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Conserved domains on  [gi|392891575|ref|NP_001254261|]
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Protein fantom [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
C2-C2_1 super family cl48116
First C2 domain of RPGR-interacting protein 1; This domain is the first, more N-terminal, C2 ...
361-459 4.50e-26

First C2 domain of RPGR-interacting protein 1; This domain is the first, more N-terminal, C2 domain on X-linked retinitis pigmentosa GTPase regulator-interacting proteins, or RPGR-interacting proteins.


The actual alignment was detected with superfamily member pfam11618:

Pssm-ID: 463310  Cd Length: 143  Bit Score: 104.64  E-value: 4.50e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392891575   361 QLETTPIMDAKQHNMDFTTVYDVLVSNLLIHYLQTNGIVIEMYRPASDCYKLLAAATISLIPLFEDSvLRKFCSEIMLKS 440
Cdd:pfam11618   45 ETQTTPVVRGLNPFYDFTSQYKVTVDDLFLQYLQTNSLTLELHQALGVDFKTLAAAQLRLHGLLEDR-GGRIHGTVTLTG 123
                           90       100
                   ....*....|....*....|
gi 392891575   441 V-DTGVEMCTLRYEIEVSQP 459
Cdd:pfam11618  124 VeGEIQIIGTLEYWIRLRVP 143
PHA03269 super family cl29788
envelope glycoprotein C; Provisional
656-797 1.22e-03

envelope glycoprotein C; Provisional


The actual alignment was detected with superfamily member PHA03269:

Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 42.79  E-value: 1.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392891575  656 TPVKEAELHDAEPTSMPPKAPEPTTAPLRRLSTDSSDTSFSHSSKDLFSPPTnPQTYDYEIPAVTPALVDSDGEEEAdri 735
Cdd:PHA03269   24 TNIPIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPT-PAASEKFDPAPAPHQAASRAPDPA--- 99
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 392891575  736 vfdddddeiesVSAVSSQ-RDPEPLEVPERQVENLPSPEDTPRPSDPLKPNGTNESKESTPVT 797
Cdd:PHA03269  100 -----------VAPQLAAaPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPF 151
 
Name Accession Description Interval E-value
C2-C2_1 pfam11618
First C2 domain of RPGR-interacting protein 1; This domain is the first, more N-terminal, C2 ...
361-459 4.50e-26

First C2 domain of RPGR-interacting protein 1; This domain is the first, more N-terminal, C2 domain on X-linked retinitis pigmentosa GTPase regulator-interacting proteins, or RPGR-interacting proteins.


Pssm-ID: 463310  Cd Length: 143  Bit Score: 104.64  E-value: 4.50e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392891575   361 QLETTPIMDAKQHNMDFTTVYDVLVSNLLIHYLQTNGIVIEMYRPASDCYKLLAAATISLIPLFEDSvLRKFCSEIMLKS 440
Cdd:pfam11618   45 ETQTTPVVRGLNPFYDFTSQYKVTVDDLFLQYLQTNSLTLELHQALGVDFKTLAAAQLRLHGLLEDR-GGRIHGTVTLTG 123
                           90       100
                   ....*....|....*....|
gi 392891575   441 V-DTGVEMCTLRYEIEVSQP 459
Cdd:pfam11618  124 VeGEIQIIGTLEYWIRLRVP 143
PHA03269 PHA03269
envelope glycoprotein C; Provisional
656-797 1.22e-03

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 42.79  E-value: 1.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392891575  656 TPVKEAELHDAEPTSMPPKAPEPTTAPLRRLSTDSSDTSFSHSSKDLFSPPTnPQTYDYEIPAVTPALVDSDGEEEAdri 735
Cdd:PHA03269   24 TNIPIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPT-PAASEKFDPAPAPHQAASRAPDPA--- 99
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 392891575  736 vfdddddeiesVSAVSSQ-RDPEPLEVPERQVENLPSPEDTPRPSDPLKPNGTNESKESTPVT 797
Cdd:PHA03269  100 -----------VAPQLAAaPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPF 151
 
Name Accession Description Interval E-value
C2-C2_1 pfam11618
First C2 domain of RPGR-interacting protein 1; This domain is the first, more N-terminal, C2 ...
361-459 4.50e-26

First C2 domain of RPGR-interacting protein 1; This domain is the first, more N-terminal, C2 domain on X-linked retinitis pigmentosa GTPase regulator-interacting proteins, or RPGR-interacting proteins.


Pssm-ID: 463310  Cd Length: 143  Bit Score: 104.64  E-value: 4.50e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392891575   361 QLETTPIMDAKQHNMDFTTVYDVLVSNLLIHYLQTNGIVIEMYRPASDCYKLLAAATISLIPLFEDSvLRKFCSEIMLKS 440
Cdd:pfam11618   45 ETQTTPVVRGLNPFYDFTSQYKVTVDDLFLQYLQTNSLTLELHQALGVDFKTLAAAQLRLHGLLEDR-GGRIHGTVTLTG 123
                           90       100
                   ....*....|....*....|
gi 392891575   441 V-DTGVEMCTLRYEIEVSQP 459
Cdd:pfam11618  124 VeGEIQIIGTLEYWIRLRVP 143
PHA03269 PHA03269
envelope glycoprotein C; Provisional
656-797 1.22e-03

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 42.79  E-value: 1.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392891575  656 TPVKEAELHDAEPTSMPPKAPEPTTAPLRRLSTDSSDTSFSHSSKDLFSPPTnPQTYDYEIPAVTPALVDSDGEEEAdri 735
Cdd:PHA03269   24 TNIPIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPT-PAASEKFDPAPAPHQAASRAPDPA--- 99
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 392891575  736 vfdddddeiesVSAVSSQ-RDPEPLEVPERQVENLPSPEDTPRPSDPLKPNGTNESKESTPVT 797
Cdd:PHA03269  100 -----------VAPQLAAaPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPF 151
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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