NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|334187088|ref|NP_001190890|]
View 

Plant Tudor-like RNA-binding protein [Arabidopsis thaliana]

Protein Classification

Agenet domain-containing protein( domain architecture ID 10529033)

Agenet domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Agenet pfam05641
Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the ...
 6-64 2.26e-15

Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the agenet domain is unknown. This family now matches both the two Agenet domains in the FMR proteins.


:

Pssm-ID: 461700  Cd Length: 61  Bit Score: 69.26  E-value: 2.26e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334187088    6 GSRVEVFSNKEAPYGAWRCAEIVSG-NGHTYNVRFYSFQIEHE-EAVMEKVPRKIIRPCPP 64
Cdd:pfam05641   1 GDKVEVLSDEEGFRGAWFRAKVIKVlKGDKYLVEYDDLLDEDGgGPLEEWVPASDIRPCPP 61
Agenet smart00743
Tudor-like domain present in plant sequences; Domain in plant sequences with possible ...
 69-125 5.29e-13

Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions.


:

Pssm-ID: 214798  Cd Length: 59  Bit Score: 62.73  E-value: 5.29e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 334187088    69 ERWDTGELVEVLDNFSWKAATVREELSGHYYVVRLLG--TPEELTFHKVNLRARKSWQD 125
Cdd:smart00743   1 SDFKEGDRVEVFSEDSWWEAVVTKVLGDGKYLVEYKGesEPLELTVDWSDLRPHPPWVD 59
 
Name Accession Description Interval E-value
Agenet pfam05641
Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the ...
 6-64 2.26e-15

Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the agenet domain is unknown. This family now matches both the two Agenet domains in the FMR proteins.


Pssm-ID: 461700  Cd Length: 61  Bit Score: 69.26  E-value: 2.26e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334187088    6 GSRVEVFSNKEAPYGAWRCAEIVSG-NGHTYNVRFYSFQIEHE-EAVMEKVPRKIIRPCPP 64
Cdd:pfam05641   1 GDKVEVLSDEEGFRGAWFRAKVIKVlKGDKYLVEYDDLLDEDGgGPLEEWVPASDIRPCPP 61
Agenet smart00743
Tudor-like domain present in plant sequences; Domain in plant sequences with possible ...
 69-125 5.29e-13

Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions.


Pssm-ID: 214798  Cd Length: 59  Bit Score: 62.73  E-value: 5.29e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 334187088    69 ERWDTGELVEVLDNFSWKAATVREELSGHYYVVRLLG--TPEELTFHKVNLRARKSWQD 125
Cdd:smart00743   1 SDFKEGDRVEVFSEDSWWEAVVTKVLGDGKYLVEYKGesEPLELTVDWSDLRPHPPWVD 59
Tudor_Agenet_AtDUF_rpt2_4 cd20406
second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 ...
 74-118 1.29e-11

second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the second and fourth Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410477  Cd Length: 47  Bit Score: 58.37  E-value: 1.29e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 334187088  74 GELVEVLDNFSWKAATVREELSGHYYVVRLLGTPEELTFHKVNLR 118
Cdd:cd20406    2 GDKVDAFYNGGWWPGVVTKVLEDNRYLVYLDATKEELEFEHSDLR 46
Agenet smart00743
Tudor-like domain present in plant sequences; Domain in plant sequences with possible ...
 1-67 5.36e-10

Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions.


Pssm-ID: 214798  Cd Length: 59  Bit Score: 54.25  E-value: 5.36e-10
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 334187088     1 MRIRKGSRVEVFSNkeapyGAWRCAEIVSGNG-HTYNVRFYSfqieHEEAVMEKVPRKIIRPCPPLVD 67
Cdd:smart00743   1 SDFKEGDRVEVFSE-----DSWWEAVVTKVLGdGKYLVEYKG----ESEPLELTVDWSDLRPHPPWVD 59
Tudor_Agenet_AtDUF_rpt1_3 cd20405
first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 ...
 3-64 2.66e-06

first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the first and third Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410476  Cd Length: 65  Bit Score: 44.17  E-value: 2.66e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334187088   3 IRKGSRVEVFSNKEAPYGAWRCAEIVSGNGH--TYNVRFYSFQIEHE-EAVMEKVPRKIIRPCPP 64
Cdd:cd20405    1 FSKGTEVEVSSEEEGFRGSWYRAIVVKEPEGekKFLVKYDELLLDDGsEPLEETVDLRRVRPVPP 65
 
Name Accession Description Interval E-value
Agenet pfam05641
Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the ...
 6-64 2.26e-15

Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the agenet domain is unknown. This family now matches both the two Agenet domains in the FMR proteins.


Pssm-ID: 461700  Cd Length: 61  Bit Score: 69.26  E-value: 2.26e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334187088    6 GSRVEVFSNKEAPYGAWRCAEIVSG-NGHTYNVRFYSFQIEHE-EAVMEKVPRKIIRPCPP 64
Cdd:pfam05641   1 GDKVEVLSDEEGFRGAWFRAKVIKVlKGDKYLVEYDDLLDEDGgGPLEEWVPASDIRPCPP 61
Agenet smart00743
Tudor-like domain present in plant sequences; Domain in plant sequences with possible ...
 69-125 5.29e-13

Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions.


Pssm-ID: 214798  Cd Length: 59  Bit Score: 62.73  E-value: 5.29e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 334187088    69 ERWDTGELVEVLDNFSWKAATVREELSGHYYVVRLLG--TPEELTFHKVNLRARKSWQD 125
Cdd:smart00743   1 SDFKEGDRVEVFSEDSWWEAVVTKVLGDGKYLVEYKGesEPLELTVDWSDLRPHPPWVD 59
Tudor_Agenet_AtDUF_rpt2_4 cd20406
second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 ...
 74-118 1.29e-11

second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the second and fourth Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410477  Cd Length: 47  Bit Score: 58.37  E-value: 1.29e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 334187088  74 GELVEVLDNFSWKAATVREELSGHYYVVRLLGTPEELTFHKVNLR 118
Cdd:cd20406    2 GDKVDAFYNGGWWPGVVTKVLEDNRYLVYLDATKEELEFEHSDLR 46
Agenet smart00743
Tudor-like domain present in plant sequences; Domain in plant sequences with possible ...
 1-67 5.36e-10

Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions.


Pssm-ID: 214798  Cd Length: 59  Bit Score: 54.25  E-value: 5.36e-10
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 334187088     1 MRIRKGSRVEVFSNkeapyGAWRCAEIVSGNG-HTYNVRFYSfqieHEEAVMEKVPRKIIRPCPPLVD 67
Cdd:smart00743   1 SDFKEGDRVEVFSE-----DSWWEAVVTKVLGdGKYLVEYKG----ESEPLELTVDWSDLRPHPPWVD 59
Tudor_Agenet_AtDUF_rpt1_3 cd20405
first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 ...
 3-64 2.66e-06

first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the first and third Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410476  Cd Length: 65  Bit Score: 44.17  E-value: 2.66e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334187088   3 IRKGSRVEVFSNKEAPYGAWRCAEIVSGNGH--TYNVRFYSFQIEHE-EAVMEKVPRKIIRPCPP 64
Cdd:cd20405    1 FSKGTEVEVSSEEEGFRGSWYRAIVVKEPEGekKFLVKYDELLLDDGsEPLEETVDLRRVRPVPP 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH