEELEEAEEELE-EAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442616328 1839 QERDAAKSASELEALTAQnAKYEEHTRKLSNQIVRLNEKILEQQKQHAIISTNLRHLQMQPISETK 1904
Cdd:COG1196 378 EEELEELAEELLEALRAA-AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE 442
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
1259-1513 |
1.47e-04 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 46.45 E-value: 1.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1259 EKESAQQLVDNLKVELDKERkELAQVNSAFEAQTKLS-------------------DDLQRQKESAQQLVDNLKVELDKE 1319
Cdd:pfam00038 2 EKEQLQELNDRLASYIDKVR-FLEQQNKLLETKISELrqkkgaepsrlyslyekeiEDLRRQLDTLTVERARLQLELDNL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1320 RKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNL---KVELDKE----RKELAQVKSVIEAQTKlsdDLQRQKESAQQL 1392
Cdd:pfam00038 81 RLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEAtlaRVDLEAKieslKEELAFLKKNHEEEVR---ELQAQVSDTQVN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1393 V---DNLKVELD---------------KERKEL-----AKVKSVIEAQTKLSDDLQRQKESAQQL---VDNLKMELDKER 1446
Cdd:pfam00038 158 VemdAARKLDLTsalaeiraqyeeiaaKNREEAeewyqSKLEELQQAAARNGDALRSAKEEITELrrtIQSLEIELQSLK 237
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442616328 1447 KELAQVKSAIgaqTKLSDDLECQKESVQQLVDNLKVELEKERKELAKVNSafEAQTKLSDDLKLQKE 1513
Cdd:pfam00038 238 KQKASLERQL---AETEERYELQLADYQELISELEAELQETRQEMARQLR--EYQELLNVKLALDIE 299
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
994-1209 |
1.47e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.75 E-value: 1.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 994 KQLNDTIQNLEKVNAKLSedntvshtvhsKLNESLLKAQKELDlraKIIENLEASERnlsmklcELKDLKNKLKSSDEKI 1073
Cdd:COG3883 23 KELSELQAELEAAQAELD-----------ALQAELEELNEEYN---ELQAELEALQA-------EIDKLQAEIAEAEAEI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1074 AQIKETYEEQIKALQakcdmeakknehLERNQNQSLTQLKE-----DALENCVLMSTKLE---ELQAKLQEGQQLVDSQK 1145
Cdd:COG3883 82 EERREELGERARALY------------RSGGSVSYLDVLLGsesfsDFLDRLSALSKIADadaDLLEELKADKAELEAKK 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 442616328 1146 LELDMNRKELALVKSAYEAQTKlsdDLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTK 1209
Cdd:COG3883 150 AELEAKLAELEALKAELEAAKA---ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEA 210
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1339-1493 |
1.73e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.69 E-value: 1.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1339 DLQR---EKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIE 1415
Cdd:COG1579 11 DLQEldsELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKE 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442616328 1416 AQtklsdDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAK 1493
Cdd:COG1579 91 YE-----ALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA 163
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1672-1899 |
1.77e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1672 KLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELIEFYRN---RVEALERLLLASNQELEELNSIQS 1748
Cdd:TIGR02168 226 ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSEleeEIEELQKELYALANEISRLEQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1749 NQAEGVRDLGDTYSAAEGRQTESDQDKERYQKLALDckiLQAKYRDAKDEIKRCEKKIKdqrlEMEGKLEKMKNKMRSLy 1828
Cdd:TIGR02168 306 ILRERLANLERQLEELEAQLEELESKLDELAEELAE---LEEKLEELKEELESLEAELE----ELEAELEELESRLEEL- 377
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442616328 1829 taevtrmKEKQERDAAKSASELEALTAQNakyeehtrklsNQIVRLNEKILEQQKQHAIISTNLRHLQMQP 1899
Cdd:TIGR02168 378 -------EEQLETLRSKVAQLELQIASLN-----------NEIERLEARLERLEDRRERLQQEIEELLKKL 430
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
1221-1571 |
1.92e-04 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 46.98 E-value: 1.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1221 GQQLVDNLKvELEKERKELAQVKSVIEAQTKLSDDLQREKesaQQLVDNLKVELDKerKELAQVNSAF-EAQTKLSDDLQ 1299
Cdd:pfam13166 88 GEESIEIQE-KIAKLKKEIKDHEEKLDAAEANLQKLDKEK---EKLEADFLDECWK--KIKRKKNSALsEALNGFKYEAN 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1300 RQ----KESAQQLVDNLKVELDKERKE-LAQVNSafEAQTKLS---------DDLQREKESAQQLVdNLKVELDKERKEL 1365
Cdd:pfam13166 162 FKsrllREIEKDNFNAGVLLSDEDRKAaLATVFS--DNKPEIApltfnvidfDALEKAEILIQKVI-GKSSAIEELIKNP 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1366 AQ---VKSVIE-----------AQTKLSDDLQRQKESA-----QQLVDNLKVELDK----ERKELAKVKSVIEAQTKLS- 1421
Cdd:pfam13166 239 DLadwVEQGLElhkahldtcpfCGQPLPAERKAALEAHfddefTEFQNRLQKLIEKvesaISSLLAQLPAVSDLASLLSa 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1422 -----DDLQRQKESAQQLVDNLKMELDKERKELAQVKSaigaqtklsddlecqkesvqqlVDNLKVELEKERKELAKVNS 1496
Cdd:pfam13166 319 feldvEDIESEAEVLNSQLDGLRRALEAKRKDPFKSIE----------------------LDSVDAKIESINDLVASINE 376
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442616328 1497 AFEAQTKLSDDLKLQKEDAQREV--FLVKErLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENR 1571
Cdd:pfam13166 377 LIAKHNEITDNFEEEKNKAKKKLrlHLVEE-FKSEIDEYKDKYAGLEKAINSLEKEIKNLEAEIKKLREEIKELEAQ 452
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
575-1528 |
1.95e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 47.09 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 575 DLELDNERLNDKCAELKSIIDRGDQHLADINLQLIEKEKQIKDVGAEIQE-------LRKRNINLENMLSQI-ADKEASA 646
Cdd:pfam01576 205 ELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEetaqknnALKKIRELEAQISELqEDLESER 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 647 ASHAQHLKQCGElLRAKYEVCRNEL---IAKNAAQDELvrmmmvpdgetLNGRVRQLIDLEMMHDEHNKMYAQmlkQLNE 723
Cdd:pfam01576 285 AARNKAEKQRRD-LGEELEALKTELedtLDTTAAQQEL-----------RSKREQEVTELKKALEEETRSHEA---QLQE 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 724 LSAKHDNMTHS---HLDFVKRTEIELEtKNAQIMAFDEHNNHFDrfltriftlLRSRNCPKSttmgsatnflESMHIEKR 800
Cdd:pfam01576 350 MRQKHTQALEElteQLEQAKRNKANLE-KAKQALESENAELQAE---------LRTLQQAKQ----------DSEHKRKK 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 801 feniemlIEGQLlsaDDLKRELDDLRSKNEELAKQningiikrnkfITSLEVNTEKVKQYITDLEEEAFKRKQKVVQLEN 880
Cdd:pfam01576 410 -------LEGQL---QELQARLSESERQRAELAEK-----------LSKLQSELESVSSLLNEAEGKNIKLSKDVSSLES 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 881 TLSKEQS-NAKEMAQRLDIAQQeIKDYHVEAirfiNTIRDRLQQDFNGV-NTPQQLGTCMTEFLKMYDQMevryEESSSL 958
Cdd:pfam01576 469 QLQDTQElLQEETRQKLNLSTR-LRQLEDER----NSLQEQLEEEEEAKrNVERQLSTLQAQLSDMKKKL----EEDAGT 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 959 VEKLTESQAKLEMQVAELQVELENKDTnqhsgalikqlndTIQNLEKVNAKLS---EDNTVSHTVHSKLNESLLKAQKEL 1035
Cdd:pfam01576 540 LEALEEGKKRLQRELEALTQQLEEKAA-------------AYDKLEKTKNRLQqelDDLLVDLDHQRQLVSNLEKKQKKF 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1036 DlrakiieNLEASERNLSMKLCELKDLKNK-----------LKSSDEKIAQIKETYEEQIKALQAKCDM------EAKKN 1098
Cdd:pfam01576 607 D-------QMLAEEKAISARYAEERDRAEAeareketralsLARALEEALEAKEELERTNKQLRAEMEDlvsskdDVGKN 679
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1099 EH-LERNQNQSLTQLKEdalencvlMSTKLEELQAKLQEgqqlVDSQKLELDMNRKELalvKSAYEAQTKLSDDL-QRQK 1176
Cdd:pfam01576 680 VHeLERSKRALEQQVEE--------MKTQLEELEDELQA----TEDAKLRLEVNMQAL---KAQFERDLQARDEQgEEKR 744
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1177 ESGQQLVDNLKVELEKERKELAhvnSAIGAQTKLSDDLEcQKESGQQLVDNLKVELEKERKELaqvksviEAQTKlsdDL 1256
Cdd:pfam01576 745 RQLVKQVRELEAELEDERKQRA---QAVAAKKKLELDLK-ELEAQIDAANKGREEAVKQLKKL-------QAQMK---DL 810
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1257 QREKESAQQLVDnlkvELDKERKELAQVNSAFEAQTklsddLQRQKESAQqlVDNLKVELDKERKELA-QVNSAFEAQTK 1335
Cdd:pfam01576 811 QRELEEARASRD----EILAQSKESEKKLKNLEAEL-----LQLQEDLAA--SERARRQAQQERDELAdEIASGASGKSA 879
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1336 LSDDLQREKESAQQlvdnLKVELDKErkelaqvksviEAQTKLSDDLQRQkesAQQLVDNLKVELDKERKELAKVksvie 1415
Cdd:pfam01576 880 LQDEKRRLEARIAQ----LEEELEEE-----------QSNTELLNDRLRK---STLQVEQLTTELAAERSTSQKS----- 936
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1416 aqtklsddlqrqkESAQQLVDNLKMELdkeRKELAQVKSAIGAQTKLS-DDLECQKESVQQlvdnlkvELEKERKELAKV 1494
Cdd:pfam01576 937 -------------ESARQQLERQNKEL---KAKLQEMEGTVKSKFKSSiAALEAKIAQLEE-------QLEQESRERQAA 993
|
970 980 990
....*....|....*....|....*....|....
gi 442616328 1495 NSAFEAQTKLSDDLKLQKEDAQREVFLVKERLVK 1528
Cdd:pfam01576 994 NKLVRRTEKKLKEVLLQVEDERRHADQYKDQAEK 1027
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
1033-1503 |
1.97e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 46.66 E-value: 1.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1033 KELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLERNQNQsltQL 1112
Cdd:pfam05557 51 QELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAEL---EL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1113 KEDALENCVLMStKLEELQAKLQEGQQLVDsqklELDMNRKELAlvksAYEAQTK-LSDDLQRQ-------KESGQQL-- 1182
Cdd:pfam05557 128 QSTNSELEELQE-RLDLLKAKASEAEQLRQ----NLEKQQSSLA----EAEQRIKeLEFEIQSQeqdseivKNSKSELar 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1183 VDNLKVELEKERKELAHVNSAIGAQTKLSDDLE------CQKESGQQLVDNLKVELEKERKELAQVKSVIEAQT---KLS 1253
Cdd:pfam05557 199 IPELEKELERLREHNKHLNENIENKLLLKEEVEdlkrklEREEKYREEAATLELEKEKLEQELQSWVKLAQDTGlnlRSP 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1254 DDLQREKESAQQ---------------------LVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNL 1312
Cdd:pfam05557 279 EDLSRRIEQLQQreivlkeenssltssarqlekARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGY 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1313 KVELDKERKELAQVNSafeaqtklSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQ------RQK 1386
Cdd:pfam05557 359 RAILESYDKELTMSNY--------SPQLLERIEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLErelqalRQQ 430
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1387 ES------AQQLVDNLKVELDK---ERKELAKVKSVIE---AQTKLSDDLQRQKESAQQLVDN--------LKMELDKER 1446
Cdd:pfam05557 431 ESladpsySKEEVDSLRRKLETlelERQRLREQKNELEmelERRCLQGDYDPKKTKVLHLSMNpaaeayqqRKNQLEKLQ 510
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442616328 1447 KELAQVKSAIGAQTKLSDDLECQKESVQQL----VDNLKVELEKERKELAKVNSAFEAQTK 1503
Cdd:pfam05557 511 AEIERLKRLLKKLEDDLEQVLRLPETTSTMnfkeVLDLRKELESAELKNQRLKEVFQAKIQ 571
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1126-1331 |
1.98e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.93 E-value: 1.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1126 KLEELQAKLQEGQQlvdsQKLELDMNRKELALVKSAYEAQTKLSDdLQRQKESGQQLVDNLKVELEKERKELAHVNSAIG 1205
Cdd:COG3206 190 ELEEAEAALEEFRQ----KNGLVDLSEEAKLLLQQLSELESQLAE-ARAELAEAEARLAALRAQLGSGPDALPELLQSPV 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1206 AQTKLSDDLECQkesgQQLVDNLKV------ELEKERKELAQVKSVIEAQT-KLSDDLQREKESAQQLVDNLKVELDKER 1278
Cdd:COG3206 265 IQQLRAQLAELE----AELAELSARytpnhpDVIALRAQIAALRAQLQQEAqRILASLEAELEALQAREASLQAQLAQLE 340
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 442616328 1279 KELAQVNsafEAQTKLSdDLQRQKESAQQLVDNLkveldKERKELAQVNSAFE 1331
Cdd:COG3206 341 ARLAELP---ELEAELR-RLEREVEVARELYESL-----LQRLEEARLAEALT 384
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
1346-1461 |
2.22e-04 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 45.87 E-value: 2.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1346 SAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKvksvieAQTKLSDDLQ 1425
Cdd:TIGR04320 244 FDKTPIPNPPNSLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQAALATAQKELAN------AQAQALQTAQ 317
|
90 100 110
....*....|....*....|....*....|....*.
gi 442616328 1426 RQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTK 1461
Cdd:TIGR04320 318 NNLATAQAALANAEARLAKAKEALANLNADLAKKQA 353
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1247-1491 |
2.76e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 46.43 E-value: 2.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1247 EAQTKLSDDLQR---EKESAQQLVDNLKVEL---DKERKELAQVNSAFE----AQTKLSDDLQRQKESAQQLVDNLKVEL 1316
Cdd:PLN02939 149 QARLQALEDLEKiltEKEALQGKINILEMRLsetDARIKLAAQEKIHVEileeQLEKLRNELLIRGATEGLCVHSLSKEL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1317 DKERKElaqvnsafeaQTKLSDDLQ--REKESAQQLVDNLKVELDKERKEL-AQVKSV----IEAQTKLSDDLQRQKESA 1389
Cdd:PLN02939 229 DVLKEE----------NMLLKDDIQflKAELIEVAETEERVFKLEKERSLLdASLRELeskfIVAQEDVSKLSPLQYDCW 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1390 QQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLV----DNLKMELDKERKELAQVKSAIGAQTKLSdD 1465
Cdd:PLN02939 299 WEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANvskfSSYKVELLQQKLKLLEERLQASDHEIHS-Y 377
|
250 260
....*....|....*....|....*..
gi 442616328 1466 LECQKESVQQLVDNL-KVELEKERKEL 1491
Cdd:PLN02939 378 IQLYQESIKEFQDTLsKLKEESKKRSL 404
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1508-1869 |
2.84e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 2.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1508 LKLQKEDAQREVFLVKERLVKekrefevklatLEDIIETLE--MRCTQMEEERATAYEQInklenrcqeKDNVKSSQLQV 1585
Cdd:TIGR02168 170 YKERRKETERKLERTRENLDR-----------LEDILNELErqLKSLERQAEKAERYKEL---------KAELRELELAL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1586 ETFKVEclhhQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDIPK-VVELQHRLEAETA 1664
Cdd:TIGR02168 230 LVLRLE----ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYaLANEISRLEQQKQ 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1665 EREEAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELIEFYRNRVEALERLLLASNQELEELN 1744
Cdd:TIGR02168 306 ILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1745 S--------IQSNQAEgVRDLGDTYSAAEGRQTESDQDKEryqklALDCKILQAKYRDAKDEIKRCEKKIKDQRLEMEGK 1816
Cdd:TIGR02168 386 SkvaqlelqIASLNNE-IERLEARLERLEDRRERLQQEIE-----ELLKKLEEAELKELQAELEELEEELEELQEELERL 459
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 442616328 1817 LEKMKNKMRSLytAEVTRMKEKQERDAAKSASELEALTAQNAKYEEHTRKLSN 1869
Cdd:TIGR02168 460 EEALEELREEL--EEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKA 510
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
315-1136 |
2.88e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 2.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 315 ESLIAEITDKLHDLRVENSELSEKLNL-AGKRLLEYTDRIRFLESRVDDLTRIvssrDVMISSLESDKQELDKCLKEARD 393
Cdd:TIGR02169 190 DLIIDEKRQQLERLRREREKAERYQALlKEKREYEGYELLKEKEALERQKEAI----ERQLASLEEELEKLTEEISELEK 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 394 DLHNRIEVLNAssdlldcslspnttpenlassvIDKQLREK-EHENAELKEKLLNLNnSQRELCQALSSFLQKHNIDHEf 472
Cdd:TIGR02169 266 RLEEIEQLLEE----------------------LNKKIKDLgEEEQLRVKEKIGELE-AEIASLERSIAEKERELEDAE- 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 473 pvewtsssllSTISAIESKFVNTLEKSTQMKKECDVQSVCVEKLLEKCKLLSvslgcqpKELDGFEATIPEAMESGFESS 552
Cdd:TIGR02169 322 ----------ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELK-------EELEDLRAELEEVDKEFAETR 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 553 REcetiLSCCHMKVVDIASKNNDLELDNERLNDKCAELksiidrgDQHLADINLQLIEKEKQIKDVGAEIQELRKRNINL 632
Cdd:TIGR02169 385 DE----LKDYREKLEKLKREINELKRELDRLQEELQRL-------SEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 633 ENMLSQIADKEASAASHAQHLKQCGELLRAKYEVCRNELIAKNAAQDEL---------VRMMMVPDGETLNGRVRQLIDL 703
Cdd:TIGR02169 454 EWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASeervrggraVEEVLKASIQGVHGTVAQLGSV 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 704 EmmhdehnKMYAQMLK-----QLNELSAKHDNMTHSHLDFVKRteieletKNAQIMAFDEHNNhfdrflTRIFTLLRSRN 778
Cdd:TIGR02169 534 G-------ERYATAIEvaagnRLNNVVVEDDAVAKEAIELLKR-------RKAGRATFLPLNK------MRDERRDLSIL 593
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 779 CPKStTMGSATNFLEsmhIEKRFENIEMLIEGQLLSADDL---KRELDDLRSKNEElakqniNGIIKRNKFITSLEVNTE 855
Cdd:TIGR02169 594 SEDG-VIGFAVDLVE---FDPKYEPAFKYVFGDTLVVEDIeaaRRLMGKYRMVTLE------GELFEKSGAMTGGSRAPR 663
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 856 KVKQYITDLEEEAFKRKQKVVQLENTLSKEQSNAKEMAQRLDIAQQEIKDyhveAIRFINTIRDRLQQDFNGVNTPQQLG 935
Cdd:TIGR02169 664 GGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSD----ASRKIGEIEKEIEQLEQEEEKLKERL 739
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 936 TCMTEFLKmydQMEVRYEESSSLVEKLTESQAKLEMQVAELQVELEN-KDTNQHSGalIKQLNDTIQNLEKVNAKLSEdn 1014
Cdd:TIGR02169 740 EELEEDLS---SLEQEIENVKSELKELEARIEELEEDLHKLEEALNDlEARLSHSR--IPEIQAELSKLEEEVSRIEA-- 812
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1015 tVSHTVHSKLNESLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIK---ETYEEQIKALQAKC 1091
Cdd:TIGR02169 813 -RLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEaalRDLESRLGDLKKER 891
|
810 820 830 840
....*....|....*....|....*....|....*....|....*
gi 442616328 1092 DMEAKKNEHLERNQNQSLTQLkEDALENCVLMSTKLEELQAKLQE 1136
Cdd:TIGR02169 892 DELEAQLRELERKIEELEAQI-EKKRKRLSELKAKLEALEEELSE 935
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1441-1887 |
3.00e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 3.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1441 ELDKERKEL--------AQVKSAIGAQTKLSDDLECQKESVQQLVDNLKvELEKERKELAKvnsafeAQTKLSDDL-KLQ 1511
Cdd:COG4717 50 RLEKEADELfkpqgrkpELNLKELKELEEELKEAEEKEEEYAELQEELE-ELEEELEELEA------ELEELREELeKLE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1512 KEDAQREVFLVKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKSSQLQVETFKVE 1591
Cdd:COG4717 123 KLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELE 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1592 clhhQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEiAEHNQVKDQLAQITDIPKVVELQHRLEAETAEREEAQN 1671
Cdd:COG4717 203 ----ELQQRLAELEEELEEAQEELEELEEELEQLENELEAA-ALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAG 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1672 KLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELIEFYRNRVEALERLLLASNQELEELNSIQSNQA 1751
Cdd:COG4717 278 VLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAE 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1752 EGVRDLgdtysaaegrqTESDQDKERYQKLAldckilQAKYRDAKDEIKRCEKKikDQRLEMEGKLEKMKNKMRSLYTAE 1831
Cdd:COG4717 358 ELEEEL-----------QLEELEQEIAALLA------EAGVEDEEELRAALEQA--EEYQELKEELEELEEQLEELLGEL 418
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 442616328 1832 VTRMKEKQERDAAKsasELEALTAQNAKYEEHTRKLSNQIVRLNEKILEQQKQHAI 1887
Cdd:COG4717 419 EELLEALDEEELEE---ELEELEEELEELEEELEELREELAELEAELEQLEEDGEL 471
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
1231-1510 |
3.13e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 45.29 E-value: 3.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1231 ELEKERKEL-AQVKSVIEAQTKLSDDLQREKESAQQLVDnLKVELDKERKELAQV-NSAFEAQTKLSDDLQRQKESAQQL 1308
Cdd:COG1340 26 ELKEKRDELnEELKELAEKRDELNAQVKELREEAQELRE-KRDELNEKVKELKEErDELNEKLNELREELDELRKELAEL 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1309 VDNlKVELDKERKELAQVNsaFEAQTKlSDDLQREKESAQQLvDNLKVELDKERKELAQVKSVIEAQTKLsDDLQRQKES 1388
Cdd:COG1340 105 NKA-GGSIDKLRKEIERLE--WRQQTE-VLSPEEEKELVEKI-KELEKELEKAKKALEKNEKLKELRAEL-KELRKEAEE 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1389 AQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLEC 1468
Cdd:COG1340 179 IHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEAQEKADELHEEIIELQKELRELRKELKKLRKKQRALKR 258
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 442616328 1469 QKEsvqqlvdnlKVELEKERKELAKvnsAFEAQTKLS-DDLKL 1510
Cdd:COG1340 259 EKE---------KEELEEKAEEIFE---KLKKGEKLTtEELKL 289
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1022-1265 |
4.47e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.21 E-value: 4.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1022 SKLNESLLKAQKELDlraKIIENLEASERnlsmklcELKDLKNKLKSSDEKIAQIketyEEQIKALQAKCD-MEAKKNEH 1100
Cdd:COG3883 26 SELQAELEAAQAELD---ALQAELEELNE-------EYNELQAELEALQAEIDKL----QAEIAEAEAEIEeRREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1101 LERNQNQSLTQLKEDALencvLMSTKLEELQAKLQEGQQLVDSQKleldmnrkelALVKSAYEAQTKLsDDLQRQKESGQ 1180
Cdd:COG3883 92 ARALYRSGGSVSYLDVL----LGSESFSDFLDRLSALSKIADADA----------DLLEELKADKAEL-EAKKAELEAKL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1181 QLVDNLKVELEKERKELahvNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREK 1260
Cdd:COG3883 157 AELEALKAELEAAKAEL---EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233
|
....*
gi 442616328 1261 ESAQQ 1265
Cdd:COG3883 234 AAAAA 238
|
|
| CCDC73 |
pfam15818 |
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ... |
1027-1436 |
4.78e-04 |
|
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.
Pssm-ID: 464893 [Multi-domain] Cd Length: 1048 Bit Score: 45.71 E-value: 4.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1027 SLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIA-QIKETYEEQIKALQAK-CDMEAKKNEHlern 1104
Cdd:pfam15818 8 SLLEALEELRMRREAETQYEEQIGKIIVETQELKWQKETLQNQKETLAkQHKEAMAVFKKQLQMKmCALEEEKGKY---- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1105 qnQSLTQLKEDALENCVLMSTKLE----ELQAKLQEGQQLVDSQKLELDMNRKELALVKSAY-----------EAQTKLS 1169
Cdd:pfam15818 84 --QLATEIKEKEIEGLKETLKALQvskySLQKKVSEMEQKLQLHLLAKEDHHKQLNEIEKYYatitgqfglvkENHGKLE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1170 DDLQRQKESGQQL----------VDNLKVELEKERKELahVNSAIGAQTKLSD---DLECQKESGQQLVDNLKVELEKER 1236
Cdd:pfam15818 162 QNVQEAIQLNKRLsalnkkqeseICSLKKELKKVTSDL--IKSKVTCQYKMGEeniNLTIKEQKFQELQERLNMELELNK 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1237 KELAQVKSVIEAQTKLSDDLQREKESAQQLVdNLKVELDKERKELAQVNSAFEAQTKLSDD-----------LQRQKESA 1305
Cdd:pfam15818 240 KINEEITHIQEEKQDIIISFQHMQQLLQQQT-QANTEMEAELKALKENNQTLERDNELQREkvkeneekflnLQNEHEKA 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1306 QQLVDNLKVELDKERKELA-QVNSAFEAQTKLsddlqreKESAQQLVDNLKVELDKERKELAQVKSV-IEAQTKLSDDLQ 1383
Cdd:pfam15818 319 LGTWKKHVEELNGEINEIKnELSSLKETHIKL-------QEHYNKLCNQKKFEEDKKFQNVPEVNNEnSEMSTEKSENLI 391
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 442616328 1384 RQKESAQQLVDNLKVE---LDKERKELAKVKSVIEAQTkLSDDLQRQKESAQQLVD 1436
Cdd:pfam15818 392 IQKYNSEQEIREENTKsfcSDTEYRETEKKKGPPVEEI-IIEDLQVLEKSFKNEID 446
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1038-1403 |
6.03e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.89 E-value: 6.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1038 RAKIIEN-LEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDmEAKKNEHLERNQNQSLTQLKEDA 1116
Cdd:pfam07888 28 RAELLQNrLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVA-ELKEELRQSREKHEELEEKYKEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1117 LENCVLMSTKLEELQAKLQEGQQLVdsQKLELDMNrkelALVKSAYEAQTKLSDDLQRQKESGQQLVD------NLKVEL 1190
Cdd:pfam07888 107 SASSEELSEEKDALLAQRAAHEARI--RELEEDIK----TLTQRVLERETELERMKERAKKAGAQRKEeeaerkQLQAKL 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1191 EKERKELAHVNSAIgaqTKLSDDLECQKESGQQLVDNL-------------KVELEKERKELAQVKSVIEAQTKLSDDLQ 1257
Cdd:pfam07888 181 QQTEEELRSLSKEF---QELRNSLAQRDTQVLQLQDTIttltqklttahrkEAENEALLEELRSLQERLNASERKVEGLG 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1258 REKESAQQLVDNLKVELDKERKELAQVNSAF-EAQTKLSDD---LQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQ 1333
Cdd:pfam07888 258 EELSSMAAQRDRTQAELHQARLQAAQLTLQLaDASLALREGrarWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEE 337
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 442616328 1334 T----KLSDDLQREKESAqqlvdnlKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKE 1403
Cdd:pfam07888 338 RmereKLEVELGREKDCN-------RVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQRLETV 404
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
1174-1560 |
6.50e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 44.95 E-value: 6.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1174 RQKESGQQLVDNLKVELEKERKELAHVNSAIGAQ----TKLSDDLECQKESGQQLVDNLKVELEKERKELAQV------- 1242
Cdd:COG5185 176 LKKLEIFGLTLGLLKGISELKKAEPSGTVNSIKEsetgNLGSESTLLEKAKEIINIEEALKGFQDPESELEDLaqtsdkl 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1243 KSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVElDKERKE 1322
Cdd:COG5185 256 EKLVEQNTDLRLEKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATESLEEQLAAAEAEQELE-ESKRET 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1323 LAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKER--KELAQVKSVIEAqTKLSDDLQRQ------KESAQQLVD 1394
Cdd:COG5185 335 ETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVELSKssEELDSFKDTIES-TKESLDEIPQnqrgyaQEILATLED 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1395 NLKvELDKERKEL------------AKVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKE-RKELAQVKSAIgaqTK 1461
Cdd:COG5185 414 TLK-AADRQIEELqrqieqatssneEVSKLLNELISELNKVMREADEESQSRLEEAYDEINRSvRSKKEDLNEEL---TQ 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1462 LSDDLECQKESVQQLVDNLKVELEKERKEL-AKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKERLVKEKReFEVKLATL 1540
Cdd:COG5185 490 IESRVSTLKATLEKLRAKLERQLEGVRSKLdQVAESLKDFMRARGYAHILALENLIPASELIQASNAKTDG-QAANLRTA 568
|
410 420
....*....|....*....|..
gi 442616328 1541 EDIIET--LEMRCTQMEEERAT 1560
Cdd:COG5185 569 VIDELTqyLSTIESQQAREDPI 590
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
960-1425 |
6.67e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 6.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 960 EKLTESQAKLEMQVAELQVELENKDTNQHSGALIKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLnESLLKAQKELDLRA 1039
Cdd:COG4717 91 AELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERL-EELRELEEELEELE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1040 KIIENLEASERNLSMKLC-----ELKDLKNKLKSSDEKIAQiketYEEQIKALQAKCDmeaKKNEHLERNQNQSLTQLKE 1114
Cdd:COG4717 170 AELAELQEELEELLEQLSlateeELQDLAEELEELQQRLAE----LEEELEEAQEELE---ELEEELEQLENELEAAALE 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1115 DALENCVLMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVelekER 1194
Cdd:COG4717 243 ERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEEL----EE 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1195 KELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELaqvksvieaqtklsdDLQREKESAQQLVDNLKVEL 1274
Cdd:COG4717 319 EELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL---------------QLEELEQEIAALLAEAGVED 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1275 DKERKELAQvnsafeaqtklsddLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAqtklsDDLQREKESAQQLVDNL 1354
Cdd:COG4717 384 EEELRAALE--------------QAEEYQELKEELEELEEQLEELLGELEELLEALDE-----EELEEELEELEEELEEL 444
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442616328 1355 KVELDKERKELAQVKSVIEaQTKLSDDLQRQKESAQQLVDNLKvELDKERKELAKVKSVIE-AQTKLSDDLQ 1425
Cdd:COG4717 445 EEELEELREELAELEAELE-QLEEDGELAELLQELEELKAELR-ELAEEWAALKLALELLEeAREEYREERL 514
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
1269-1415 |
6.96e-04 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 44.24 E-value: 6.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1269 NLKVELDKERKELAQVNSAFEAQTKLSDDLqrqKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQ 1348
Cdd:smart00787 116 DKQFQLVKTFARLEAKKMWYEWRMKLLEGL---KEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLK 192
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442616328 1349 QLVDNLKV----ELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIE 1415
Cdd:smart00787 193 QLEDELEDcdptELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1059-1548 |
7.39e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 7.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1059 LKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLERNQNQSLtqlkedalencvlmstKLEELQAKLQEgq 1138
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELE----------------ELEEELEELEA-- 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1139 qlvdsqkleldmNRKELALVKSAYEAQTKLSDDLQRQKESGQQLvDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQK 1218
Cdd:COG4717 110 ------------ELEELREELEKLEKLLQLLPLYQELEALEAEL-AELPERLEELEERLEELRELEEELEELEAELAELQ 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1219 ESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDD----LQREKESAQQLVDNLKVELDKERKE------------LA 1282
Cdd:COG4717 177 EELEELLEQLSLATEEELQDLAEELEELQQRLAELEEeleeAQEELEELEEELEQLENELEAAALEerlkearlllliAA 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1283 QVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKER 1362
Cdd:COG4717 257 ALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSP 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1363 KELAQVKSVIEAQTKLSDDLQRQKESAQQLvdnlkvELDKERKEL---AKVKSVIEAQTKLsdDLQRQKESAQQLVDNLK 1439
Cdd:COG4717 337 EELLELLDRIEELQELLREAEELEEELQLE------ELEQEIAALlaeAGVEDEEELRAAL--EQAEEYQELKEELEELE 408
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1440 MELDKERKELAQVKSAIGAqtklsDDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEA--QTKLSDDLKLQKEDAQR 1517
Cdd:COG4717 409 EQLEELLGELEELLEALDE-----EELEEELEELEEELEELEEELEELREELAELEAELEQleEDGELAELLQELEELKA 483
|
490 500 510
....*....|....*....|....*....|.
gi 442616328 1518 EVflvkERLVKEKREFEVKLATLEDIIETLE 1548
Cdd:COG4717 484 EL----RELAEEWAALKLALELLEEAREEYR 510
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
1248-1391 |
7.79e-04 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 44.98 E-value: 7.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1248 AQTKLSDDLQR--EKESAQQLVDNLKVELDKERKELAQvnsafEAQTKLSDDLQRQKESAQQLV-DNLKVELDkERKELA 1324
Cdd:pfam13779 494 AQERLSEALERgaSDEEIAKLMQELREALDDYMQALAE-----QAQQNPQDLQQPDDPNAQEMTqQDLQRMLD-RIEELA 567
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442616328 1325 QVNSAFEAQTKLSDdlqrekesAQQLVDNLKV------------ELDKERKELAQvksVIEAQTKLSDDLQRQKESAQQ 1391
Cdd:pfam13779 568 RSGRRAEAQQMLSQ--------LQQMLENLQAgqpqqqqqqgqsEMQQAMDELGD---LLREQQQLLDETFRQLQQQGG 635
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
224-467 |
8.49e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 8.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 224 ELLEQRTKELRGIRTQLEVVRYEKALLEEQQMEKDELIKVLNKEKMMAKMELEKLRnVKLTEEHHDNESHHIMPYEFEHM 303
Cdd:TIGR02168 253 EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILR-ERLANLERQLEELEAQLEELESK 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 304 KGCLLKEIGLKESLIAEITDKLHDLRVENSELSEKLNLAGKRLLEYTDRIRFLESRVDDLTRIVSSRDVMISSLESDKQE 383
Cdd:TIGR02168 332 LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 384 LDkclkEARDDLHNRIEVLNASSDLLDCSLSPNTTPEnlassvIDKQLREKEHENAELKEKLLNLNNSQRELCQALSSFL 463
Cdd:TIGR02168 412 LE----DRRERLQQEIEELLKKLEEAELKELQAELEE------LEEELEELQEELERLEEALEELREELEEAEQALDAAE 481
|
....
gi 442616328 464 QKHN 467
Cdd:TIGR02168 482 RELA 485
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
1275-1466 |
8.75e-04 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 44.41 E-value: 8.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1275 DKERKELAQVNSAfEAQTKLSDDLQRQKESAQQlvdnlKVELDKERKElaqvnsAFEAQTKLSDDLQREKESAQQLVDNL 1354
Cdd:PRK09510 78 EEQRKKKEQQQAE-ELQQKQAAEQERLKQLEKE-----RLAAQEQKKQ------AEEAAKQAALKQKQAEEAAAKAAAAA 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1355 KVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQ-----KE 1429
Cdd:PRK09510 146 KAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKaaaeaKA 225
|
170 180 190
....*....|....*....|....*....|....*..
gi 442616328 1430 SAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDL 1466
Cdd:PRK09510 226 AAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAAEVDDL 262
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1223-1400 |
9.37e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.37 E-value: 9.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1223 QLVDNLKVELEKERKEL-AQVKsvieaqtklsdDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQ 1301
Cdd:COG1579 13 QELDSELDRLEHRLKELpAELA-----------ELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1302 KESA--QQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQtkls 1379
Cdd:COG1579 82 LGNVrnNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAE---- 157
|
170 180
....*....|....*....|.
gi 442616328 1380 ddLQRQKESAQQLVDNLKVEL 1400
Cdd:COG1579 158 --LEELEAEREELAAKIPPEL 176
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1276-1875 |
1.16e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.57 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1276 KERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQlvdnlk 1355
Cdd:TIGR00618 163 KEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQ------ 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1356 veldKERKELAQVKsviEAQTKLSDDLQRQKEsAQQLVDNLKvELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQ--Q 1433
Cdd:TIGR00618 237 ----QTQQSHAYLT---QKREAQEEQLKKQQL-LKQLRARIE-ELRAQEAVLEETQERINRARKAAPLAAHIKAVTQieQ 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1434 LVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNlKVELEKERKELAKVNSAFEAQTKLSDDLKLQKE 1513
Cdd:TIGR00618 308 QAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQ-EIHIRDAHEVATSIREISCQQHTLTQHIHTLQQ 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1514 daQREVFLVKERLVKEKREfevKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKSSQLQVETFKVECL 1593
Cdd:TIGR00618 387 --QKTTLTQKLQSLCKELD---ILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHL 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1594 HH------QLKSEMATHNSLVEDLNRKLAEKVSKLDFVQS--RLMTEIAEHNQVKDQLAqitDIPKVveLQHRLEAETAE 1665
Cdd:TIGR00618 462 QEsaqslkEREQQLQTKEQIHLQETRKKAVVLARLLELQEepCPLCGSCIHPNPARQDI---DNPGP--LTRRMQRGEQT 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1666 REEAQNKLAVVTGRLDEITRELdnARLEHGAQILRMEETA--------REVGNKNAELCELIEFYRNRVEALERLLLASN 1737
Cdd:TIGR00618 537 YAQLETSEEDVYHQLTSERKQR--ASLKEQMQEIQQSFSIltqcdnrsKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQ 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1738 QELEELNSIQSNQAEgvrdlgdtySAAEGRQTESDQDKERYQKLALDCKILQAKYRDAKDEIKRCEKKIKDQRlemEGKL 1817
Cdd:TIGR00618 615 HALLRKLQPEQDLQD---------VRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASR---QLAL 682
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 442616328 1818 EKMKNKMRSLytaevTRMKEKQERDAAKSASELEALTAQNAKYEEHTRKLSNQIVRLN 1875
Cdd:TIGR00618 683 QKMQSEKEQL-----TYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLA 735
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1126-1282 |
1.27e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.99 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1126 KLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHVNSA-- 1203
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNke 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442616328 1204 IGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELA 1282
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELA 169
|
|
| CagA_N |
pfam18971 |
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial ... |
803-1132 |
1.35e-03 |
|
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial virulence determinant and critical for gastric carcinogenesis. X-ray crystallographic analysis of the N-terminal CagA fragment (residues 1-876) revealed that the region has a structure comprised of three discrete domains. Domain I constitutes a mobile CagA N terminus, while Domain II tethers CagA to the plasma membrane by interacting with membrane phosphatidylserine. Domain III interacts intramolecularly with the intrinsically disordered C-terminal region, and this interaction potentiates the pathogenic scaffold/hub function of CagA.
Pssm-ID: 408741 [Multi-domain] Cd Length: 876 Bit Score: 43.99 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 803 NIEMLIEGQLLSADDLKRELDDLRSKNEELAKQNINgiikRNKFITSLEV--NTEKVKQYITDLEEEAFKRKQKVVQLEN 880
Cdd:pfam18971 560 NLENKLTAKGLSLQEANKLIKDFLSSNKELAGKALN----FNKAVAEAKStgNYDEVKKAQKDLEKSLRKREHLEKEVEK 635
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 881 TLSKEQSNAKEMAQRLDIAQQeiKDyhvEAIRFINTIRDR------LQQDFNGV-----NTPQQLGTCMTEFLKMYDQME 949
Cdd:pfam18971 636 KLESKSGNKNKMEAKAQANSQ--KD---EIFALINKEANRdaraiaYTQNLKGIkrelsDKLEKISKDLKDFSKSFDEFK 710
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 950 VRYEESSSLVEkltESQAKLEMQVAELQVELEnkdtnqhsgalikqlndTIQNLEKVNAKLSEDNTVSHTVHSKLNES-- 1027
Cdd:pfam18971 711 NGKNKDFSKAE---ETLKALKGSVKDLGINPE-----------------WISKVENLNAALNEFKNGKNKDFSKVTQAks 770
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1028 -LLKAQKELDLRAKIIENLEaserNLSMKLCELKDLKNkLKSSDEKIAQIKETYEEQIKalqakcdMEAKKNEHLERNQN 1106
Cdd:pfam18971 771 dLENSVKDVIINQKVTDKVD----NLNQAVSVAKAMGD-FSRVEQVLADLKNFSKEQLA-------QQAQKNEDFNTGKN 838
|
330 340
....*....|....*....|....*.
gi 442616328 1107 QSLTQLKEDALeNCVLMSTKLEELQA 1132
Cdd:pfam18971 839 SELYQSVKNSV-NKTLVGNGLSGIEA 863
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
952-1099 |
1.39e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 44.15 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 952 YEESSSLVEKLTESQAK---LEMQVAELQ------VELENKDTNQHSGAL-----IKQLNDTIQNLEKVNAKLSED---- 1013
Cdd:PRK05771 99 EKEIKELEEEISELENEikeLEQEIERLEpwgnfdLDLSLLLGFKYVSVFvgtvpEDKLEELKLESDVENVEYISTdkgy 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1014 NTVSHTVHSKLNESLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDM 1093
Cdd:PRK05771 179 VYVVVVVLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEI 258
|
....*.
gi 442616328 1094 EAKKNE 1099
Cdd:PRK05771 259 ELERAE 264
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1289-1904 |
1.51e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.94 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1289 EAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKEsaqqlvdNLKVELDKERKELAQV 1368
Cdd:pfam05483 74 EGLSRLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENE-------KVSLKLEEEIQENKDL 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1369 KSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQ-QLVDNLKMELDKERK 1447
Cdd:pfam05483 147 IKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARlEMHFKLKEDHEKIQH 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1448 ELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKelaKVNsafeaqtKLSDDLKLQKEDAqREVFLVKERLV 1527
Cdd:pfam05483 227 LEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRD---KAN-------QLEEKTKLQDENL-KELIEKKDHLT 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1528 KEKREFEVKL-------ATLEDIIETLEMRCTQMEEERATAYEQINKlenrCQEKDNVKSSQLQVETFKVECLHHQLKSE 1600
Cdd:pfam05483 296 KELEDIKMSLqrsmstqKALEEDLQIATKTICQLTEEKEAQMEELNK----AKAAHSFVVTEFEATTCSLEELLRTEQQR 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1601 MATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITdipkvvELQHRLEAETAEREEAQNKLAVVTGRL 1680
Cdd:pfam05483 372 LEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDE------KLLDEKKQFEKIAEELKGKEQELIFLL 445
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1681 DEITRELDNARLEHGAQILRMEETAREVGNKNAELceliefyrnRVEALERLLLASNQELEELNSiqsnqAEGVRDLGDT 1760
Cdd:pfam05483 446 QAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTEL---------EKEKLKNIELTAHCDKLLLEN-----KELTQEASDM 511
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1761 YSAAEGRQTESDQDKERYQKLALDCKILQAKYRDAKDEIKRCEKKIKDQRLEMEGKLEKMKNKMRSLYTAEVTRMKE--- 1837
Cdd:pfam05483 512 TLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQmki 591
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1838 ---------KQERDAAKSASELEALT-AQNAKYEEHTRKLSNQIVRLNEKILE----QQKQHAIISTNLRHLQMQPISET 1903
Cdd:pfam05483 592 lenkcnnlkKQIENKNKNIEELHQENkALKKKGSAENKQLNAYEIKVNKLELElasaKQKFEEIIDNYQKEIEDKKISEE 671
|
.
