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Conserved domains on  [gi|392894610|ref|NP_001254890|]
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J domain-containing protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK14297 super family cl32988
molecular chaperone DnaJ;
34-126 5.13e-33

molecular chaperone DnaJ;


The actual alignment was detected with superfamily member PRK14297:

Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 127.21  E-value: 5.13e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPSENQLD------- 106
Cdd:PRK14297   5 DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAggfgsgg 84

                         90       100
                 ....*....|....*....|
gi 392894610 107 FEGFDVSEMGGVGRVFGALF 126
Cdd:PRK14297  85 FGGFDFSDMGGFGDIFDSFF 104
PLN02281 super family cl31857
chlorophyllide a oxygenase
 297-370 3.65e-03

chlorophyllide a oxygenase


The actual alignment was detected with superfamily member PLN02281:

Pssm-ID: 177920 [Multi-domain]  Cd Length: 536  Bit Score: 39.33  E-value: 3.65e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 392894610 297 ITFLPVEPSAVEQLNEIQDTEKSISIIKKEMLDFQREFTEAKRKYDEAVAKLKvqddTILKALAHREELYNEVL 370
Cdd:PLN02281 100 LTIMILHDKVVDVLNPLAREYKSIGTVKKELAGLQEELSKAHQQVHISEARVS----TALDKLAHMEELVNDRL 169
 
Name Accession Description Interval E-value
PRK14297 PRK14297
molecular chaperone DnaJ;
34-126 5.13e-33

molecular chaperone DnaJ;


Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 127.21  E-value: 5.13e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPSENQLD------- 106
Cdd:PRK14297   5 DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAggfgsgg 84

                         90       100
                 ....*....|....*....|
gi 392894610 107 FEGFDVSEMGGVGRVFGALF 126
Cdd:PRK14297  85 FGGFDFSDMGGFGDIFDSFF 104
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 34-96 1.78e-32

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 116.42  E-value: 1.78e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 392894610   34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYD 96
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEAEEKFKEINEAYEVLSDPEKRAIYD 63
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 34-126 2.03e-32

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 125.02  E-value: 2.03e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610   34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPnDAHAQEEFKKVSIAYSVLSDPNKRRQYDV-------SGPSENQLD 106
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQfghagfnGGGGGGGGG 79

                          90       100
                  ....*....|....*....|
gi 392894610  107 FEGFDVSEMGGVGRVFGALF 126
Cdd:TIGR02349  80 FNGFDIGFFGDFGDIFGDFF 99
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 34-99 2.56e-31

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 115.96  E-value: 2.56e-31
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSG 99
Cdd:COG0484    1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGDPEAEEKFKEINEAYEVLSDPEKRAAYDRFG 66
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 34-88 4.40e-24

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 93.76  E-value: 4.40e-24
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSD 88
Cdd:cd06257    1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55
DnaJ smart00271
DnaJ molecular chaperone homology domain;
33-91 1.06e-22

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 90.37  E-value: 1.06e-22
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610    33 MDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAH-AQEEFKKVSIAYSVLSDPNK 91
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEeAEEKFKEINEAYEVLSDPEK 60
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
34-112 3.62e-21

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 94.50  E-value: 3.62e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNpNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSG----PSENQLDFEG 109
Cdd:NF037946   6 DYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRN-KAPDAAEIFAEINEAYEVLSNPEKRANYDKYGhdgvDGEGGFGFDA 84


                 ...
gi 392894610 110 FDV 112
Cdd:NF037946  85 FDV 87
PLN02281 PLN02281
chlorophyllide a oxygenase
 297-370 3.65e-03

chlorophyllide a oxygenase


Pssm-ID: 177920 [Multi-domain]  Cd Length: 536  Bit Score: 39.33  E-value: 3.65e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 392894610 297 ITFLPVEPSAVEQLNEIQDTEKSISIIKKEMLDFQREFTEAKRKYDEAVAKLKvqddTILKALAHREELYNEVL 370
Cdd:PLN02281 100 LTIMILHDKVVDVLNPLAREYKSIGTVKKELAGLQEELSKAHQQVHISEARVS----TALDKLAHMEELVNDRL 169
 
Name Accession Description Interval E-value
PRK14297 PRK14297
molecular chaperone DnaJ;
34-126 5.13e-33

molecular chaperone DnaJ;


Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 127.21  E-value: 5.13e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPSENQLD------- 106
Cdd:PRK14297   5 DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAggfgsgg 84

                         90       100
                 ....*....|....*....|
gi 392894610 107 FEGFDVSEMGGVGRVFGALF 126
Cdd:PRK14297  85 FGGFDFSDMGGFGDIFDSFF 104
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 31-127 1.13e-32

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 126.03  E-value: 1.13e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  31 SEMDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDvsgpsenQLDFEGF 110
Cdd:PRK10767   2 AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYD-------QYGHAAF 74

                         90       100
                 ....*....|....*....|....
gi 392894610 111 DVSEMGG-------VGRVFGALFS 127
Cdd:PRK10767  75 EQGGGGGgfgggggFGDIFGDIFG 98
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 34-96 1.78e-32

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 116.42  E-value: 1.78e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 392894610   34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYD 96
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEAEEKFKEINEAYEVLSDPEKRAIYD 63
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 34-126 2.03e-32

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 125.02  E-value: 2.03e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610   34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPnDAHAQEEFKKVSIAYSVLSDPNKRRQYDV-------SGPSENQLD 106
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQfghagfnGGGGGGGGG 79

                          90       100
                  ....*....|....*....|
gi 392894610  107 FEGFDVSEMGGVGRVFGALF 126
Cdd:TIGR02349  80 FNGFDIGFFGDFGDIFGDFF 99
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 34-99 2.56e-31

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 115.96  E-value: 2.56e-31
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSG 99
Cdd:COG0484    1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGDPEAEEKFKEINEAYEVLSDPEKRAAYDRFG 66
PRK14278 PRK14278
chaperone protein DnaJ; Provisional
 34-126 3.87e-28

chaperone protein DnaJ; Provisional


Pssm-ID: 237654 [Multi-domain]  Cd Length: 378  Bit Score: 113.61  E-value: 3.87e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAhAQEEFKKVSIAYSVLSDPNKRRQYDVSG-PSENQLDFEGFDV 112
Cdd:PRK14278   4 DYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEE-AQEKFKEISVAYEVLSDPEKRRIVDLGGdPLESAGGGGGGFG 82

                         90
                 ....*....|....
gi 392894610 113 SEMGGVGRVFGALF 126
Cdd:PRK14278  83 GGFGGLGDVFEAFF 96
PRK14277 PRK14277
chaperone protein DnaJ; Provisional
 34-127 8.00e-28

chaperone protein DnaJ; Provisional


Pssm-ID: 184599 [Multi-domain]  Cd Length: 386  Bit Score: 112.97  E-value: 8.00e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPS------ENQLDF 107
Cdd:PRK14277   6 DYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAafdpggFGQGGF 85

                         90       100
                 ....*....|....*....|....*.
gi 392894610 108 ------EGFDVSEMGGVGRVFGALFS 127
Cdd:PRK14277  86 gqggfgGGGFDFDFGGFGDIFEDIFG 111
SEC63 COG5407
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular ...
 34-94 4.62e-27

Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 444165 [Multi-domain]  Cd Length: 61  Bit Score: 102.00  E-value: 4.62e-27
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQ 94
Cdd:COG5407    1 DPYEVLGVAKTASADEIKKAYRKLAKKYHPDRNKGDPKAEERFKEINEAYELLSDAEKRAR 61
PRK14279 PRK14279
molecular chaperone DnaJ;
27-130 6.77e-27

molecular chaperone DnaJ;


Pssm-ID: 237655 [Multi-domain]  Cd Length: 392  Bit Score: 110.59  E-value: 6.77e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  27 QPKVSEMDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVS-------- 98
Cdd:PRK14279   3 QREWVEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETrrlfaggg 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 392894610  99 ------------GPSENQLDFEGFDVSEM---------GGVGRVFGALFSKLG 130
Cdd:PRK14279  83 fggrrfdggggfGGFGTGGDGAEFNLNDLfdaagrgggGGIGDLFGGLFNRGG 135
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 34-126 1.41e-26

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 109.55  E-value: 1.41e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNpNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPS--ENQLDFEG-F 110
Cdd:PRK14298   6 DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKN-KEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAgiDNQYSAEDiF 84

                         90
                 ....*....|....*.
gi 392894610 111 DVSEMGGVGRVFGALF 126
Cdd:PRK14298  85 RGADFGGFGDIFEMFF 100
PRK14295 PRK14295
molecular chaperone DnaJ;
32-130 5.45e-26

molecular chaperone DnaJ;


Pssm-ID: 237665 [Multi-domain]  Cd Length: 389  Bit Score: 108.01  E-value: 5.45e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  32 EMDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVS-----------GP 100
Cdd:PRK14295   8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEArslfgnggfrpGP 87

