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Conserved domains on  [gi|392901714|ref|NP_001255777|]
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Methanethiol oxidase [Caenorhabditis elegans]

Protein Classification

selenium-binding family protein( domain architecture ID 10529529)

selenium-binding family protein similar to human methanethiol oxidase (also called selenium-binding protein 1 or 56 kDa selenium-binding protein) that catalyzes the oxidation of methanethiol, an organosulfur compound known to be produced in substantial amounts by gut bacteria, and may be involved in intra-Golgi protein transport

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SBP56 pfam05694
56kDa selenium binding protein (SBP56); This family consists of several eukaryotic selenium ...
 9-471 0e+00

56kDa selenium binding protein (SBP56); This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport. The Lotus japonicus homolog of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins, in vesicular Golgi transport.


:

Pssm-ID: 461716  Cd Length: 453  Bit Score: 753.76  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392901714    9 CHGGPGYASPADAIKGPREEVLFVTAPNAADG---PDAIFTVDVNPESDTFCQVISRVDVPHIGDEVHHTGWNACSSCHD 85
Cdd:pfam05694   1 CKPGPGYASPLDAMKAPREKLAYVAALYPGTGinkPDYLATVDVDPKSPTYGQVVHRLPMPNIGDELHHFGWNACSSCHG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392901714   86 KPTEKRSHLIVPCLNSDRIYIINVE-NERKIYLEHTIEPSKLH-SLNLSFPHTSHCLADGNIMISTLGEANGTPSGNFLL 163
Cdd:pfam05694  81 DPSKERRYLIVPGLRSSRIYIVDTKtDPRAPRLVKVIEPEEVAeKTGYSRPHTVHCLPDGEIYISALGDADGNGPGGFLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392901714  164 LDGKTFEPKGTWPADEKTVPFNYDFWYQPRRNVMISTEWGSPNHIKKGFNPAHVGEGLYGNSVHIFEWDSKKYLQTIDLP 243
Cdd:pfam05694 161 LDHETFEVKGRWEKDRGPQLFGYDFWYQPRHNVMISSEWGAPNTFEDGFNPEDLEDGLYGHRLHFWDWSTRKHKQTIDLG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392901714  244 qPLGALPLEVRFLHEPTSEHAFVGCALGSGIFRIHPVEENstTHAATLVAFIPSKKVSGWALPEMPALITDILISMDDRF 323
Cdd:pfam05694 241 -EEGQMPLELRFLHDPTKAHGFVGCALSSSIWRWYKNDGG--KWAAEKVIEIPAEPVEGWILPPMPPLVTDILISLDDRF 317

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392901714  324 LYVSCWLHGDIRQYDISDPLKVKLNSQVYIGGSVHTEsnvkvlegekpiEALYVKGRKIEGGPQMLQLSLDGKRLYVTTS 403
Cdd:pfam05694 318 LYVSCWLHGDLRQYDISDPFNPRLTGQVRLGGIIRRA------------PHPAVKGRRLNGGPQMVQLSLDGKRLYVTNS 385

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 392901714  404 LYKKWDDQFYPEHVKSGATMVQVNIDPESGKMEINRDFLIDFGKIEGGPYLAHEMRYPGGDCTSDIWI 471
Cdd:pfam05694 386 LYSSWDDQFYPDGVKKGGWMLKIDVDPETGGLSLNPNFFVDFGKEPDGPARAHEMRYPGGDCSSDIWC 453
 
Name Accession Description Interval E-value
SBP56 pfam05694
56kDa selenium binding protein (SBP56); This family consists of several eukaryotic selenium ...
 9-471 0e+00

56kDa selenium binding protein (SBP56); This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport. The Lotus japonicus homolog of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins, in vesicular Golgi transport.


Pssm-ID: 461716  Cd Length: 453  Bit Score: 753.76  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392901714    9 CHGGPGYASPADAIKGPREEVLFVTAPNAADG---PDAIFTVDVNPESDTFCQVISRVDVPHIGDEVHHTGWNACSSCHD 85
Cdd:pfam05694   1 CKPGPGYASPLDAMKAPREKLAYVAALYPGTGinkPDYLATVDVDPKSPTYGQVVHRLPMPNIGDELHHFGWNACSSCHG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392901714   86 KPTEKRSHLIVPCLNSDRIYIINVE-NERKIYLEHTIEPSKLH-SLNLSFPHTSHCLADGNIMISTLGEANGTPSGNFLL 163
Cdd:pfam05694  81 DPSKERRYLIVPGLRSSRIYIVDTKtDPRAPRLVKVIEPEEVAeKTGYSRPHTVHCLPDGEIYISALGDADGNGPGGFLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392901714  164 LDGKTFEPKGTWPADEKTVPFNYDFWYQPRRNVMISTEWGSPNHIKKGFNPAHVGEGLYGNSVHIFEWDSKKYLQTIDLP 243
Cdd:pfam05694 161 LDHETFEVKGRWEKDRGPQLFGYDFWYQPRHNVMISSEWGAPNTFEDGFNPEDLEDGLYGHRLHFWDWSTRKHKQTIDLG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392901714  244 qPLGALPLEVRFLHEPTSEHAFVGCALGSGIFRIHPVEENstTHAATLVAFIPSKKVSGWALPEMPALITDILISMDDRF 323
Cdd:pfam05694 241 -EEGQMPLELRFLHDPTKAHGFVGCALSSSIWRWYKNDGG--KWAAEKVIEIPAEPVEGWILPPMPPLVTDILISLDDRF 317

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392901714  324 LYVSCWLHGDIRQYDISDPLKVKLNSQVYIGGSVHTEsnvkvlegekpiEALYVKGRKIEGGPQMLQLSLDGKRLYVTTS 403
Cdd:pfam05694 318 LYVSCWLHGDLRQYDISDPFNPRLTGQVRLGGIIRRA------------PHPAVKGRRLNGGPQMVQLSLDGKRLYVTNS 385

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 392901714  404 LYKKWDDQFYPEHVKSGATMVQVNIDPESGKMEINRDFLIDFGKIEGGPYLAHEMRYPGGDCTSDIWI 471
Cdd:pfam05694 386 LYSSWDDQFYPDGVKKGGWMLKIDVDPETGGLSLNPNFFVDFGKEPDGPARAHEMRYPGGDCSSDIWC 453
 
Name Accession Description Interval E-value
SBP56 pfam05694
56kDa selenium binding protein (SBP56); This family consists of several eukaryotic selenium ...
 9-471 0e+00

56kDa selenium binding protein (SBP56); This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport. The Lotus japonicus homolog of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins, in vesicular Golgi transport.


Pssm-ID: 461716  Cd Length: 453  Bit Score: 753.76  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392901714    9 CHGGPGYASPADAIKGPREEVLFVTAPNAADG---PDAIFTVDVNPESDTFCQVISRVDVPHIGDEVHHTGWNACSSCHD 85
Cdd:pfam05694   1 CKPGPGYASPLDAMKAPREKLAYVAALYPGTGinkPDYLATVDVDPKSPTYGQVVHRLPMPNIGDELHHFGWNACSSCHG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392901714   86 KPTEKRSHLIVPCLNSDRIYIINVE-NERKIYLEHTIEPSKLH-SLNLSFPHTSHCLADGNIMISTLGEANGTPSGNFLL 163
Cdd:pfam05694  81 DPSKERRYLIVPGLRSSRIYIVDTKtDPRAPRLVKVIEPEEVAeKTGYSRPHTVHCLPDGEIYISALGDADGNGPGGFLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392901714  164 LDGKTFEPKGTWPADEKTVPFNYDFWYQPRRNVMISTEWGSPNHIKKGFNPAHVGEGLYGNSVHIFEWDSKKYLQTIDLP 243
Cdd:pfam05694 161 LDHETFEVKGRWEKDRGPQLFGYDFWYQPRHNVMISSEWGAPNTFEDGFNPEDLEDGLYGHRLHFWDWSTRKHKQTIDLG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392901714  244 qPLGALPLEVRFLHEPTSEHAFVGCALGSGIFRIHPVEENstTHAATLVAFIPSKKVSGWALPEMPALITDILISMDDRF 323
Cdd:pfam05694 241 -EEGQMPLELRFLHDPTKAHGFVGCALSSSIWRWYKNDGG--KWAAEKVIEIPAEPVEGWILPPMPPLVTDILISLDDRF 317

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392901714  324 LYVSCWLHGDIRQYDISDPLKVKLNSQVYIGGSVHTEsnvkvlegekpiEALYVKGRKIEGGPQMLQLSLDGKRLYVTTS 403
Cdd:pfam05694 318 LYVSCWLHGDLRQYDISDPFNPRLTGQVRLGGIIRRA------------PHPAVKGRRLNGGPQMVQLSLDGKRLYVTNS 385

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 392901714  404 LYKKWDDQFYPEHVKSGATMVQVNIDPESGKMEINRDFLIDFGKIEGGPYLAHEMRYPGGDCTSDIWI 471
Cdd:pfam05694 386 LYSSWDDQFYPDGVKKGGWMLKIDVDPETGGLSLNPNFFVDFGKEPDGPARAHEMRYPGGDCSSDIWC 453
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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