gi 442616328 1904 K 1904
Cdd:pfam05483 672 K 672
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
810-1047 |
1.57e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 810 GQLLSADDLKRELDDLRSKNEELAKQningiikrnkfITSLEVNTEKVKQYITDLEEEAFKRKQKVVQLENTLSKEQSNA 889
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKE-----------LAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 890 KEMAQRLDIAQQEIKDYHVEAIRFINTIRDRLQQDFNGVNTPQQLgtcMTEFLKMYDQMEVRYEESSSLVEKLTESQAKL 969
Cdd:COG4942 86 AELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPED---FLDAVRRLQYLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442616328 970 EMQVAELQVELenkdtnqhsgaliKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNESLLKAQKELDLRAKIIENLEA 1047
Cdd:COG4942 163 AALRAELEAER-------------AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1272-1533 |
1.77e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.76 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1272 VELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQqlvdnlKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLV 1351
Cdd:PRK05771 33 IEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLP------KLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELE 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1352 DNLKvELDKERKELAQVKSVIEAQTKLSDDLQRQKESAqqLVDNLKVELDKERKELAKVKSVIEAQTKLSDDlqrqKESA 1431
Cdd:PRK05771 107 EEIS-ELENEIKELEQEIERLEPWGNFDLDLSLLLGFK--YVSVFVGTVPEDKLEELKLESDVENVEYISTD----KGYV 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1432 QQLVDNLKMELDKERKELAQvksaIGAQ-TKLSDdlecqKESVQQLVDNLKVELEKERKELAKVNSAFEA-QTKLSDDLK 1509
Cdd:PRK05771 180 YVVVVVLKELSDEVEEELKK----LGFErLELEE-----EGTPSELIREIKEELEEIEKERESLLEELKElAKKYLEELL 250
|
250 260
....*....|....*....|....*.
gi 442616328 1510 LQKE--DAQREVFLVKERLVKEKREF 1533
Cdd:PRK05771 251 ALYEylEIELERAEALSKFLKTDKTF 276
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
1253-1367 |
1.81e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 43.11 E-value: 1.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1253 SDDLQREKESAQQLVDNLKVELDKERKEL----------AQVNSAFEAQTKLSDDLQRQKE-------SAQQLvDNLKVE 1315
Cdd:COG1566 78 PTDLQAALAQAEAQLAAAEAQLARLEAELgaeaeiaaaeAQLAAAQAQLDLAQRELERYQAlykkgavSQQEL-DEARAA 156
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 442616328 1316 LDKERKELAQVNSAFeAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQ 1367
Cdd:COG1566 157 LDAAQAQLEAAQAQL-AQAQAGLREEEELAAAQAQVAQAEAALAQAELNLAR 207
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
1262-1377 |
1.90e-03 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 43.18 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1262 SAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQvnsafeAQTKLSDDLQ 1341
Cdd:TIGR04320 244 FDKTPIPNPPNSLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQAALATAQKELAN------AQAQALQTAQ 317
|
90 100 110
....*....|....*....|....*....|....*.
gi 442616328 1342 REKESAQQLVDNLKVELDKERKELAQVKSVIEAQTK 1377
Cdd:TIGR04320 318 NNLATAQAALANAEARLAKAKEALANLNADLAKKQA 353
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
1127-1705 |
1.95e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 43.66 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1127 LEELQAKLQEGQQLVDSQKLELDMN----RKELALVKSAYEAQTKLSDDLQRQKESG--QQLVDNLKVELEKERKELAHV 1200
Cdd:pfam10174 132 LFLLRKTLEEMELRIETQKQTLGARdesiKKLLEMLQSKGLPKKSGEEDWERTRRIAeaEMQLGHLEVLLDQKEKENIHL 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1201 NSAIGAQTKLSDDLEcqKESGQQLVDNLK----VELEKERKELAQVKSVIEAQTKLSDDlQREKESAQQLV--------- 1267
Cdd:pfam10174 212 REELHRRNQLQPDPA--KTKALQTVIEMKdtkiSSLERNIRDLEDEVQMLKTNGLLHTE-DREEEIKQMEVykshskfmk 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1268 ---DNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQ----KES---AQQLVDNLKVELDKERKELAQVNSAFEAQTKLS 1337
Cdd:pfam10174 289 nkiDQLKQELSKKESELLALQTKLETLTNQNSDCKQHievlKESltaKEQRAAILQTEVDALRLRLEEKESFLNKKTKQL 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1338 DDLQREKESAQQLVDNLKVELD-KERKELAQVKSVIEAQTKLSD------DLQRQKESAQQLVDNLKVELDKERKELAKV 1410
Cdd:pfam10174 369 QDLTEEKSTLAGEIRDLKDMLDvKERKINVLQKKIENLQEQLRDkdkqlaGLKERVKSLQTDSSNTDTALTTLEEALSEK 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1411 KSVIEA--QTKLSDDLQRQKESAQ--QLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEK 1486
Cdd:pfam10174 449 ERIIERlkEQREREDRERLEELESlkKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQ 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1487 ERKELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKErlVKEKREFEVKL-ATLEDIIETLEmrctQMEEERATAYEQI 1565
Cdd:pfam10174 529 KKEECSKLENQLKKAHNAEEAVRTNPEINDRIRLLEQE--VARYKEESGKAqAEVERLLGILR----EVENEKNDKDKKI 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1566 NKLENRCQEKdnvkssqlqvetfkveclhhqlksemathnslVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQ 1645
Cdd:pfam10174 603 AELESLTLRQ--------------------------------MKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLAD 650
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442616328 1646 ITDIPKVVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQ---ILRMEETA 1705
Cdd:pfam10174 651 NSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQleeILEMKQEA 713
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
1304-1419 |
2.10e-03 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 42.79 E-value: 2.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1304 SAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVksvieaQTKLSDDLQ 1383
Cdd:TIGR04320 244 FDKTPIPNPPNSLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQAALATAQKELANA------QAQALQTAQ 317
|
90 100 110
....*....|....*....|....*....|....*.
gi 442616328 1384 RQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTK 1419
Cdd:TIGR04320 318 NNLATAQAALANAEARLAKAKEALANLNADLAKKQA 353
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
1311-1454 |
2.38e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 42.70 E-value: 2.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1311 NLKVELDKERKELAQVNSAFEAQTKLSDDLqreKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQ 1390
Cdd:smart00787 116 DKQFQLVKTFARLEAKKMWYEWRMKLLEGL---KEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLK 192
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442616328 1391 QLVDNLKV----ELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKS 1454
Cdd:smart00787 193 QLEDELEDcdptELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1423-1574 |
2.67e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1423 DLQR---QKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAKVNSA-- 1497
Cdd:COG1579 11 DLQEldsELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNke 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442616328 1498 FEAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQE 1574
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREE 167
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
1290-1495 |
3.17e-03 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 43.05 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1290 AQTKLSDDLQRQ--KESAQQLVDNLKVELDKERKELAQvnsafEAQTKLSDDLQREKESAQQLV-DNLKVELDkERKELA 1366
Cdd:pfam13779 494 AQERLSEALERGasDEEIAKLMQELREALDDYMQALAE-----QAQQNPQDLQQPDDPNAQEMTqQDLQRMLD-RIEELA 567
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1367 QVKSVIEAQTKLSDdlqrqkesAQQLVDNLKV------------ELDKERKELAKVksvIEAQTKLSDDLQRQKESAQQl 1434
Cdd:pfam13779 568 RSGRRAEAQQMLSQ--------LQQMLENLQAgqpqqqqqqgqsEMQQAMDELGDL---LREQQQLLDETFRQLQQQGG- 635
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 442616328 1435 vDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDN---LKVELEKERKELAKVN 1495
Cdd:pfam13779 636 -QQQGQPGQQGQQGQGQQPGQGGQQPGAQMPPQGGAEALGDLAERqqaLRRRLEELQDELKELG 698
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1469-1623 |
3.44e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 3.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1469 QKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKERLVK-EKREFEVK----LATLEDI 1543
Cdd:COG1579 18 ELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKyEEQLGNVRnnkeYEALQKE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1544 IETLEMRCTQMEEERATAYEQINKLENRCQE-KDNVKSSQLQVETFKVEclhhqLKSEMATHNSLVEDLNRKLAEKVSKL 1622
Cdd:COG1579 98 IESLKRRISDLEDEILELMERIEELEEELAElEAELAELEAELEEKKAE-----LDEELAELEAELEELEAEREELAAKI 172
|
.
gi 442616328 1623 D 1623
Cdd:COG1579 173 P 173
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
1189-1449 |
3.59e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 41.82 E-value: 3.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1189 ELEKERKEL-AHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLV 1267
Cdd:COG1340 12 ELEEKIEELrEEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEERDELNEKLNELR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1268 DNLKvELDKERKELAQVNSAFEAQTKLSDDLQRQKESA-------QQLVDNLKV--ELDKERKELAQVNSAFEAQTKLSD 1338
Cdd:COG1340 92 EELD-ELRKELAELNKAGGSIDKLRKEIERLEWRQQTEvlspeeeKELVEKIKEleKELEKAKKALEKNEKLKELRAELK 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1339 DLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQT 1418
Cdd:COG1340 171 ELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEAQEKADELHEEIIELQKELRELRKELKKLR 250
|
250 260 270
....*....|....*....|....*....|.
gi 442616328 1419 KLSDDLQRQKEsaqqlvdnlKMELDKERKEL 1449
Cdd:COG1340 251 KKQRALKREKE---------KEELEEKAEEI 272
|
|
| KpsE |
COG3524 |
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis]; |
1293-1434 |
3.65e-03 |
|
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442746 [Multi-domain] Cd Length: 370 Bit Score: 42.14 E-value: 3.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1293 KLSDDLQR-QKESAQQLVDNLKVELDKERKELAqvnsAFEAQTKLSDdLQREKESAQQLVDNLKVELDKERKELAQVKSV 1371
Cdd:COG3524 169 QLSERAREdAVRFAEEEVERAEERLRDAREALL----AFRNRNGILD-PEATAEALLQLIATLEGQLAELEAELAALRSY 243
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442616328 1372 ieaqtkLSDDlQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLS--DDLQRQKESAQQL 1434
Cdd:COG3524 244 ------LSPN-SPQVRQLRRRIAALEKQIAAERARLTGASGGDSLASLLAeyERLELEREFAEKA 301
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1596-1810 |
3.71e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 3.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1596 QLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDipKVVELQHRLEAETAEREEAQNKLAV 1675
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEA--ELAELEKEIAELRAELEAQKEELAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1676 VTGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELIEFYRNRVEALERLLLASNQELEELNSIQSNQAEGVR 1755
Cdd:COG4942 109 LLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERA 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 442616328 1756 DLGDTYSAAEGRQTESDQDKERYQKLAldcKILQAKYRDAKDEIKRCEKKIKDQR 1810
Cdd:COG4942 189 ALEALKAERQKLLARLEKELAELAAEL---AELQQEAEELEALIARLEAEAAAAA 240
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1052-1574 |
4.17e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.58 E-value: 4.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1052 LSMKLCELKDLKNKLKSSDEKIAQIKETYEE----------QIKALQAKCDMEAKKNEHLERNQNQSLTQLKedalencv 1121
Cdd:PRK01156 178 LRAEISNIDYLEEKLKSSNLELENIKKQIADdekshsitlkEIERLSIEYNNAMDDYNNLKSALNELSSLED-------- 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1122 lMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKS--AYEAQTKLSD--DLQRQKESGQQLVDNLKVE-------- 1189
Cdd:PRK01156 250 -MKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINdpVYKNRNYINDyfKYKNDIENKKQILSNIDAEinkyhaii 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1190 -----LEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLV---DNLKVELEKERKElaqvksvieaQTKLSDDLQREKE 1261
Cdd:PRK01156 329 kklsvLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLksiESLKKKIEEYSKN----------IERMSAFISEILK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1262 SAQQLVDNLKVELDKERKELAQVNSAFeAQTKLSDDLQRQKEsaQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQ 1341
Cdd:PRK01156 399 IQEIDPDAIKKELNEINVKLQDISSKV-SSLNQRIRALRENL--DELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYN 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1342 REKESAQQLVDNLKVE---LDKERKELAQVKSVIEA-QTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQ 1417
Cdd:PRK01156 476 EKKSRLEEKIREIEIEvkdIDEKIVDLKKRKEYLESeEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRY 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1418 TKLS-DDLQRQKES---AQQLVDNLKMELDKERKElaQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAK 1493
Cdd:PRK01156 556 KSLKlEDLDSKRTSwlnALAVISLIDIETNRSRSN--EIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNN 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1494 VNSAFEAQTKLSDDLKLQKEDAQREVFLVKERlVKEKREFEVKLATLEDIIETLEMRCTQMEEERA-------TAYEQIN 1566
Cdd:PRK01156 634 KYNEIQENKILIEKLRGKIDNYKKQIAEIDSI-IPDLKEITSRINDIEDNLKKSRKALDDAKANRArlestieILRTRIN 712
|
....*...
gi 442616328 1567 KLENRCQE 1574
Cdd:PRK01156 713 ELSDRIND 720
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1673-1884 |
4.33e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 4.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1673 LAVVTGRLDEITRELDNARLehgaqilRMEETAREvgNKNAELCELIEFYRNRVEALERLLLASNQELEELNSiQSNQAE 1752
Cdd:COG3206 177 LEFLEEQLPELRKELEEAEA-------ALEEFRQK--NGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEA-RLAALR 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1753 GVRDLGDTYSAAEGRQTESDQDKERYQKLALDCKILQAKYRDAKDEIKRCEKKIKDqrlemegklekmknkMRSLYTAEV 1832
Cdd:COG3206 247 AQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAA---------------LRAQLQQEA 311
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 442616328 1833 TRMKEKQERDAAKSASELEALTAQNAKYEEHTRKLSNQIVRLNEkiLEQQKQ 1884
Cdd:COG3206 312 QRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRR--LEREVE 361
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
951-1333 |
4.63e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.63 E-value: 4.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 951 RYEESsslVEKLTESQAKLEMQVAELQVEL-ENKDTNQHSGALIK----QLNDTIQNLEkvnaklsEDNTVSHTVHSKLN 1025
Cdd:COG3096 351 RYQED---LEELTERLEEQEEVVEEAAEQLaEAEARLEAAEEEVDslksQLADYQQALD-------VQQTRAIQYQQAVQ 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1026 eSLLKAQKELDLRAKIIENLEASERNLSMKLCE----LKDLKNKLKSSDEKIAQiketYEeqiKALQAKCDMEAkkneHL 1101
Cdd:COG3096 421 -ALEKARALCGLPDLTPENAEDYLAAFRAKEQQateeVLELEQKLSVADAARRQ----FE---KAYELVCKIAG----EV 488
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1102 ERNQ-NQSLTQLKEDALENCVLmSTKLEELQAKLQEGQQLVDSQkleldmnrkelalvKSAYEAQTKLSDDLQRQKESGQ 1180
Cdd:COG3096 489 ERSQaWQTARELLRRYRSQQAL-AQRLQQLRAQLAELEQRLRQQ--------------QNAERLLEEFCQRIGQQLDAAE 553
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1181 QLvDNLKVELEKERKELahvnsaigaQTKLSDDLECQKESGQQLvdnlkVELEKERKELAQVKSV-IEAQ---TKLSDDL 1256
Cdd:COG3096 554 EL-EELLAELEAQLEEL---------EEQAAEAVEQRSELRQQL-----EQLRARIKELAARAPAwLAAQdalERLREQS 618
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442616328 1257 QREKESAQQLVDNLKVELDKERkelaqvnsafeAQTKLSDDLQRQKEsaqqlvdnlkvELDKERKELAQVNSAFEAQ 1333
Cdd:COG3096 619 GEALADSQEVTAAMQQLLERER-----------EATVERDELAARKQ-----------ALESQIERLSQPGGAEDPR 673
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1314-1571 |
4.77e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.22 E-value: 4.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1314 VELDKERKELAQVNSAFEAQTKLSDDLQREKESAQqlvdnlKVELDKERKELAQVKSVIEAqtklsddLQRQKESAQQLV 1393
Cdd:PRK05771 33 IEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLP------KLNPLREEKKKVSVKSLEEL-------IKDVEEELEKIE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1394 DNLKvELDKERKELakvksvieaQTKLSDdLQRQKESAQQLVdNLKMELDKERkELAQVKSAIGaqtKLSDDlecQKESV 1473
Cdd:PRK05771 100 KEIK-ELEEEISEL---------ENEIKE-LEQEIERLEPWG-NFDLDLSLLL-GFKYVSVFVG---TVPED---KLEEL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1474 QQLVDNLKVELEKERKElaKVNSAFEAQTKLSDDL--KLQKEDAQR----EVFLVKERLVKEKREFEVKLATLEDIIETL 1547
Cdd:PRK05771 161 KLESDVENVEYISTDKG--YVYVVVVVLKELSDEVeeELKKLGFERleleEEGTPSELIREIKEELEEIEKERESLLEEL 238
|
250 260
....*....|....*....|....
gi 442616328 1548 EMRCTQMEEERATAYEQINKLENR 1571
Cdd:PRK05771 239 KELAKKYLEELLALYEYLEIELER 262
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
1341-1518 |
4.79e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 41.72 E-value: 4.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1341 QREKESAQQlVDNLKVELDKERKELAQvksvIEAQTKLSDDLQRQKESAQQlvdnlKVELDKERKELAKVKSVIEAQTKL 1420
Cdd:PRK09510 80 QRKKKEQQQ-AEELQQKQAAEQERLKQ----LEKERLAAQEQKKQAEEAAK-----QAALKQKQAEEAAAKAAAAAKAKA 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1421 SDDLQRQKESAQQlvdnlkMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEA 1500
Cdd:PRK09510 150 EAEAKRAAAAAKK------AAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEA 223
|
170
....*....|....*...
gi 442616328 1501 QTKLSDDLKLQKEDAQRE 1518
Cdd:PRK09510 224 KAAAAKAAAEAKAAAEKA 241
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1433-1704 |
5.33e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.80 E-value: 5.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1433 QLVDNLKMELDKERKELAQVKSAIGAQT-KLSDDLECQKESVQQLVDNLKVELEKERKELAkvnSAFEAQTKLSDDLKlQ 1511
Cdd:pfam07888 30 ELLQNRLEECLQERAELLQAQEAANRQReKEKERYKRDREQWERQRRELESRVAELKEELR---QSREKHEELEEKYK-E 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1512 KEDAQREVFLVKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLEN-RCQEKDNVKSSQLQVETFKV 1590
Cdd:pfam07888 106 LSASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAqRKEEEAERKQLQAKLQQTEE 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1591 ECLH-----HQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRlmteIAEHNQVKDQLAQitdipkvveLQHRLEAETAE 1665
Cdd:pfam07888 186 ELRSlskefQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRK----EAENEALLEELRS---------LQERLNASERK 252
|
250 260 270
....*....|....*....|....*....|....*....
gi 442616328 1666 REEAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEET 1704
Cdd:pfam07888 253 VEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADA 291
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1371-1503 |
5.60e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.12 E-value: 5.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1371 VIEAQTKLSDDlqrqKESAQQLVDNL---KVELDKERKELAKVKsviEAQTKLSDDLQRQKESAQQLVDNLKMELDKE-R 1446
Cdd:PRK00409 504 IEEAKKLIGED----KEKLNELIASLeelERELEQKAEEAEALL---KEAEKLKEELEEKKEKLQEEEDKLLEEAEKEaQ 576
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 442616328 1447 KELAQVKSAIGAQTKLSDDLECQKESVQQLvdnlkVELEKERKELAKVNSAFEAQTK 1503
Cdd:PRK00409 577 QAIKEAKKEADEIIKELRQLQKGGYASVKA-----HELIEARKRLNKANEKKEKKKK 628
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1299-1645 |
5.61e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.25 E-value: 5.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1299 QRQKESAQQLVDNLKVELDkerkELAQVNSAFEAQTKLSDD---LQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQ 1375
Cdd:PRK04863 299 RRQLAAEQYRLVEMARELA----ELNEAESDLEQDYQAASDhlnLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEA 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1376 TKLSDDLQRQKESAQQLVDNLKveldkerKELAKVKSVIEAQTKLSddLQRQK-----ESAQQLVDNLKMELDK------ 1444
Cdd:PRK04863 375 DEQQEENEARAEAAEEEVDELK-------SQLADYQQALDVQQTRA--IQYQQavqalERAKQLCGLPDLTADNaedwle 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1445 --ERKELAQVKSAIGAQTKLS--DDLECQKESVQQLVDNLKVELEKER-----KELAKVNSAFEAQTKLSDDLKLQKEDA 1515
Cdd:PRK04863 446 efQAKEQEATEELLSLEQKLSvaQAAHSQFEQAYQLVRKIAGEVSRSEawdvaRELLRRLREQRHLAEQLQQLRMRLSEL 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1516 QREVFLvKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKL-ENRCQEKDNVKSSQLQVETFK----- 1589
Cdd:PRK04863 526 EQRLRQ-QQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEArERRMALRQQLEQLQARIQRLAarapa 604
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442616328 1590 -------VECLHHQLKSEMATHNSlVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQ 1645
Cdd:PRK04863 605 wlaaqdaLARLREQSGEEFEDSQD-VTEYMQQLLERERELTVERDELAARKQALDEEIERLSQ 666
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
615-1089 |
5.75e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.20 E-value: 5.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 615 IKDVGAEI-------QELRKRNINLENMLSQIADKEasaASHAQHLKQCgELLRAKYEVCRNELIAKNAAQDEL------ 681
Cdd:PRK01156 175 IDMLRAEIsnidyleEKLKSSNLELENIKKQIADDE---KSHSITLKEI-ERLSIEYNNAMDDYNNLKSALNELssledm 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 682 ---VRMMMVPDGETLNGRVRQLIDLEMMHDEHNKM------------------------YAQMLKQLN-ELSAKHDNMTH 733
Cdd:PRK01156 251 knrYESEIKTAESDLSMELEKNNYYKELEERHMKIindpvyknrnyindyfkykndienKKQILSNIDaEINKYHAIIKK 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 734 S------HLDFVKRTEiELETKNAQIMAFDEHNNHFDRFLTRIFTLLR-----SRNCPKSTTMGSAT---NFLESMHIEK 799
Cdd:PRK01156 331 LsvlqkdYNDYIKKKS-RYDDLNNQILELEGYEMDYNSYLKSIESLKKkieeySKNIERMSAFISEIlkiQEIDPDAIKK 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 800 RFENIE---MLIEGQLLSaddLKRELDDLRSKNEELaKQNINGIIKRNKF-ITSLEVNTEKVKQYITDLEEEAFKRKQKV 875
Cdd:PRK01156 410 ELNEINvklQDISSKVSS---LNQRIRALRENLDEL-SRNMEMLNGQSVCpVCGTTLGEEKSNHIINHYNEKKSRLEEKI 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 876 VQLENTLSKEQSNAKEMAQRLD-IAQQEIKDYHVEAiRFINTIRDRLQQDFNGVNTPQQLGTCMTEFLKMYDQMEVryee 954
Cdd:PRK01156 486 REIEIEVKDIDEKIVDLKKRKEyLESEEINKSINEY-NKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKL---- 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 955 ssSLVEKLTESQAKLEMQVAELQVELENKDTNQHSgaliKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNE---SLLKA 1031
Cdd:PRK01156 561 --EDLDSKRTSWLNALAVISLIDIETNRSRSNEIK----KQLNDLESRLQEIEIGFPDDKSYIDKSIREIENeanNLNNK 634
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 442616328 1032 QKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQA 1089
Cdd:PRK01156 635 YNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDD 692
|
|
| ClyA_Cry6Aa-like |
cd22656 |
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ... |
1337-1480 |
6.46e-03 |
|
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.
Pssm-ID: 439154 [Multi-domain] Cd Length: 309 Bit Score: 41.20 E-value: 6.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1337 SDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIeaqTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSviea 1416
Cdd:cd22656 109 DEELEEAKKTIKALLDDLLKEAKKYQDKAAKVVDKL---TDFENQTEKDQTALETLEKALKDLLTDEGGAIARKEI---- 181
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442616328 1417 qtklsDDLQRQKESAQQ-LVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNL 1480
Cdd:cd22656 182 -----KDLQKELEKLNEeYAAKLKAKIDELKALIADDEAKLAAALRLIADLTAADTDLDNLLALI 241
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
589-1656 |
6.47e-03 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 42.13 E-value: 6.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 589 ELKSIIDRGDQHLADINlQLIEKEKQIKDVGAEIQ----ELRKRNINLENMLSQIADKEASAASHAQHLKQCGELLRAKY 664
Cdd:PTZ00440 303 EIGDIIKRYNFHLKKIE-KGKEYIKRIQNNNIPPQvkkdELKKKYFESAKHYASFKFSLEMLSMLDSLLIKKEKILNNLF 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 665 EVCRNELIAK-------NAAQDELVRMMMVPDG------ETLNGRVRQLIDLEM-MHDEHNKMYAQMLKQLNELSaKHDN 730
Cdd:PTZ00440 382 NKLFGDLKEKietlldsEYFISKYTNIISLSEHtlkaaeDVLKENSQKIADYALySNLEIIEIKKKYDEKINELK-KSIN 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 731 MTHSHLDFVKRTEIELETKNAQIMAFDEHNNHFDRFLTRIFTLLRSRNCPKSTTMGSATNFLESMHIEKRFENIEMLIEG 810
Cdd:PTZ00440 461 QLKTLISIMKSFYDLIISEKDSMDSKEKKESSDSNYQEKVDELLQIINSIKEKNNIVNNNFKNIEDYYITIEGLKNEIEG 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 811 QLLSADDLKRELDDLRsKNEELAKQNINGIIKRNKFITSlevNTEKVKQYITDLEEeafkRKQKVVQLENTLSKEQSNAK 890
Cdd:PTZ00440 541 LIELIKYYLQSIETLI-KDEKLKRSMKNDIKNKIKYIEE---NVDHIKDIISLNDE----IDNIIQQIEELINEALFNKE 612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 891 EMAQRLDIAQQEIKDyhveairFINTIRDRLQQDFngvntpqqlgtcMTEFLKMYDQMEVRYEESSSlVEKLTESQAKLE 970
Cdd:PTZ00440 613 KFINEKNDLQEKVKY-------ILNKFYKGDLQEL------------LDELSHFLDDHKYLYHEAKS-KEDLQTLLNTSK 672
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 971 MQVAELqvELENKDTNqhsgalikqlNDTIQNLEKVNAKLSEdntvshtvhskLNESLLKAQKElDLRAKIIENLE---A 1047
Cdd:PTZ00440 673 NEYEKL--EFMKSDNI----------DNIIKNLKKELQNLLS-----------LKENIIKKQLN-NIEQDISNSLNqytI 728
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1048 SERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKalQAKCDMEAKKNEHLERNQNQSLTQLKEDALEN-CVLMSTK 1126
Cdd:PTZ00440 729 KYNDLKSSIEEYKEEEEKLEVYKHQIINRKNEFILHLY--ENDKDLPDGKNTYEEFLQYKDTILNKENKISNdINILKEN 806
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1127 LEELQAKLQEGQQLVdsQKLELDMNRKELALVKS----AYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKE---LAH 1199
Cdd:PTZ00440 807 KKNNQDLLNSYNILI--QKLEAHTEKNDEELKQLlqkfPTEDENLNLKELEKEFNENNQIVDNIIKDIENMNKNiniIKT 884
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1200 VNSAIGAQTKLSDDLECQKESGQqlvdNLKVELEKERKELaQVKSVIEAQTK--LSDDLQREKESAQQLVDNLKVELDKe 1277
Cdd:PTZ00440 885 LNIAINRSNSNKQLVEHLLNNKI----DLKNKLEQHMKII-NTDNIIQKNEKlnLLNNLNKEKEKIEKQLSDTKINNLK- 958
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1278 rkelAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEA-QTKLSDDLQREKESAQQLVDNLKV 1356
Cdd:PTZ00440 959 ----MQIEKTLEYYDKSKENINGNDGTHLEKLDKEKDEWEHFKSEIDKLNVNYNIlNKKIDDLIKKQHDDIIELIDKLIK 1034
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1357 ELDKERKElaQVKSVIEAQTKLSDDLQrqkeSAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLVD 1436
Cdd:PTZ00440 1035 EKGKEIEE--KVDQYISLLEKMKTKLS----SFHFNIDIKKYKNPKIKEEIKLLEEKVEALLKKIDENKNKLIEIKNKSH 1108
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1437 NLKMELDKERKELAQVKSaigaqtKLSDDLEcqkESVQQLVDNLKvELEKERKELAKVNSAFEAQTK----LSDDL--KL 1510
Cdd:PTZ00440 1109 EHVVNADKEKNKQTEHYN------KKKKSLE---KIYKQMEKTLK-ELENMNLEDITLNEVNEIEIEyeriLIDHIveQI 1178
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1511 QKEDAQREVFLVKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKSSQLQVEtfKV 1590
Cdd:PTZ00440 1179 NNEAKKSKTIMEEIESYKKDIDQVKKNMSKERNDHLTTFEYNAYYDKATASYENIEELTTEAKGLKGEANRSTNVD--EL 1256
|
1050 1060 1070 1080 1090 1100 1110
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442616328 1591 ECLHHQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEH------------NQVKDQLAQITDIPKVVELQ 1656
Cdd:PTZ00440 1257 KEIKLQVFSYLQQVIKENNKMENALHEIKNMYEFLISIDSEKILKEilnstkkaeefsNDAKKELEKTDNLIKQVEAK 1334
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
1222-1532 |
7.00e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 41.75 E-value: 7.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1222 QQLVDNLKVELEKERKELAQVKSVIEaqtklsdDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQ-TKLSDDLQR 1300
Cdd:PRK04778 111 ESLLDLIEEDIEQILEELQELLESEE-------KNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQlENLEEEFSQ 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1301 QKE--------SAQQLVDNLKVELDKERKELAQVNSAF-EAQTKLSDDLQREKESAQQLVD--------NLKVELDKERK 1363
Cdd:PRK04778 184 FVEltesgdyvEAREILDQLEEELAALEQIMEEIPELLkELQTELPDQLQELKAGYRELVEegyhldhlDIEKEIQDLKE 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1364 ELAQVKSVIEAQ--TKLSDDLQRQKESAQQLVDNLKVELDkerkelAKvKSVIEAQTKLSDDLQRQKESAQQLVDNLKM- 1440
Cdd:PRK04778 264 QIDENLALLEELdlDEAEEKNEEIQERIDQLYDILEREVK------AR-KYVEKNSDTLPDFLEHAKEQNKELKEEIDRv 336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1441 ---------ELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKvELEKERKELAkvnsafEAQTKLSDDLK-L 1510
Cdd:PRK04778 337 kqsytlnesELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELE-EILKQLEEIE------KEQEKLSEMLQgL 409
|
330 340
....*....|....*....|..
gi 442616328 1511 QKEDAQREVFLvkERLVKEKRE 1532
Cdd:PRK04778 410 RKDELEAREKL--ERYRNKLHE 429
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1650-1861 |
8.00e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 8.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1650 PKVVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELIEFYRNRVEA- 1728
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARAl 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1729 ---------LERLLLASN-----QELEELNSIQSNQAEGVRDLgdtysaaegrqtESDQDKERYQKLALDCKilQAKYRD 1794
Cdd:COG3883 96 yrsggsvsyLDVLLGSESfsdflDRLSALSKIADADADLLEEL------------KADKAELEAKKAELEAK--LAELEA 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442616328 1795 AKDEIKRCEKKIKDQRLEMEGKLEKMKNKMRSLYTAEVTRMKEKQERDAAKSASELEALTAQNAKYE 1861
Cdd:COG3883 162 LKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAA 228
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1361-1618 |
8.11e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 8.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1361 ERKELAQVKSVIEAQTKLSDDLQRQK-ESAQQlvDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKE-SAQQlvDNL 1438
Cdd:pfam17380 267 ENEFLNQLLHIVQHQKAVSERQQQEKfEKMEQ--ERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAiYAEQ--ERM 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1439 KMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVdnlKVELEKERKElAKVNSAFEAQTKLsddlKLQKEDAQRE 1518
Cdd:pfam17380 343 AMERERELERIRQEERKRELERIRQEEIAMEISRMRELE---RLQMERQQKN-ERVRQELEAARKV----KILEEERQRK 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1519 VFLVKERLVKEKREFEVklATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKSSQLQVETFKVEclhhqlk 1598
Cdd:pfam17380 415 IQQQKVEMEQIRAEQEE--ARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRD------- 485
|
250 260
....*....|....*....|
gi 442616328 1599 semathNSLVEDLNRKLAEK 1618
Cdd:pfam17380 486 ------RKRAEEQRRKILEK 499
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
1058-1323 |
8.21e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 40.66 E-value: 8.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1058 ELKDLKNKLKSSDEKIAQIKETYEEQIKALQakcDMEAKKNEHLE-----RNQNQSLTQLKEDALENCVLMSTKLEELQA 1132
Cdd:COG1340 9 SLEELEEKIEELREEIEELKEKRDELNEELK---ELAEKRDELNAqvkelREEAQELREKRDELNEKVKELKEERDELNE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1133 KLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQ---KESGQQLVDNLKvELEKE---RKELAHVNSAIGA 1206
Cdd:COG1340 86 KLNELREELDELRKELAELNKAGGSIDKLRKEIERLEWRQQTEvlsPEEEKELVEKIK-ELEKElekAKKALEKNEKLKE 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1207 QTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNS 1286
Cdd:COG1340 165 LRAELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEAQEKADELHEEIIELQKELRELRK 244
|
250 260 270
....*....|....*....|....*....|....*..
gi 442616328 1287 AFEAQTKLSDDLQRQKESAqqlvdnlkvELDKERKEL 1323
Cdd:COG1340 245 ELKKLRKKQRALKREKEKE---------ELEEKAEEI 272
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
828-1639 |
8.46e-03 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 41.74 E-value: 8.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 828 KNEELAKQNINGIIKRNKFITSLEVNTEKVKQY-----ITDLEEEAFKRKQKVVQLENTLSKEQSNAKEMAQRLDIAQQE 902
Cdd:PTZ00440 1602 KEKQLMEAEYKKLNEIYSDVDNIEKELKKHKKNyeiglLEKVIEINKNIKLYMDSTKESLNSLVNNFSSLFNNFYLNKYN 1681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 903 IKDYHVEAIRFINTIRDRLQQDFNGVNTPqqlgtcMTEFLkmydQMEVRYEESSSLVEKLTESQAKLEMQVAELQVELeN 982
Cdd:PTZ00440 1682 INENLEKYKKKLNEIYNEFMESYNIIQEK------MKEVS----NDDVDYNEAKTLREEAQKEEVNLNNKEEEAKKYL-N 1750
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 983 KDTNQHSGALIKQLNDTIQNLEKvnaKLSEDNTVSHTVHSKLNesllkaqkeldlraKIIENLEASErnlsmklcELKDL 1062
Cdd:PTZ00440 1751 DIKKQESFRFILYMKEKLDELSK---MCKQQYNIVDEGYNYIK--------------KKIEYIKTLN--------DENNL 1805
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1063 KNKLKSSDEKIAQIKE----TYEEQIKALQAKCDMEAKKNeHLERNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQ 1138
Cdd:PTZ00440 1806 SDSLNQAEDKNKEVANlthyTNKNEAKNLLGHVVKSANFI-GIKIMTGLQPTELTPDASLETAPELTFESENNSDLELDH 1884
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1139 QLvdSQKLELDMNRKELALVKSAYEAqTKLSDDLQRQKESGQQLVDNLK--VELEKERKELA-HVNSAIGAQTKLSDDLE 1215
Cdd:PTZ00440 1885 LS--SNKNELDVYKNIQDAYKSSLQI-LKYSDDIDKKQRDCNKLVEDGNeiYLKSTAINELKnMINSVKNKESAISNKID 1961
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1216 cqkesgqqLVDNLKVELEKERKELAQVKSVIE--AQTKLSDDLQREKESAQQLVDNLKVELDKERkelaqvnsaFEAQTK 1293
Cdd:PTZ00440 1962 --------NVSNKLSELNKITCNDESYDEILEkeEYEELKDLRNSFNQEKAETLNNLKLNKIKED---------FNSYKN 2024
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1294 LSDDLQRQkesaqqlVDNLKVElDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLkveLDKERK-ELAQVKSVI 1372
Cdd:PTZ00440 2025 LLDELEKS-------VKTLKAS-ENIKKIVENKKTSIDAINTNIEDIEKEIESINPSLDEL---LKKGHKiEISRYTSII 2093
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1373 EA-QTKLSDDLQR---QKESAQQLVDNLKV-------------ELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLV 1435
Cdd:PTZ00440 2094 DNvQTKISNDSKNindIEKKAQIYLAYIKNnynsikkdistlnEYFDEKQVSNYILTNIDKANKLSSELSEAVTNSEEII 2173
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1436 DNLKMEL--DKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLK-VELEKERKELAKVNSAFEAQTKLSDDLKLQK 1512
Cdd:PTZ00440 2174 ENIKKEIieINENTEMNTLENTADKLKELYENLKKKKNIINNIYKKINfIKLQEIENSSEKYNDISKLFNNVVETQKKKL 2253
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1513 EDAQREVFLVKERL-VKEKREFEV-KLATLEDIIETLEMRCTQMEEERAT-AYEQINKLENRCQEKDNVKSSQL--QVET 1587
Cdd:PTZ00440 2254 LDNKNKINNIKDKInDKEKELINVdSSFTLESIKTFNEIYDDIKSNIGDLyKLEDTNNDELKKVKLYIENITHLlnRINT 2333
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*.
gi 442616328 1588 FKVECLHHQLKSEMATHN-SLVEDLN---RKLAEKVSKLDFVQSRLMTEIAEHNQV 1639
Cdd:PTZ00440 2334 LINDLDNYQDENYGKDKNiELNNENNsyiIKTKEKINNLKEEFSKLLKNIKRNNTL 2389
|
|
| DUF4686 |
pfam15742 |
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins ... |
1318-1571 |
8.97e-03 |
|
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins in this family are typically between 498 and 775 amino acids in length. There is a conserved DLK sequence motif.
Pssm-ID: 464838 [Multi-domain] Cd Length: 384 Bit Score: 40.82 E-value: 8.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1318 KERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERK----------ELAQVKS-VIEAQTKLSDdLQRQK 1386
Cdd:pfam15742 59 KIKAELKQAQQKLLDSTKMCSSLTAEWKHCQQKIRELELEVLKQAQsiksqnslqeKLAQEKSrVADAEEKILE-LQQKL 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1387 ESAQQLVDNLKVELDKERKElAKVKSVIEAQTKLSDDLQRQkESAQQLVDNLKMELDKERKELaQVKSAIGAQT--KLSD 1464
Cdd:pfam15742 138 EHAHKVCLTDTCILEKKQLE-ERIKEASENEAKLKQQYQEE-QQKRKLLDQNVNELQQQVRSL-QDKEAQLEMTnsQQQL 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1465 DLECQKESVQQLVDNLKVELE--KERKELA-KVNSAFEAQTKLSDDLK--LQKEDAQREVF------------LVKERLV 1527
Cdd:pfam15742 215 RIQQQEAQLKQLENEKRKSDEhlKSNQELSeKLSSLQQEKEALQEELQqvLKQLDVHVRKYnekhhhhkaklrRAKDRLV 294
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 442616328 1528 KEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKL--ENR 1571
Cdd:pfam15742 295 HEVEQRDERIKQLENEIGILQQQSEKEKAFQKQVTAQNEILllEKR 340
|
|
| PspA_IM30 |
pfam04012 |
PspA/IM30 family; This family includes PspA a protein that suppresses sigma54-dependent ... |
1348-1474 |
9.02e-03 |
|
PspA/IM30 family; This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homolog in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma(54) containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator.
Pssm-ID: 461130 [Multi-domain] Cd Length: 215 Bit Score: 40.05 E-value: 9.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1348 QQLVDNLKVELDKERKELAQVKSVieaQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKvksvieaqtklsdDLQRQ 1427
Cdd:pfam04012 28 EQAIRDMQSELVKARQALAQTIAR---QKQLERRLEQQTEQAKKLEEKAQAALTKGNEELAR-------------EALAE 91
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 442616328 1428 KESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQ 1474
Cdd:pfam04012 92 KKSLEKQAEALETQLAQQRSAVEQLRKQLAALETKIQQLKAKKNLLK 138
|
|
| PLN03188 |
PLN03188 |
kinesin-12 family protein; Provisional |
1373-1592 |
9.16e-03 |
|
kinesin-12 family protein; Provisional
Pssm-ID: 215621 [Multi-domain] Cd Length: 1320 Bit Score: 41.46 E-value: 9.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1373 EAQTK---LSDDLQRQKESAQQLVDNLKVELDKERKELAKVKsviEAQTKLSDDLQRQKESAQQLVDNLKMELDKERK-- 1447
Cdd:PLN03188 1058 EAESKwisLAEELRTELDASRALAEKQKHELDTEKRCAEELK---EAMQMAMEGHARMLEQYADLEEKHIQLLARHRRiq 1134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1448 -ELAQVKSAI------GAQTKLSDDLECQkesvqqlVDNLKVELEKERKELAKVNSAFEAQTKlsddlklqkeDAQREVF 1520
Cdd:PLN03188 1135 eGIDDVKKAAaragvrGAESKFINALAAE-------ISALKVEREKERRYLRDENKSLQAQLR----------DTAEAVQ 1197
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442616328 1521 LVKERLVKEKREfevklatlEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDN-----VKSSQLQVETFKVEC 1592
Cdd:PLN03188 1198 AAGELLVRLKEA--------EEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEIStlnqlVAESRLPKEAIRPAC 1266
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1156-1498 |
9.54e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.04 E-value: 9.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1156 ALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKE 1235
Cdd:COG4372 27 AALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1236 RKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFE-AQTKLSDDLQRQKESAQQLVDNLKV 1314
Cdd:COG4372 107 QEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLEsLQEELAALEQELQALSEAEAEQALD 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1315 ELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVD 1394
Cdd:COG4372 187 ELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELA 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1395 NLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQ 1474
Cdd:COG4372 267 ILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLL 346
|
330 340
....*....|....*....|....
gi 442616328 1475 QLVDNLKVELEKERKELAKVNSAF 1498
Cdd:COG4372 347 LVGLLDNDVLELLSKGAEAGVADG 370
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1031-1410 |
9.71e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 9.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1031 AQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKcdmeakknEHLERNQNQsLT 1110
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAE--------REIAELEAE-LE 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1111 QLKEDalencvlmSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVD-NLKVE 1189
Cdd:COG4913 679 RLDAS--------SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARlELRAL 750
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1190 LEKERKELAhvnsaigaqtklsddlecQKESGQQLVDNLKVELEKERKELAQvksvieAQTKLSDDLQREKESAQQLVDN 1269
Cdd:COG4913 751 LEERFAAAL------------------GDAVERELRENLEERIDALRARLNR------AEEELERAMRAFNREWPAETAD 806
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1270 LKVELD------KERKELAQVN-SAFEAQTKlsddlQRQKESAQQLVDNLKVELDKERKE----LAQVNSA-----FEAQ 1333
Cdd:COG4913 807 LDADLEslpeylALLDRLEEDGlPEYEERFK-----ELLNENSIEFVADLLSKLRRAIREikerIDPLNDSlkripFGPG 881
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442616328 1334 TKLSDDLQREKesaqqlvdnlkvelDKERKEL-AQVKSVIEAQTKLSDDLQRQKESA-QQLVDNL-KVELDKERKELAKV 1410
Cdd:COG4913 882 RYLRLEARPRP--------------DPEVREFrQELRAVTSGASLFDEELSEARFAAlKRLIERLrSEEEESDRRWRARV 947
|
|
| |