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 392894610 101 SENQLDFEGFDVSEM--------------GGVGRVFGALFSKLG 130
Cdd:PRK14295  88 GGGGGGGFNFDLGDLfgggaqggggagggGGLGDVFGGLFNRGG 131
PRK14301 PRK14301
chaperone protein DnaJ; Provisional
 31-126 1.22e-25

chaperone protein DnaJ; Provisional


Pssm-ID: 237668 [Multi-domain]  Cd Length: 373  Bit Score: 106.75  E-value: 1.22e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  31 SEMDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPS--ENQLDFE 108
Cdd:PRK14301   2 SQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAgvNGNGGFG 81

                         90       100
                 ....*....|....*....|
gi 392894610 109 GFDVSE--MGGVGRVFGALF 126
Cdd:PRK14301  82 GFSSAEdiFSHFSDIFGDLF 101
PRK14284 PRK14284
chaperone protein DnaJ; Provisional
 33-130 1.60e-25

chaperone protein DnaJ; Provisional


Pssm-ID: 237658 [Multi-domain]  Cd Length: 391  Bit Score: 106.47  E-value: 1.60e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  33 MDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYD-------------VSG 99
Cdd:PRK14284   1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDrygkdgpfagaggFGG 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 392894610 100 PSENQLD-----FEGFDVSEMGGVGRVFGALFSKLG 130
Cdd:PRK14284  81 AGMGNMEdalrtFMGAFGGEFGGGGSFFEGLFGGLG 116
PRK14292 PRK14292
chaperone protein DnaJ; Provisional
 33-102 1.71e-25

chaperone protein DnaJ; Provisional


Pssm-ID: 237662 [Multi-domain]  Cd Length: 371  Bit Score: 106.13  E-value: 1.71e-25
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  33 MDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPnDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPSE 102
Cdd:PRK14292   2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP 70
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
 34-126 1.14e-24

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 103.69  E-value: 1.14e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPS--ENQ--LDFEG 109
Cdd:PRK14294   5 DYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEglSGTgfSGFSG 84

                         90
                 ....*....|....*..
gi 392894610 110 FDvSEMGGVGRVFGALF 126
Cdd:PRK14294  85 FD-DIFSSFGDIFEDFF 100
PRK14276 PRK14276
chaperone protein DnaJ; Provisional
 32-126 2.76e-24

chaperone protein DnaJ; Provisional


Pssm-ID: 237653 [Multi-domain]  Cd Length: 380  Bit Score: 102.86  E-value: 2.76e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  32 EMDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNpNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPSENQLDF---- 107
Cdd:PRK14276   3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDIN-KEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFggga 81

                         90       100
                 ....*....|....*....|...
gi 392894610 108 ---EGFD-VSEMGGVGRVFGALF 126
Cdd:PRK14276  82 ggfGGFDgSGGFGGFEDIFSSFF 104
PRK14289 PRK14289
molecular chaperone DnaJ;
34-130 3.05e-24

molecular chaperone DnaJ;


Pssm-ID: 237660 [Multi-domain]  Cd Length: 386  Bit Score: 102.99  E-value: 3.05e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYD------VSGPSENQlDF 107
Cdd:PRK14289   6 DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDqfghagVGGAAGGG-GF 84

                         90       100
                 ....*....|....*....|...
gi 392894610 108 EGFDVSeMGGVGRVFGALFSKLG 130
Cdd:PRK14289  85 SGEGMS-MEDIFSMFGDIFGGHG 106
PRK14291 PRK14291
chaperone protein DnaJ; Provisional
 34-130 3.51e-24

chaperone protein DnaJ; Provisional


Pssm-ID: 237661 [Multi-domain]  Cd Length: 382  Bit Score: 102.54  E-value: 3.51e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNdAHAQEEFKKVSIAYSVLSDPNKRRQYD------VSGPSENQLDF 107
Cdd:PRK14291   4 DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDqfghaaFSGSGQQQQGQ 82

                         90       100
                 ....*....|....*....|...
gi 392894610 108 EGFDVSEMGGVGRVFGALFSKLG 130
Cdd:PRK14291  83 EGFSDFGGGNIEDILEDVFDIFG 105
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 34-88 4.40e-24

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 93.76  E-value: 4.40e-24
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSD 88
Cdd:cd06257    1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55
PRK14281 PRK14281
chaperone protein DnaJ; Provisional
 34-124 1.87e-23

chaperone protein DnaJ; Provisional


Pssm-ID: 237657 [Multi-domain]  Cd Length: 397  Bit Score: 100.65  E-value: 1.87e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDvsgpsenQLDFEGFDVS 113
Cdd:PRK14281   4 DYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYD-------QFGHAGVGSS 76

                         90
                 ....*....|.
gi 392894610 114 EMGGVGRVFGA 124
Cdd:PRK14281  77 AASGGGPGYGG 87
PRK14293 PRK14293
molecular chaperone DnaJ;
34-130 2.90e-23

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 100.06  E-value: 2.90e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNpNDAHAQEEFKKVSIAYSVLSDPNKRRQYD------VSGPSenqldf 107
Cdd:PRK14293   4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVN-KEPGAEDRFKEINRAYEVLSDPETRARYDqfgeagVSGAA------ 76

                         90       100
                 ....*....|....*....|....
gi 392894610 108 eGF-DVSEMGGVGRVFGALFSKLG 130
Cdd:PRK14293  77 -GFpDMGDMGGFADIFETFFSGFG 99
PRK14280 PRK14280
molecular chaperone DnaJ;
30-126 3.17e-23

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 99.80  E-value: 3.17e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  30 VSEMDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNpNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPSENQLDFEG 109
Cdd:PRK14280   1 MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDIN-KEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGG 79

                         90       100
                 ....*....|....*....|..
gi 392894610 110 F-----DVSEMGGVGRVFGALF 126
Cdd:PRK14280  80 GgfgggDFGGGFGFEDIFSSFF 101
PRK14286 PRK14286
chaperone protein DnaJ; Provisional
 30-126 4.24e-23

chaperone protein DnaJ; Provisional


Pssm-ID: 172774 [Multi-domain]  Cd Length: 372  Bit Score: 99.29  E-value: 4.24e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  30 VSEMDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPSENQLDFEG 109
Cdd:PRK14286   1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGG 80

                         90       100
                 ....*....|....*....|....
gi 392894610 110 F------DVSEM-GGVGRVFGALF 126
Cdd:PRK14286  81 FgqgaytDFSDIfGDFGDIFGDFF 104
DnaJ smart00271
DnaJ molecular chaperone homology domain;
33-91 1.06e-22

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 90.37  E-value: 1.06e-22
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610    33 MDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAH-AQEEFKKVSIAYSVLSDPNK 91
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEeAEEKFKEINEAYEVLSDPEK 60
PRK14299 PRK14299
chaperone protein DnaJ; Provisional
 34-130 5.88e-22

chaperone protein DnaJ; Provisional


Pssm-ID: 237667 [Multi-domain]  Cd Length: 291  Bit Score: 95.01  E-value: 5.88e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNpNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPSENQL-------- 105
Cdd:PRK14299   5 DYYAILGVPKNASQDEIKKAFKKLARKYHPDVN-KSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAgwqgpppg 83

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 392894610 106 -----DFEGFDVSEM-----------GGVGRvFGALFSKLG 130
Cdd:PRK14299  84 ppgggDFSGFNVGDFsdffqqlfggrGGFGG-FGDLFGSVG 123
PRK14290 PRK14290
chaperone protein DnaJ; Provisional
 34-126 1.47e-21

chaperone protein DnaJ; Provisional


Pssm-ID: 172778 [Multi-domain]  Cd Length: 365  Bit Score: 95.00  E-value: 1.47e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNP-NDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPSENQLDFEGF-- 110
Cdd:PRK14290   4 DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPgNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFnw 83

                         90
                 ....*....|....*..
gi 392894610 111 -DVSEMGGVGRVFGALF 126
Cdd:PRK14290  84 dNFTHFSDINDIFNQIF 100
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
34-112 3.62e-21

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 94.50  E-value: 3.62e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNpNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSG----PSENQLDFEG 109
Cdd:NF037946   6 DYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRN-KAPDAAEIFAEINEAYEVLSNPEKRANYDKYGhdgvDGEGGFGFDA 84


                 ...
gi 392894610 110 FDV 112
Cdd:NF037946  85 FDV 87
PRK14283 PRK14283
chaperone protein DnaJ; Provisional
 34-130 4.89e-21

chaperone protein DnaJ; Provisional


Pssm-ID: 184604 [Multi-domain]  Cd Length: 378  Bit Score: 93.74  E-value: 4.89e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNpNDAHAQEEFKKVSIAYSVLSDPNKRRQYD------VSGPSE----N 103
Cdd:PRK14283   6 DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVS-EEEGAEEKFKEISEAYAVLSDDEKRQRYDqfghagMDGFSQedifN 84

                         90       100
                 ....*....|....*....|....*..
gi 392894610 104 QLDFEgfDVseMGGVGRVFGALFSKLG 130
Cdd:PRK14283  85 NINFE--DI--FQGFGFGIGNIFDMFG 107
CbpA COG2214
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
34-98 3.00e-20

Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];


Pssm-ID: 441816 [Multi-domain]  Cd Length: 91  Bit Score: 84.38  E-value: 3.00e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPND-AHAQEEFKKVSIAYSVLSDPNKRRQYDVS 98
Cdd:COG2214    6 DHYAVLGVPPDASLEEIRQAYRRLAKLLHPDRGGELkALAEELFQRLNEAYEVLSDPERRAEYDRE 71
PRK14285 PRK14285
chaperone protein DnaJ; Provisional
 34-122 8.69e-20

chaperone protein DnaJ; Provisional


Pssm-ID: 172773 [Multi-domain]  Cd Length: 365  Bit Score: 89.67  E-value: 8.69e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPS--ENQLDFEGFD 111
Cdd:PRK14285   4 DYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTafEGGGGFEGFS 83

                         90
                 ....*....|.
gi 392894610 112 vSEMGGVGRVF 122
Cdd:PRK14285  84 -GGFSGFSDIF 93
PRK14287 PRK14287
chaperone protein DnaJ; Provisional
 30-126 3.31e-19

chaperone protein DnaJ; Provisional


Pssm-ID: 237659 [Multi-domain]  Cd Length: 371  Bit Score: 88.14  E-value: 3.31e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  30 VSEMDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNpNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPSENQLDFEG 109
Cdd:PRK14287   1 MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVN-KAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGG 79

                         90
                 ....*....|....*..
gi 392894610 110 FDVSEMGGVGRVFGALF 126
Cdd:PRK14287  80 GGAGDFGGFSDIFDMFF 96
PRK14296 PRK14296
chaperone protein DnaJ; Provisional
 34-129 4.30e-19

chaperone protein DnaJ; Provisional


Pssm-ID: 237666 [Multi-domain]  Cd Length: 372  Bit Score: 87.69  E-value: 4.30e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNpNDAHAQEEFKKVSIAYSVLSDPNKRRQYD---------VSGPSENQ 104
Cdd:PRK14296   5 DYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLN-KSPDAHDKMVEINEAADVLLDKDKRKQYDqfghaafdgSSGFSSNF 83

                         90       100
                 ....*....|....*....|....*.
gi 392894610 105 LDFEGFdVSEMGGVGRV-FGALFSKL 129
Cdd:PRK14296  84 GDFEDL-FSNMGSSGFSsFTNIFSDF 108
PRK14282 PRK14282
chaperone protein DnaJ; Provisional
 34-99 2.99e-18

chaperone protein DnaJ; Provisional


Pssm-ID: 184603 [Multi-domain]  Cd Length: 369  Bit Score: 85.23  E-value: 2.99e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNP-NDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSG 99
Cdd:PRK14282   5 DYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPeNRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFG 71
PTZ00037 PTZ00037
DnaJ_C chaperone protein; Provisional
 35-99 7.20e-17

DnaJ_C chaperone protein; Provisional


Pssm-ID: 240236 [Multi-domain]  Cd Length: 421  Bit Score: 81.79  E-value: 7.20e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 392894610  35 FYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNdahaQEEFKKVSIAYSVLSDPNKRRQYDVSG 99
Cdd:PTZ00037  30 LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYG 90
PRK14300 PRK14300
chaperone protein DnaJ; Provisional
 34-99 4.06e-15

chaperone protein DnaJ; Provisional


Pssm-ID: 172788 [Multi-domain]  Cd Length: 372  Bit Score: 76.21  E-value: 4.06e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDrNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSG 99
Cdd:PRK14300   4 DYYQILGVSKTASQADLKKAYLKLAKQYHPD-TTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFG 68
PRK14288 PRK14288
molecular chaperone DnaJ;
32-110 4.27e-15

molecular chaperone DnaJ;


Pssm-ID: 172776 [Multi-domain]  Cd Length: 369  Bit Score: 75.88  E-value: 4.27e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  32 EMDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSG------PSENQL 105
Cdd:PRK14288   2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGkkglnqAGASQS 81


                 ....*
gi 392894610 106 DFEGF 110
Cdd:PRK14288  82 DFSDF 86
PRK10266 PRK10266
curved DNA-binding protein;
34-96 6.35e-14

curved DNA-binding protein;


Pssm-ID: 182347 [Multi-domain]  Cd Length: 306  Bit Score: 71.78  E-value: 6.35e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNpNDAHAQEEFKKVSIAYSVLSDPNKRRQYD 96
Cdd:PRK10266   5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVS-KEPDAEARFKEVAEAWEVLSDEQRRAEYD 66
DjlA COG1076
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
31-100 2.90e-10

DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440694 [Multi-domain]  Cd Length: 75  Bit Score: 55.96  E-value: 2.90e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  31 SEMDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRnpndaHAQ---EEFKKVSI--------AYSVLSDPnkrRQYDVSG 99
Cdd:COG1076    2 QLDDAFELLGLPPDADDAELKRAYRKLQREHHPDR-----LAAglpEEEQRLALqkaaaineAYETLKDP---RGIDLAA 73


                 .
gi 392894610 100 P 100
Cdd:COG1076   74 P 74
ZUO1 COG5269
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ...
 34-96 3.14e-08

Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227594 [Multi-domain]  Cd Length: 379  Bit Score: 55.04  E-value: 3.14e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 392894610  34 DFYQLLGVEKM---ASEAEIKSAYRKLALKYHPDRNPNDAH--AQEEFKKVSIAYSVLSDPNKRRQYD 96
Cdd:COG5269   44 DLYALLGLSKYrtkAIPPQILKAHKKKVYKYHPDKTAAGGNkgCDEFFKLIQKAREVLGDRKLRLQYD 111
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 30-99 1.93e-06

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 50.17  E-value: 1.93e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610   30 VSEMDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAhAQEEFKKVSIAYSVLSDPNKRRQYDVSG 99
Cdd:PTZ00341  570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNE-GFHKFKKINEAYQILGDIDKKKMYNKFG 638
djlA PRK09430
co-chaperone DjlA;
34-64 4.87e-06

co-chaperone DjlA;


Pssm-ID: 236512 [Multi-domain]  Cd Length: 267  Bit Score: 47.50  E-value: 4.87e-06
                         10        20        30
                 ....*....|....*....|....*....|.
gi 392894610  34 DFYQLLGVEKMASEAEIKSAYRKLALKYHPD 64
Cdd:PRK09430 201 DAYKVLGVSESDDDQEIKRAYRKLMSEHHPD 231
PHA03102 PHA03102
Small T antigen; Reviewed
 37-127 1.77e-04

Small T antigen; Reviewed


Pssm-ID: 222986 [Multi-domain]  Cd Length: 153  Bit Score: 41.58  E-value: 1.77e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894610  37 QLLGVEKMA--SEAEIKSAYRKLALKYHPDRNPNdahaQEEFKKVSIAYSVLsdpnkrRQYDvsgPSENQLDFEGFDVSE 114
Cdd:PHA03102   9 DLLGLPRSAwgNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKF------RESV---KSLRDLDGEEDSSSE 75

                         90
                 ....*....|....
gi 392894610 115 MGGVG-RVFGALFS 127
Cdd:PHA03102  76 EEDVPsGYVGATFG 89
hscB PRK03578
Fe-S protein assembly co-chaperone HscB;
33-95 4.57e-04

Fe-S protein assembly co-chaperone HscB;


Pssm-ID: 235133 [Multi-domain]  Cd Length: 176  Bit Score: 40.77  E-value: 4.57e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 392894610  33 MDFYQLLGVEKM--ASEAEIKSAYRKLALKYHPDRNpndAHAQEEFKKVSI--------AYSVLSDPNKRRQY 95
Cdd:PRK03578   6 DDHFSLFGLPARfaLDEAALDAAYRTVQAQVHPDRF---AAAGDAEKRVAMqwatraneAYQTLRDPLKRARY 75
PLN02281 PLN02281
chlorophyllide a oxygenase
 297-370 3.65e-03

chlorophyllide a oxygenase


Pssm-ID: 177920 [Multi-domain]  Cd Length: 536  Bit Score: 39.33  E-value: 3.65e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 392894610 297 ITFLPVEPSAVEQLNEIQDTEKSISIIKKEMLDFQREFTEAKRKYDEAVAKLKvqddTILKALAHREELYNEVL 370
Cdd:PLN02281 100 LTIMILHDKVVDVLNPLAREYKSIGTVKKELAGLQEELSKAHQQVHISEARVS----TALDKLAHMEELVNDRL 169
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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