NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|375493553|ref|NP_001243626|]
View 

uncharacterized protein LOC570370 isoform 2 [Danio rerio]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ATP-synt_F6 super family cl05199
Mitochondrial ATP synthase coupling factor 6; Coupling factor 6 (F6) is a component of ...
 52-112 2.41e-33

Mitochondrial ATP synthase coupling factor 6; Coupling factor 6 (F6) is a component of mitochondrial ATP synthase which is required for the interactions of the catalytic and proton-translocating segments.


The actual alignment was detected with superfamily member pfam05511:

Pssm-ID: 461669  Cd Length: 96  Bit Score: 111.71  E-value: 2.41e-33
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 375493553   52 LDPIQKLFLDSIRAYSSQTGAAGGLVDAGPEYQKALAEEIAKLQRLYGGGDLSSFPEFKFP 112
Cdd:pfam05511  36 LDPVQKLFVDKIREYNTKSKSSGGLVDAGPEYQKELKEELTKLARQYGGGDMTKFPDFKFE 96
 
Name Accession Description Interval E-value
ATP-synt_F6 pfam05511
Mitochondrial ATP synthase coupling factor 6; Coupling factor 6 (F6) is a component of ...
 52-112 2.41e-33

Mitochondrial ATP synthase coupling factor 6; Coupling factor 6 (F6) is a component of mitochondrial ATP synthase which is required for the interactions of the catalytic and proton-translocating segments.


Pssm-ID: 461669  Cd Length: 96  Bit Score: 111.71  E-value: 2.41e-33
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 375493553   52 LDPIQKLFLDSIRAYSSQTGAAGGLVDAGPEYQKALAEEIAKLQRLYGGGDLSSFPEFKFP 112
Cdd:pfam05511  36 LDPVQKLFVDKIREYNTKSKSSGGLVDAGPEYQKELKEELTKLARQYGGGDMTKFPDFKFE 96
 
Name Accession Description Interval E-value
ATP-synt_F6 pfam05511
Mitochondrial ATP synthase coupling factor 6; Coupling factor 6 (F6) is a component of ...
 52-112 2.41e-33

Mitochondrial ATP synthase coupling factor 6; Coupling factor 6 (F6) is a component of mitochondrial ATP synthase which is required for the interactions of the catalytic and proton-translocating segments.


Pssm-ID: 461669  Cd Length: 96  Bit Score: 111.71  E-value: 2.41e-33
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 375493553   52 LDPIQKLFLDSIRAYSSQTGAAGGLVDAGPEYQKALAEEIAKLQRLYGGGDLSSFPEFKFP 112
Cdd:pfam05511  36 LDPVQKLFVDKIREYNTKSKSSGGLVDAGPEYQKELKEELTKLARQYGGGDMTKFPDFKFE 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH