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Conserved domains on  [gi|334188485|ref|NP_001190568|]
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Subtilase family protein [Arabidopsis thaliana]

Protein Classification

S8 family peptidase( domain architecture ID 15916511)

S8 family peptidase is a subtilisin-like serine protease containing an Asp/His/Ser catalytic triad that is not homologous to trypsin; similar to Arabidopsis thaliana subtilisin-like proteases

CATH:  3.40.50.200
EC:  3.4.-.-
Gene Ontology:  GO:0004252|GO:0006508
MEROPS:  S8
PubMed:  8439290|9070434
SCOP:  3000226

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Peptidases_S8_3 cd04852
Peptidase S8 family domain, uncharacterized subfamily 3; This family is a member of the ...
110-542 9.69e-118

Peptidase S8 family domain, uncharacterized subfamily 3; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


:

Pssm-ID: 173795 [Multi-domain]  Cd Length: 307  Bit Score: 355.75  E-value: 9.69e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 110 LKLQTSASWDFMGLKEGKGTKRNPS--VESDTIIGVFDGGIWPESESFSDKGFGPPPKKWKGICAGGKNFT---CNNKLI 184
Cdd:cd04852    1 YQLHTTRSPDFLGLPGAWGGSLLGAanAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNpfsCNNKLI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 185 GARHYSPGD--------------ARDSTGHGTHTASIAAGNAVANTSFFGIGNGTVRGAVPASRIAVYRVCAGE--CRDD 248
Cdd:cd04852   81 GARYFSDGYdayggfnsdgeyrsPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDggCFGS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 249 AILSAFDDAISDGVDIITISIGDiNVYPFEKDPIAIGAFHAMSKGILTVNAAGNTGPDTASITSLAPWLLTVAASTanre 328
Cdd:cd04852  161 DILAAIDQAIADGVDVISYSIGG-GSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST---- 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 329 fvskvvlgdgktlvgksvngfdlkgkkfplvygksaalslsqakcaedctpecldaslvkgkilvcnrflpyvaytkrav 408
Cdd:cd04852      --------------------------------------------------------------------------------
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 409 aaifedgsdwaqinglpvsglqkddfespeaavlksesifyqtapkilsfssrgpniivadiLKPDITAPGLEILAANSL 488
Cdd:cd04852  236 --------------------------------------------------------------LKPDIAAPGVDILAAWTP 253
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....
gi 334188485 489 RASPFYDTAYVKYSVESGTSMSCPHAAGVAAYVKTFHPQWSPSMIKSAIMTTAW 542
Cdd:cd04852  254 EGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307
fn3_6 pfam17766
Fibronectin type-III domain; This FN3 like domain is found at the C-terminus of cucumisin ...
614-715 1.33e-33

Fibronectin type-III domain; This FN3 like domain is found at the C-terminus of cucumisin proteins.


:

Pssm-ID: 465493  Cd Length: 98  Bit Score: 123.85  E-value: 1.33e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485  614 NLNYPSMSAklSGSNISFIVTFNRTVTNVGTPNSTYKSKVVLNHGskLNVKVSPSVLSMKSMNEKQSFTVTVSASELHSE 693
Cdd:pfam17766   1 DLNYPSIAV--SFENLNGSVTVTRTVTNVGDGPSTYTASVTAPPG--VSVTVSPSTLVFTKVGEKKSFTVTFTATKAPSG 76
                          90       100
                  ....*....|....*....|..
gi 334188485  694 LPSSANLIWSDGTHNVRSPIVV 715
Cdd:pfam17766  77 EYVFGSLTWSDGKHTVRSPIVV 98
Inhibitor_I9 pfam05922
Peptidase inhibitor I9; This family includes the proteinase B inhibitor from Saccharomyces ...
35-113 2.77e-20

Peptidase inhibitor I9; This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'.


:

Pssm-ID: 428674  Cd Length: 82  Bit Score: 85.42  E-value: 2.77e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485   35 VYIVYMGSL--PSRADYTPMSHHMNILQEVARE-SSIEGRLVRSYKRSFNGFVARLTESERERVADMEGVVSVFPNKKLK 111
Cdd:pfam05922   1 TYIVYLKEGaaAADSFSSHTEWHSSLLRSVLSEeSSAEAGILYSYKIGFNGFAAKLTEEEAEKLRKHPEVVSVEPDQVVK 80

                  ..
gi 334188485  112 LQ 113
Cdd:pfam05922  81 LH 82
PA_subtilisin_like cd02120
PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This ...
333-433 2.84e-13

PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.


:

Pssm-ID: 239035 [Multi-domain]  Cd Length: 126  Bit Score: 67.05  E-value: 2.84e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 333 VVLGDGKTLVGKSVNGFDLKgkKFPLVYgksaALSLSQAKCAEDCTPECLDASLVKGKILVCNRFLPYVAYTK------- 405
Cdd:cd02120    2 VTLGNGKTIVGQSLYPGNLK--TYPLVY----KSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKgdavkaa 75
                         90       100       110
                 ....*....|....*....|....*....|...
gi 334188485 406 RAVAAIF-----EDGSDWAQINGLPVSGLQKDD 433
Cdd:cd02120   76 GGAGMILandptDGLDVVADAHVLPAVHVDYED 108
 
Name Accession Description Interval E-value
Peptidases_S8_3 cd04852
Peptidase S8 family domain, uncharacterized subfamily 3; This family is a member of the ...
110-542 9.69e-118

Peptidase S8 family domain, uncharacterized subfamily 3; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173795 [Multi-domain]  Cd Length: 307  Bit Score: 355.75  E-value: 9.69e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 110 LKLQTSASWDFMGLKEGKGTKRNPS--VESDTIIGVFDGGIWPESESFSDKGFGPPPKKWKGICAGGKNFT---CNNKLI 184
Cdd:cd04852    1 YQLHTTRSPDFLGLPGAWGGSLLGAanAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNpfsCNNKLI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 185 GARHYSPGD--------------ARDSTGHGTHTASIAAGNAVANTSFFGIGNGTVRGAVPASRIAVYRVCAGE--CRDD 248
Cdd:cd04852   81 GARYFSDGYdayggfnsdgeyrsPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDggCFGS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 249 AILSAFDDAISDGVDIITISIGDiNVYPFEKDPIAIGAFHAMSKGILTVNAAGNTGPDTASITSLAPWLLTVAASTanre 328
Cdd:cd04852  161 DILAAIDQAIADGVDVISYSIGG-GSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST---- 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 329 fvskvvlgdgktlvgksvngfdlkgkkfplvygksaalslsqakcaedctpecldaslvkgkilvcnrflpyvaytkrav 408
Cdd:cd04852      --------------------------------------------------------------------------------
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 409 aaifedgsdwaqinglpvsglqkddfespeaavlksesifyqtapkilsfssrgpniivadiLKPDITAPGLEILAANSL 488
Cdd:cd04852  236 --------------------------------------------------------------LKPDIAAPGVDILAAWTP 253
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....
gi 334188485 489 RASPFYDTAYVKYSVESGTSMSCPHAAGVAAYVKTFHPQWSPSMIKSAIMTTAW 542
Cdd:cd04852  254 EGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307
fn3_6 pfam17766
Fibronectin type-III domain; This FN3 like domain is found at the C-terminus of cucumisin ...
614-715 1.33e-33

Fibronectin type-III domain; This FN3 like domain is found at the C-terminus of cucumisin proteins.


Pssm-ID: 465493  Cd Length: 98  Bit Score: 123.85  E-value: 1.33e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485  614 NLNYPSMSAklSGSNISFIVTFNRTVTNVGTPNSTYKSKVVLNHGskLNVKVSPSVLSMKSMNEKQSFTVTVSASELHSE 693
Cdd:pfam17766   1 DLNYPSIAV--SFENLNGSVTVTRTVTNVGDGPSTYTASVTAPPG--VSVTVSPSTLVFTKVGEKKSFTVTFTATKAPSG 76
                          90       100
                  ....*....|....*....|..
gi 334188485  694 LPSSANLIWSDGTHNVRSPIVV 715
Cdd:pfam17766  77 EYVFGSLTWSDGKHTVRSPIVV 98
AprE COG1404
Serine protease, subtilisin family [Posttranslational modification, protein turnover, ...
137-574 3.38e-28

Serine protease, subtilisin family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 441014 [Multi-domain]  Cd Length: 456  Bit Score: 118.66  E-value: 3.38e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 137 SDTIIGVFDGGIWPESESFSDKgfgpppkkwkgiCAGGKNFTcnnkligarhYSPGDARDSTGHGTHTASIAAGNavant 216
Cdd:COG1404  109 AGVTVAVIDTGVDADHPDLAGR------------VVGGYDFV----------DGDGDPSDDNGHGTHVAGIIAAN----- 161
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 217 sffGIGNGTVRGAVPASRIAVYRV--CAGECRDDAILSAFDDAISDGVDIITISIGdinVYPFEKDPIAIGAF-HAMSKG 293
Cdd:COG1404  162 ---GNNGGGVAGVAPGAKLLPVRVldDNGSGTTSDIAAAIDWAADNGADVINLSLG---GPADGYSDALAAAVdYAVDKG 235
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 294 ILTVNAAGNTGPDTASITSLA--PWLLTVAASTANRefvskvvlgdgktlvgksvngfdlkgkkfplvygksaalslsqa 371
Cdd:COG1404  236 VLVVAAAGNSGSDDATVSYPAayPNVIAVGAVDANG-------------------------------------------- 271
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 372 kcaedctpecldaslvkgkilvcnrflpyvaytkravaaifedgsdwaqinglpvsglqkddfespeaavlksesifyqt 451
Cdd:COG1404      --------------------------------------------------------------------------------
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 452 apKILSFSSRGPniivadilKPDITAPGLEILAANSlraspfyDTAYVKYsveSGTSMSCPHAAGVAAYVKTFHPQWSPS 531
Cdd:COG1404  272 --QLASFSNYGP--------KVDVAAPGVDILSTYP-------GGGYATL---SGTSMAAPHVAGAAALLLSANPDLTPA 331
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|...
gi 334188485 532 MIKSAIMTTAWSMNASQSgyastefAYGAGHVDPIAATNPGLV 574
Cdd:COG1404  332 QVRAILLNTATPLGAPGP-------YYGYGLLADGAAGATSAG 367
Peptidase_S8 pfam00082
Subtilase family; Subtilases are a family of serine proteases. They appear to have ...
137-561 1.29e-23

Subtilase family; Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567.


Pssm-ID: 395035 [Multi-domain]  Cd Length: 287  Bit Score: 101.38  E-value: 1.29e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485  137 SDTIIGVFDGGIWPESESFSDKGFGPPPKKWKGICAGGKNFTCNNKligarhyspgDARDSTGHGTHTASIAAGNAVANT 216
Cdd:pfam00082   2 KGVVVAVLDTGIDPNHPDLSGNLDNDPSDDPEASVDFNNEWDDPRD----------DIDDKNGHGTHVAGIIAAGGNNSI 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485  217 SFFGIgngtvrgaVPASRIAVYRVCA-GECRDDAILSAFDDAISDGVDIITISIG--DINVYPFEKDPIAIGAFHAMSKG 293
Cdd:pfam00082  72 GVSGV--------APGAKILGVRVFGdGGGTDAITAQAISWAIPQGADVINMSWGsdKTDGGPGSWSAAVDQLGGAEAAG 143
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485  294 ILTVNAAGNTGPD-----TASITSLAPWLLTVAASTAnrefvskvvlgdgktlvgksvngfdlkgkkfplvygksaalsl 368
Cdd:pfam00082 144 SLFVWAAGNGSPGgnngsSVGYPAQYKNVIAVGAVDE------------------------------------------- 180
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485  369 sqakcaedctpecldaslvkgkilvcnrflpyvaytkravaaifedgsdwaqinglpvsglqkddfespeaavlksesif 448
Cdd:pfam00082     --------------------------------------------------------------------------------
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485  449 yQTAPKILSFSSRGPNiiVADILKPDITAPGLEILAANSLRA--SPFYDTAYVKYSVESGTSMSCPHAAGVAAYVKTFHP 526
Cdd:pfam00082 181 -ASEGNLASFSSYGPT--LDGRLKPDIVAPGGNITGGNISSTllTTTSDPPNQGYDSMSGTSMATPHVAGAAALLKQAYP 257
                         410       420       430
                  ....*....|....*....|....*....|....*
gi 334188485  527 QWSPSMIKSAIMTTawsmnASQSGYASTEFAYGAG 561
Cdd:pfam00082 258 NLTPETLKALLVNT-----ATDLGDAGLDRLFGYG 287
Inhibitor_I9 pfam05922
Peptidase inhibitor I9; This family includes the proteinase B inhibitor from Saccharomyces ...
35-113 2.77e-20

Peptidase inhibitor I9; This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'.


Pssm-ID: 428674  Cd Length: 82  Bit Score: 85.42  E-value: 2.77e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485   35 VYIVYMGSL--PSRADYTPMSHHMNILQEVARE-SSIEGRLVRSYKRSFNGFVARLTESERERVADMEGVVSVFPNKKLK 111
Cdd:pfam05922   1 TYIVYLKEGaaAADSFSSHTEWHSSLLRSVLSEeSSAEAGILYSYKIGFNGFAAKLTEEEAEKLRKHPEVVSVEPDQVVK 80

                  ..
gi 334188485  112 LQ 113
Cdd:pfam05922  81 LH 82
PA_subtilisin_like cd02120
PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This ...
333-433 2.84e-13

PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.


Pssm-ID: 239035 [Multi-domain]  Cd Length: 126  Bit Score: 67.05  E-value: 2.84e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 333 VVLGDGKTLVGKSVNGFDLKgkKFPLVYgksaALSLSQAKCAEDCTPECLDASLVKGKILVCNRFLPYVAYTK------- 405
Cdd:cd02120    2 VTLGNGKTIVGQSLYPGNLK--TYPLVY----KSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKgdavkaa 75
                         90       100       110
                 ....*....|....*....|....*....|...
gi 334188485 406 RAVAAIF-----EDGSDWAQINGLPVSGLQKDD 433
Cdd:cd02120   76 GGAGMILandptDGLDVVADAHVLPAVHVDYED 108
germ_prot_CspBA NF040809
bifunctional germination protease/germinant receptor pseudoprotease CspBA; CspBA, as found in ...
459-519 6.19e-06

bifunctional germination protease/germinant receptor pseudoprotease CspBA; CspBA, as found in Clostridium difficile, is translated as a fusion protein, but cleaved into separate homologous CspB and CspA proteins during spore formation. CspB is a protease, required to active SleC by cleaving it in order to trigger germination. CspA, like the bile salt germinant receptor CspC (encoded by the adjacent gene), has lost the catalytic residues necessary for subtilisin-like serine protease activity.


Pssm-ID: 468750 [Multi-domain]  Cd Length: 1099  Bit Score: 49.78  E-value: 6.19e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334188485  459 SSRGPNIivADILKPDITAPGLEILAAnslraspfYDTAyvKYSVESGTSMSCPHAAGVAA 519
Cdd:NF040809  994 SSRGPTI--RNIQKPDIVAPGVNIIAP--------YPGN--TYATITGTSAAAAHVSGVAA 1042
 
Name Accession Description Interval E-value
Peptidases_S8_3 cd04852
Peptidase S8 family domain, uncharacterized subfamily 3; This family is a member of the ...
110-542 9.69e-118

Peptidase S8 family domain, uncharacterized subfamily 3; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173795 [Multi-domain]  Cd Length: 307  Bit Score: 355.75  E-value: 9.69e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 110 LKLQTSASWDFMGLKEGKGTKRNPS--VESDTIIGVFDGGIWPESESFSDKGFGPPPKKWKGICAGGKNFT---CNNKLI 184
Cdd:cd04852    1 YQLHTTRSPDFLGLPGAWGGSLLGAanAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNpfsCNNKLI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 185 GARHYSPGD--------------ARDSTGHGTHTASIAAGNAVANTSFFGIGNGTVRGAVPASRIAVYRVCAGE--CRDD 248
Cdd:cd04852   81 GARYFSDGYdayggfnsdgeyrsPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDggCFGS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 249 AILSAFDDAISDGVDIITISIGDiNVYPFEKDPIAIGAFHAMSKGILTVNAAGNTGPDTASITSLAPWLLTVAASTanre 328
Cdd:cd04852  161 DILAAIDQAIADGVDVISYSIGG-GSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST---- 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 329 fvskvvlgdgktlvgksvngfdlkgkkfplvygksaalslsqakcaedctpecldaslvkgkilvcnrflpyvaytkrav 408
Cdd:cd04852      --------------------------------------------------------------------------------
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 409 aaifedgsdwaqinglpvsglqkddfespeaavlksesifyqtapkilsfssrgpniivadiLKPDITAPGLEILAANSL 488
Cdd:cd04852  236 --------------------------------------------------------------LKPDIAAPGVDILAAWTP 253
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....
gi 334188485 489 RASPFYDTAYVKYSVESGTSMSCPHAAGVAAYVKTFHPQWSPSMIKSAIMTTAW 542
Cdd:cd04852  254 EGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307
Peptidases_S8_subtilisin_Vpr-like cd07474
Peptidase S8 family domain in Vpr-like proteins; The maturation of the peptide antibiotic ...
140-568 2.21e-39

Peptidase S8 family domain in Vpr-like proteins; The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173800 [Multi-domain]  Cd Length: 295  Bit Score: 147.09  E-value: 2.21e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 140 IIGVFDGGIWPESESFSDKGFgpPPKKWKGicagGKNFTCNNKLIGARHYSP-----GDARDSTGHGTHTASIAAGNava 214
Cdd:cd07474    5 KVAVIDTGIDYTHPDLGGPGF--PNDKVKG----GYDFVDDDYDPMDTRPYPsplgdASAGDATGHGTHVAGIIAGN--- 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 215 ntsffGIGNGTVRGAVPASRIAVYRVC--AGECRDDAILSAFDDAISDGVDIITISIGDInvYPFEKDPIAIGAFHAMSK 292
Cdd:cd07474   76 -----GVNVGTIKGVAPKADLYAYKVLgpGGSGTTDVIIAAIEQAVDDGMDVINLSLGSS--VNGPDDPDAIAINNAVKA 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 293 GILTVNAAGNTGPDTASI--TSLAPWLLTVAASTANREFVskvvlgdgktlvgksvngfdlkgkkfplvygksaalslsq 370
Cdd:cd07474  149 GVVVVAAAGNSGPAPYTIgsPATAPSAITVGASTVADVAE---------------------------------------- 188
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 371 akcaedctpecldaslvkgkilvcnrflpyvaytkravaaifedgsdwaqinglpvsglqkddfespeaavlksesifyq 450
Cdd:cd07474      --------------------------------------------------------------------------------
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 451 tAPKILSFSSRGPnIIVADILKPDITAPGLEILAanslrASPFYDTAYVKysvESGTSMSCPHAAGVAAYVKTFHPQWSP 530
Cdd:cd07474  189 -ADTVGPSSSRGP-PTSDSAIKPDIVAPGVDIMS-----TAPGSGTGYAR---MSGTSMAAPHVAGAAALLKQAHPDWSP 258
                        410       420       430
                 ....*....|....*....|....*....|....*...
gi 334188485 531 SMIKSAIMTTAwSMNASQSGYASTEFAYGAGHVDPIAA 568
Cdd:cd07474  259 AQIKAALMNTA-KPLYDSDGVVYPVSRQGAGRVDALRA 295
fn3_6 pfam17766
Fibronectin type-III domain; This FN3 like domain is found at the C-terminus of cucumisin ...
614-715 1.33e-33

Fibronectin type-III domain; This FN3 like domain is found at the C-terminus of cucumisin proteins.


Pssm-ID: 465493  Cd Length: 98  Bit Score: 123.85  E-value: 1.33e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485  614 NLNYPSMSAklSGSNISFIVTFNRTVTNVGTPNSTYKSKVVLNHGskLNVKVSPSVLSMKSMNEKQSFTVTVSASELHSE 693
Cdd:pfam17766   1 DLNYPSIAV--SFENLNGSVTVTRTVTNVGDGPSTYTASVTAPPG--VSVTVSPSTLVFTKVGEKKSFTVTFTATKAPSG 76
                          90       100
                  ....*....|....*....|..
gi 334188485  694 LPSSANLIWSDGTHNVRSPIVV 715
Cdd:pfam17766  77 EYVFGSLTWSDGKHTVRSPIVV 98
AprE COG1404
Serine protease, subtilisin family [Posttranslational modification, protein turnover, ...
137-574 3.38e-28

Serine protease, subtilisin family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 441014 [Multi-domain]  Cd Length: 456  Bit Score: 118.66  E-value: 3.38e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 137 SDTIIGVFDGGIWPESESFSDKgfgpppkkwkgiCAGGKNFTcnnkligarhYSPGDARDSTGHGTHTASIAAGNavant 216
Cdd:COG1404  109 AGVTVAVIDTGVDADHPDLAGR------------VVGGYDFV----------DGDGDPSDDNGHGTHVAGIIAAN----- 161
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 217 sffGIGNGTVRGAVPASRIAVYRV--CAGECRDDAILSAFDDAISDGVDIITISIGdinVYPFEKDPIAIGAF-HAMSKG 293
Cdd:COG1404  162 ---GNNGGGVAGVAPGAKLLPVRVldDNGSGTTSDIAAAIDWAADNGADVINLSLG---GPADGYSDALAAAVdYAVDKG 235
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 294 ILTVNAAGNTGPDTASITSLA--PWLLTVAASTANRefvskvvlgdgktlvgksvngfdlkgkkfplvygksaalslsqa 371
Cdd:COG1404  236 VLVVAAAGNSGSDDATVSYPAayPNVIAVGAVDANG-------------------------------------------- 271
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 372 kcaedctpecldaslvkgkilvcnrflpyvaytkravaaifedgsdwaqinglpvsglqkddfespeaavlksesifyqt 451
Cdd:COG1404      --------------------------------------------------------------------------------
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 452 apKILSFSSRGPniivadilKPDITAPGLEILAANSlraspfyDTAYVKYsveSGTSMSCPHAAGVAAYVKTFHPQWSPS 531
Cdd:COG1404  272 --QLASFSNYGP--------KVDVAAPGVDILSTYP-------GGGYATL---SGTSMAAPHVAGAAALLLSANPDLTPA 331
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|...
gi 334188485 532 MIKSAIMTTAWSMNASQSgyastefAYGAGHVDPIAATNPGLV 574
Cdd:COG1404  332 QVRAILLNTATPLGAPGP-------YYGYGLLADGAAGATSAG 367
Peptidase_S8 pfam00082
Subtilase family; Subtilases are a family of serine proteases. They appear to have ...
137-561 1.29e-23

Subtilase family; Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567.


Pssm-ID: 395035 [Multi-domain]  Cd Length: 287  Bit Score: 101.38  E-value: 1.29e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485  137 SDTIIGVFDGGIWPESESFSDKGFGPPPKKWKGICAGGKNFTCNNKligarhyspgDARDSTGHGTHTASIAAGNAVANT 216
Cdd:pfam00082   2 KGVVVAVLDTGIDPNHPDLSGNLDNDPSDDPEASVDFNNEWDDPRD----------DIDDKNGHGTHVAGIIAAGGNNSI 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485  217 SFFGIgngtvrgaVPASRIAVYRVCA-GECRDDAILSAFDDAISDGVDIITISIG--DINVYPFEKDPIAIGAFHAMSKG 293
Cdd:pfam00082  72 GVSGV--------APGAKILGVRVFGdGGGTDAITAQAISWAIPQGADVINMSWGsdKTDGGPGSWSAAVDQLGGAEAAG 143
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485  294 ILTVNAAGNTGPD-----TASITSLAPWLLTVAASTAnrefvskvvlgdgktlvgksvngfdlkgkkfplvygksaalsl 368
Cdd:pfam00082 144 SLFVWAAGNGSPGgnngsSVGYPAQYKNVIAVGAVDE------------------------------------------- 180
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485  369 sqakcaedctpecldaslvkgkilvcnrflpyvaytkravaaifedgsdwaqinglpvsglqkddfespeaavlksesif 448
Cdd:pfam00082     --------------------------------------------------------------------------------
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485  449 yQTAPKILSFSSRGPNiiVADILKPDITAPGLEILAANSLRA--SPFYDTAYVKYSVESGTSMSCPHAAGVAAYVKTFHP 526
Cdd:pfam00082 181 -ASEGNLASFSSYGPT--LDGRLKPDIVAPGGNITGGNISSTllTTTSDPPNQGYDSMSGTSMATPHVAGAAALLKQAYP 257
                         410       420       430
                  ....*....|....*....|....*....|....*
gi 334188485  527 QWSPSMIKSAIMTTawsmnASQSGYASTEFAYGAG 561
Cdd:pfam00082 258 NLTPETLKALLVNT-----ATDLGDAGLDRLFGYG 287
Peptidases_S8_1 cd07487
Peptidase S8 family domain, uncharacterized subfamily 1; This family is a member of the ...
141-541 2.56e-22

Peptidase S8 family domain, uncharacterized subfamily 1; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173812 [Multi-domain]  Cd Length: 264  Bit Score: 97.27  E-value: 2.56e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 141 IGVFDGGIWPESESFSDKGfgpppkkwkgicaggknftCNNKLIGARHYSPGDARDSTGHGTHTASIAAGNAVAntsffg 220
Cdd:cd07487    6 VAVLDTGIDAPHPDFDGRI-------------------IRFADFVNTVNGRTTPYDDNGHGTHVAGIIAGSGRA------ 60
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 221 iGNGTVRGAVPASRIAVYRVCA--GECRDDAILSAFDDAISD----GVDIITISIGdinvYPFEK----DPIAIGAFHAM 290
Cdd:cd07487   61 -SNGKYKGVAPGANLVGVKVLDdsGSGSESDIIAGIDWVVENnekyNIRVVNLSLG----APPDPsygeDPLCQAVERLW 135
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 291 SKGILTVNAAGNTGPDTASITS--LAPWLLTVAASTANRefvskvvlgdgktlvgksvngfdlkgkkfPLVYGKSaalsl 368
Cdd:cd07487  136 DAGIVVVVAAGNSGPGPGTITSpgNSPKVITVGAVDDNG-----------------------------PHDDGIS----- 181
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 369 sqakcaedctpecldaslvkgkilvcnrflpyvaytkravaaifedgsdwaqinglpvsglqkddfespeaavlksesif 448
Cdd:cd07487      --------------------------------------------------------------------------------
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 449 yqtapkilSFSSRGPNiivAD-ILKPDITAPGLEILAANSLRASPFYDTAYvKYSVESGTSMSCPHAAGVAAYVKTFHPQ 527
Cdd:cd07487  182 --------YFSSRGPT---GDgRIKPDVVAPGENIVSCRSPGGNPGAGVGS-GYFEMSGTSMATPHVSGAIALLLQANPI 249
                        410
                 ....*....|....
gi 334188485 528 WSPSMIKSAIMTTA 541
Cdd:cd07487  250 LTPDEVKCILRDTA 263
Peptidases_S8_5 cd07489
Peptidase S8 family domain, uncharacterized subfamily 5; gap in seq This family is a member of ...
121-568 4.03e-22

Peptidase S8 family domain, uncharacterized subfamily 5; gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173814 [Multi-domain]  Cd Length: 312  Bit Score: 97.67  E-value: 4.03e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 121 MGLKeGKGTKrnpsvesdtiIGVFDGGIWPESESFSDkGFGPPPKkwkgiCAGGKNFTCNNKLIGARHYSPGDARDSTGH 200
Cdd:cd07489    8 EGIT-GKGVK----------VAVVDTGIDYTHPALGG-CFGPGCK-----VAGGYDFVGDDYDGTNPPVPDDDPMDCQGH 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 201 GTHTASIAAgnavANTSFFGIgngtvRGAVPASRIAVYRV--CAGECRDDAILSAFDDAISDGVDIITISIGDINvyPFE 278
Cdd:cd07489   71 GTHVAGIIA----ANPNAYGF-----TGVAPEATLGAYRVfgCSGSTTEDTIIAAFLRAYEDGADVITASLGGPS--GWS 139
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 279 KDPIAIGAFHAMSKGILTVNAAGNTGpdtasitSLAPWLLTVAASTANrefvskvVLgdgktlvgksvngfdlkgkkfpl 358
Cdd:cd07489  140 EDPWAVVASRIVDAGVVVTIAAGNDG-------ERGPFYASSPASGRG-------VI----------------------- 182
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 359 vygksaalslsqakcaedctpecldaslvkgkilvcnrflpyvaytkrAVAAIfedgsdwaqinglpvsglqkddfESpe 438
Cdd:cd07489  183 ------------------------------------------------AVASV-----------------------DS-- 189
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 439 aavlksesifyqtapkilSFSSRGPNiivAD-ILKPDITAPGLEILAAnslraspfYDTAYVKYSVESGTSMSCPHAAGV 517
Cdd:cd07489  190 ------------------YFSSWGPT---NElYLKPDVAAPGGNILST--------YPLAGGGYAVLSGTSMATPYVAGA 240
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 334188485 518 AA-YVKTFHPQWSPSMIKSAIMTTA----WSMNASQSGYASTEFAYGAGHVDPIAA 568
Cdd:cd07489  241 AAlLIQARHGKLSPAELRDLLASTAkplpWSDGTSALPDLAPVAQQGAGLVNAYKA 296
Peptidases_S8_S53 cd00306
Peptidase domain in the S8 and S53 families; Members of the peptidases S8 (subtilisin and ...
139-540 4.43e-21

Peptidase domain in the S8 and S53 families; Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values.


Pssm-ID: 173787 [Multi-domain]  Cd Length: 241  Bit Score: 93.03  E-value: 4.43e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 139 TIIGVFDGGIWPESESFSDkgfgpppkkWKGICAGGKNFTCNNKligarhySPGDARDSTGHGTHTASIAAGNAvantsf 218
Cdd:cd00306    1 VTVAVIDTGVDPDHPDLDG---------LFGGGDGGNDDDDNEN-------GPTDPDDGNGHGTHVAGIIAASA------ 58
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 219 fgiGNGTVRGAVPASRIAVYRVCA--GECRDDAILSAFDDAISD-GVDIITISIGDINVYPFEKDPIAIGAFHAMsKGIL 295
Cdd:cd00306   59 ---NNGGGVGVAPGAKLIPVKVLDgdGSGSSSDIAAAIDYAAADqGADVINLSLGGPGSPPSSALSEAIDYALAK-LGVL 134
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 296 TVNAAGNTGPDTASITS---LAPWLLTVAASTANREFvskvvlgdgktlvgksvngfdlkgkkfplvygksaalslsqak 372
Cdd:cd00306  135 VVAAAGNDGPDGGTNIGypaASPNVIAVGAVDRDGTP------------------------------------------- 171
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 373 caedctpecldaslvkgkilvcnrflpyvaytkravaaifedgsdwaqinglpvsglqkddfespeaavlksesifyqta 452
Cdd:cd00306      --------------------------------------------------------------------------------
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 453 pkILSFSSRGPniivadilKPDITAPGLEILAanslraspFYDTAYVKYSVESGTSMSCPHAAGVAAYVKTFHPQWSPSM 532
Cdd:cd00306  172 --ASPSSNGGA--------GVDIAAPGGDILS--------SPTTGGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQ 233

                 ....*...
gi 334188485 533 IKSAIMTT 540
Cdd:cd00306  234 VKAALLST 241
Inhibitor_I9 pfam05922
Peptidase inhibitor I9; This family includes the proteinase B inhibitor from Saccharomyces ...
35-113 2.77e-20

Peptidase inhibitor I9; This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'.


Pssm-ID: 428674  Cd Length: 82  Bit Score: 85.42  E-value: 2.77e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485   35 VYIVYMGSL--PSRADYTPMSHHMNILQEVARE-SSIEGRLVRSYKRSFNGFVARLTESERERVADMEGVVSVFPNKKLK 111
Cdd:pfam05922   1 TYIVYLKEGaaAADSFSSHTEWHSSLLRSVLSEeSSAEAGILYSYKIGFNGFAAKLTEEEAEKLRKHPEVVSVEPDQVVK 80

                  ..
gi 334188485  112 LQ 113
Cdd:pfam05922  81 LH 82
Peptidases_S8_C5a_Peptidase cd07475
Peptidase S8 family domain in Streptococcal C5a peptidases; Streptococcal C5a peptidase (SCP), ...
176-541 4.30e-20

Peptidase S8 family domain in Streptococcal C5a peptidases; Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173801 [Multi-domain]  Cd Length: 346  Bit Score: 92.33  E-value: 4.30e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 176 NFTCNNKLIGarhyspgDARDSTGHGTHTASIAAGNAVANTSFFGIgngtvRGAVPASRIAVYRV----CAGECRDDAIL 251
Cdd:cd07475   67 NYADNNDDIL-------DEDDGSSHGMHVAGIVAGNGDEEDNGEGI-----KGVAPEAQLLAMKVfsnpEGGSTYDDAYA 134
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 252 SAFDDAISDGVDIITISIGDINVYPFEKDPIAIGAFHAMSKGILTVNAAGNTGpdtasitslapwlltVAAStanrefvs 331
Cdd:cd07475  135 KAIEDAVKLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDG---------------NSGS-------- 191
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 332 kvvlgdgktlvgksvngfdlkGKKFPLVYGKSaalslsqakcaedctpeclDASLVKGkilvcnrflPYVAYTKRAVAAI 411
Cdd:cd07475  192 ---------------------GTSKPLATNNP-------------------DTGTVGS---------PATADDVLTVASA 222
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 412 fedgsdwaqinglpvsglqkddfespeaavlkSESIFYQTAPKILSFSSRGPniiVADI-LKPDITAPGLEILaanslra 490
Cdd:cd07475  223 --------------------------------NKKVPNPNGGQMSGFSSWGP---TPDLdLKPDITAPGGNIY------- 260
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 334188485 491 SPFYDTayvKYSVESGTSMSCPHAAGVAA----YVKTFHPQWSP----SMIKSAIMTTA 541
Cdd:cd07475  261 STVNDN---TYGYMSGTSMASPHVAGASAlvkqRLKEKYPKLSGeelvDLVKNLLMNTA 316
Peptidases_S8_6 cd07490
Peptidase S8 family domain, uncharacterized subfamily 6; This family is a member of the ...
168-542 2.97e-18

Peptidase S8 family domain, uncharacterized subfamily 6; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173815 [Multi-domain]  Cd Length: 254  Bit Score: 84.91  E-value: 2.97e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 168 KGICAGGKNFTCNnkligaRHYSPGDARDSTGHGTHTASIAAGNAVantsffgigNGTVRGAVPASRIAVYRVC-AGECR 246
Cdd:cd07490   19 AGRVAQWADFDEN------RRISATEVFDAGGHGTHVSGTIGGGGA---------KGVYIGVAPEADLLHGKVLdDGGGS 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 247 DDAILSAFDDAISDGVDIITISIGdinVYPFEKDPIAiGAFHAMSK--GILTVNAAGNTGPDTASItslapwlltvaast 324
Cdd:cd07490   84 LSQIIAGMEWAVEKDADVVSMSLG---GTYYSEDPLE-EAVEALSNqtGALFVVSAGNEGHGTSGS-------------- 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 325 anrefvskvvlgdgktlvgksvngfdlkgkkfplvygksaalslsqakcaedctPECLDASLvkgkilvcnrflpyvayt 404
Cdd:cd07490  146 ------------------------------------------------------PGSAYAAL------------------ 153
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 405 krAVAAIFEDGSDwaqinglpvsglqkDDFESPEAAvlksesifyqtapkILSFSSRGPNIiVADILKPDITAPGLEIla 484
Cdd:cd07490  154 --SVGAVDRDDED--------------AWFSSFGSS--------------GASLVSAPDSP-PDEYTKPDVAAPGVDV-- 200
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 334188485 485 aNSLRASPFYDTAYVKYSvesGTSMSCPHAAGVAAYVKTFHPQWSPSMIKSAIMTTAW 542
Cdd:cd07490  201 -YSARQGANGDGQYTRLS---GTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254
Peptidases_S8_Subtilisin_subset cd07477
Peptidase S8 family domain in Subtilisin proteins; This group is composed of many different ...
172-540 1.80e-15

Peptidase S8 family domain in Subtilisin proteins; This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173803 [Multi-domain]  Cd Length: 229  Bit Score: 76.42  E-value: 1.80e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 172 AGGKNFTcnnkligarHYSPGDARDSTGHGTHTASIAAgnAVANtsffgiGNGTVRGAvPASRIAVYRVC--AGECRDDA 249
Cdd:cd07477   23 VGGANFT---------GDDNNDYQDGNGHGTHVAGIIA--ALDN------GVGVVGVA-PEADLYAVKVLndDGSGTYSD 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 250 ILSAFDDAISDGVDIITISIGDINVYPFEKDpiAIGAFHAmsKGILTVNAAGNTGPDTASITSLApwlltvaastanref 329
Cdd:cd07477   85 IIAGIEWAIENGMDIINMSLGGPSDSPALRE--AIKKAYA--AGILVVAAAGNSGNGDSSYDYPA--------------- 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 330 vskvvlgdgktlvgksvngfdlkgkKFPLVYgksaalslsqakcaedctpecldaslvkgkilvcnrflpyvaytkrAVA 409
Cdd:cd07477  146 -------------------------KYPSVI----------------------------------------------AVG 154
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 410 AIFEDGsdwaqinglpvsglqkddfespeaavlksesifyqtapKILSFSSRGPNIivadilkpDITAPGLEILaanslr 489
Cdd:cd07477  155 AVDSNN--------------------------------------NRASFSSTGPEV--------ELAAPGVDIL------ 182
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|.
gi 334188485 490 aSPFYDTAYVKYSvesGTSMSCPHAAGVAAYVKTFHPQWSPSMIKSAIMTT 540
Cdd:cd07477  183 -STYPNNDYAYLS---GTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229
PA_subtilisin_like cd02120
PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This ...
333-433 2.84e-13

PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.


Pssm-ID: 239035 [Multi-domain]  Cd Length: 126  Bit Score: 67.05  E-value: 2.84e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 333 VVLGDGKTLVGKSVNGFDLKgkKFPLVYgksaALSLSQAKCAEDCTPECLDASLVKGKILVCNRFLPYVAYTK------- 405
Cdd:cd02120    2 VTLGNGKTIVGQSLYPGNLK--TYPLVY----KSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKgdavkaa 75
                         90       100       110
                 ....*....|....*....|....*....|...
gi 334188485 406 RAVAAIF-----EDGSDWAQINGLPVSGLQKDD 433
Cdd:cd02120   76 GGAGMILandptDGLDVVADAHVLPAVHVDYED 108
Peptidases_S8_Kp43_protease cd04842
Peptidase S8 family domain in Kp43 proteases; Kp43 proteases are members of the peptidase S8 ...
435-541 4.88e-13

Peptidase S8 family domain in Kp43 proteases; Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases


Pssm-ID: 173791 [Multi-domain]  Cd Length: 293  Bit Score: 70.44  E-value: 4.88e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 435 ESPEAAVLKSESIFYQTAPKILSFSSRGPNiivAD-ILKPDITAPGLEILAANSlRASPFYDTAYVKYSVESGTSMSCPH 513
Cdd:cd04842  181 NNPSVSNGEGGLGQSDNSDTVASFSSRGPT---YDgRIKPDLVAPGTGILSARS-GGGGIGDTSDSAYTSKSGTSMATPL 256
                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 334188485 514 AAGVAA----------YVKTFHPqwSPSMIKSAIMTTA 541
Cdd:cd04842  257 VAGAAAllrqyfvdgyYPTKFNP--SAALLKALLINSA 292
Peptidases_S8_Subtilisin_like cd07473
Peptidase S8 family domain in Subtilisin-like proteins; This family is a member of the ...
174-541 3.18e-12

Peptidase S8 family domain in Subtilisin-like proteins; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173799 [Multi-domain]  Cd Length: 259  Bit Score: 67.22  E-value: 3.18e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 174 GKNFTCNNkligarhyspGDARDSTGHGTHTASIAAgnAVANTsffGIGngtVRGAVPASRIAVYRVCAGECRD---DAI 250
Cdd:cd07473   49 GWNFVNND----------NDPMDDNGHGTHVAGIIG--AVGNN---GIG---IAGVAWNVKIMPLKFLGADGSGttsDAI 110
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 251 LsAFDDAISDGVDIITISIGDINVYPFEKDPIAigafHAMSKGILTVNAAGNTGPDT-------ASITSlaPWLLTVAAS 323
Cdd:cd07473  111 K-AIDYAVDMGAKIINNSWGGGGPSQALRDAIA----RAIDAGILFVAAAGNDGTNNdktptypASYDL--DNIISVAAT 183
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 324 TANrefvskvvlgdgktlvgksvngfdlkgkkfplvygksaalslsqakcaedctpecldaslvkgkilvcnrflpyvay 403
Cdd:cd07473  184 DSN----------------------------------------------------------------------------- 186
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 404 tkravaaifedgsdwaqinglpvsglqkddfespeaavlksesifyqtaPKILSFSSRGPNIIvadilkpDITAPGLEIL 483
Cdd:cd07473  187 -------------------------------------------------DALASFSNYGKKTV-------DLAAPGVDIL 210
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 334188485 484 AANSLRAspfydtayvkYSVESGTSMSCPHAAGVAAYVKTFHPQWSPSMIKSAIMTTA 541
Cdd:cd07473  211 STSPGGG----------YGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSA 258
Peptidases_S8_CspA-like cd07478
Peptidase S8 family domain in CspA-like proteins; GSP (germination-specific protease) converts ...
455-541 6.88e-11

Peptidase S8 family domain in CspA-like proteins; GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173804 [Multi-domain]  Cd Length: 455  Bit Score: 64.95  E-value: 6.88e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 455 ILSFSSRGPNIivADILKPDITAPGLEILAANslrASPFYDTAyvkysveSGTSMSCPHAAGVAA------YVKTFHPQW 528
Cdd:cd07478  359 IAIFSGRGPTR--DGRIKPDIAAPGVNILTAS---PGGGYTTR-------SGTSVAAAIVAGACAlllqwgIVRGNDPYL 426
                         90
                 ....*....|...
gi 334188485 529 SPSMIKSAIMTTA 541
Cdd:cd07478  427 YGEKIKTYLIRGA 439
Peptidases_S8_PCSK9_ProteinaseK_like cd04077
Peptidase S8 family domain in ProteinaseK-like proteins; The peptidase S8 or Subtilase clan of ...
457-541 9.12e-11

Peptidase S8 family domain in ProteinaseK-like proteins; The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K.


Pssm-ID: 173790 [Multi-domain]  Cd Length: 255  Bit Score: 62.92  E-value: 9.12e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 457 SFSSRGPNIivadilkpDITAPGLEILAAnslraSPFYDTAYvkySVESGTSMSCPHAAGVAAYVKTFHPQWSPSMIKSA 536
Cdd:cd04077  185 SFSNYGSCV--------DIFAPGVDILSA-----WIGSDTAT---ATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKAR 248

                 ....*
gi 334188485 537 IMTTA 541
Cdd:cd04077  249 LLNLA 253
Peptidases_S8_Autotransporter_serine_protease_like cd04848
Peptidase S8 family domain in Autotransporter serine proteases; Autotransporter serine ...
141-314 3.79e-10

Peptidase S8 family domain in Autotransporter serine proteases; Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.


Pssm-ID: 173794 [Multi-domain]  Cd Length: 267  Bit Score: 61.19  E-value: 3.79e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 141 IGVFDGGIWPESESFSDKGFGpppkkwkgicaggknftcNNKLIGARHYSPGDARDSTGHGTHTASIAAGNAvantsffg 220
Cdd:cd04848    7 VGVIDSGIDLSHPEFAGRVSE------------------ASYYVAVNDAGYASNGDGDSHGTHVAGVIAAAR-------- 60
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 221 IGNGTVRGAvPASRIAVYRVCAGECR---DDAILSAFDDAISDGVDIITISIGdINVYPFEKDPIAIG------------ 285
Cdd:cd04848   61 DGGGMHGVA-PDATLYSARASASAGStfsDADIAAAYDFLAASGVRIINNSWG-GNPAIDTVSTTYKGsaatqgntllaa 138
                        170       180
                 ....*....|....*....|....*....
gi 334188485 286 AFHAMSKGILTVNAAGNTGPDTASITSLA 314
Cdd:cd04848  139 LARAANAGGLFVFAAGNDGQANPSLAAAA 167
Peptidases_S8_Thermitase_like cd07484
Peptidase S8 family domain in Thermitase-like proteins; Thermitase is a non-specific, ...
137-541 1.67e-09

Peptidase S8 family domain in Thermitase-like proteins; Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values.


Pssm-ID: 173810 [Multi-domain]  Cd Length: 260  Bit Score: 59.20  E-value: 1.67e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 137 SDTIIGVFDGGIWPESesfsdkgfgppPKKWKGICAGGKNFTCNNkligarhyspGDARDSTGHGTHTASIAAgnAVANt 216
Cdd:cd07484   28 SGVTVAVVDTGVDPTH-----------PDLLKVKFVLGYDFVDND----------SDAMDDNGHGTHVAGIIA--AATN- 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 217 sffgigNGT-VRGAVPASRIAVYRVCA--GECRDDAILSAFDDAISDGVDIITISIGDinvyPFEKDPIAIGAFHAMSKG 293
Cdd:cd07484   84 ------NGTgVAGVAPKAKIMPVKVLDanGSGSLADIANGIRYAADKGAKVINLSLGG----GLGSTALQEAINYAWNKG 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 294 ILTVNAAGNTGPDTASITSLAPWLLTVAASTANRefvskvvlgdgktlvgksvngfdlkgkkfplvygksaalslsqakc 373
Cdd:cd07484  154 VVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQDD---------------------------------------------- 187
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 374 aedctpecldaslvkgkilvcnrflpyvaytKRAvaaifedgsdwaqinglpvsglqkddfespeaavlksesifyqtap 453
Cdd:cd07484  188 -------------------------------KRA---------------------------------------------- 190
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 454 kilSFSSRGPNIivadilkpDITAPGLEILaanslraSPFYDTAYVKYsveSGTSMSCPHAAGVAAYVKTFHPqWSPSMI 533
Cdd:cd07484  191 ---SFSNYGKWV--------DVSAPGGGIL-------STTPDGDYAYM---SGTSMATPHVAGVAALLYSQGP-LSASEV 248

                 ....*...
gi 334188485 534 KSAIMTTA 541
Cdd:cd07484  249 RDALKKTA 256
Peptidases_S8_Lantibiotic_specific_protease cd07482
Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific ...
190-306 1.68e-09

Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases; Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values.


Pssm-ID: 173808 [Multi-domain]  Cd Length: 294  Bit Score: 59.69  E-value: 1.68e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 190 SPGDARDSTGHGTHTA-SIAAgnavantsffgigNGTVRGAVPASRIAVYRVcAGEC---RDDAILSAFDDAISDGVDII 265
Cdd:cd07482   45 DINDIVDKLGHGTAVAgQIAA-------------NGNIKGVAPGIGIVSYRV-FGSCgsaESSWIIKAIIDAADDGVDVI 110
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 334188485 266 TISIG--DINVYPFEKDPIAIGAF-----HAMSKGILTVNAAGNTGPD 306
Cdd:cd07482  111 NLSLGgyLIIGGEYEDDDVEYNAYkkainYAKSKGSIVVAAAGNDGLD 158
Peptidases_S8_BacillopeptidaseF-like cd07481
Peptidase S8 family domain in BacillopeptidaseF-like proteins; Bacillus subtilis produces and ...
458-529 2.93e-08

Peptidase S8 family domain in BacillopeptidaseF-like proteins; Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.


Pssm-ID: 173807 [Multi-domain]  Cd Length: 264  Bit Score: 55.46  E-value: 2.93e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334188485 458 FSSRGPniIVADILKPDITAPGLEILAAnslraspfydTAYVKYSVESGTSMSCPHAAGVAAYVKTFHPQWS 529
Cdd:cd07481  190 FSSRGP--STYGRIKPDISAPGVNIRSA----------VPGGGYGSSSGTSMAAPHVAGVAALLWSANPSLI 249
Peptidases_S53_like cd05562
Peptidase domain in the S53 family; Members of the peptidase S53 (sedolisin) family include ...
459-568 4.90e-08

Peptidase domain in the S53 family; Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase.


Pssm-ID: 173798 [Multi-domain]  Cd Length: 275  Bit Score: 54.99  E-value: 4.90e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 459 SSRGPNIIVadILKPDITAPGlEILAANSLRASPFYDTayvkysveSGTSMSCPHAAGVAAYVKTFHPQWSPSMIKSAIM 538
Cdd:cd05562  179 GIRLPTPEV--RQKPDVTAPD-GVNGTVDGDGDGPPNF--------FGTSAAAPHAAGVAALVLSANPGLTPADIRDALR 247
                         90       100       110
                 ....*....|....*....|....*....|
gi 334188485 539 TTAWSMNAsqSGYastEFAYGAGHVDPIAA 568
Cdd:cd05562  248 STALDMGE--PGY---DNASGSGLVDADRA 272
Peptidases_S8_9 cd07493
Peptidase S8 family domain, uncharacterized subfamily 9; This family is a member of the ...
457-541 6.70e-08

Peptidase S8 family domain, uncharacterized subfamily 9; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173818 [Multi-domain]  Cd Length: 261  Bit Score: 54.23  E-value: 6.70e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 457 SFSSRGPNiivAD-ILKPDITAPGLEIlaanslraspFYDTAYVKYSVESGTSMSCPHAAGVAAYVKTFHPQWSPSMIKS 535
Cdd:cd07493  188 SFSSIGPT---ADgRLKPDVMALGTGI----------YVINGDGNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKE 254

                 ....*.
gi 334188485 536 AIMTTA 541
Cdd:cd07493  255 AILKSA 260
Peptidases_S8_Fervidolysin_like cd07485
Peptidase S8 family domain in Fervidolysin; Fervidolysin found in Fervidobacterium pennivorans ...
140-326 3.95e-06

Peptidase S8 family domain in Fervidolysin; Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values.


Pssm-ID: 173811 [Multi-domain]  Cd Length: 273  Bit Score: 49.02  E-value: 3.95e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 140 IIGVFDGGI---WPESE-SFSDKGFGPppkkwkgiCAGGKNFTCNNKLIgarhysPGDARDSTGHGTHTAS-IAAgnavA 214
Cdd:cd07485   13 IVAVVDTGVdgtHPDLQgNGDGDGYDP--------AVNGYNFVPNVGDI------DNDVSVGGGHGTHVAGtIAA----V 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 215 NTSFFGIGNGTVRGAV-PASRIAVYRVCAGECR--DDAILSAFDDAISDGVDIITISIG---DINVYPFEKDPIAIGAFH 288
Cdd:cd07485   75 NNNGGGVGGIAGAGGVaPGVKIMSIQIFAGRYYvgDDAVAAAIVYAADNGAVILQNSWGgtgGGIYSPLLKDAFDYFIEN 154
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 334188485 289 AMS---KGILTVNAAGNTGPDTASITSLAPWLLTVAASTAN 326
Cdd:cd07485  155 AGGsplDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN 195
Peptidases_S8_4 cd05561
Peptidase S8 family domain, uncharacterized subfamily 4; This family is a member of the ...
191-305 5.17e-06

Peptidase S8 family domain, uncharacterized subfamily 4; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173797 [Multi-domain]  Cd Length: 239  Bit Score: 48.44  E-value: 5.17e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 191 PGDARDSTGHGTHTASIAAGNAVANTSffGIGNGTVRGAVPASRiAVYRVCAGEcrdDAILSAFDDAISDGVDIITISIG 270
Cdd:cd05561   29 GPGAPAPSAHGTAVASLLAGAGAQRPG--LLPGADLYGADVFGR-AGGGEGASA---LALARALDWLAEQGVRVVNISLA 102
                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 334188485 271 DinvypfEKDPI---AIGAfhAMSKGILTVNAAGNTGP 305
Cdd:cd05561  103 G------PPNALlaaAVAA--AAARGMVLVAAAGNDGP 132
germ_prot_CspBA NF040809
bifunctional germination protease/germinant receptor pseudoprotease CspBA; CspBA, as found in ...
459-519 6.19e-06

bifunctional germination protease/germinant receptor pseudoprotease CspBA; CspBA, as found in Clostridium difficile, is translated as a fusion protein, but cleaved into separate homologous CspB and CspA proteins during spore formation. CspB is a protease, required to active SleC by cleaving it in order to trigger germination. CspA, like the bile salt germinant receptor CspC (encoded by the adjacent gene), has lost the catalytic residues necessary for subtilisin-like serine protease activity.


Pssm-ID: 468750 [Multi-domain]  Cd Length: 1099  Bit Score: 49.78  E-value: 6.19e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334188485  459 SSRGPNIivADILKPDITAPGLEILAAnslraspfYDTAyvKYSVESGTSMSCPHAAGVAA 519
Cdd:NF040809  994 SSRGPTI--RNIQKPDIVAPGVNIIAP--------YPGN--TYATITGTSAAAAHVSGVAA 1042
Peptidases_S8_13 cd07496
Peptidase S8 family domain, uncharacterized subfamily 13; This family is a member of the ...
457-540 1.02e-05

Peptidase S8 family domain, uncharacterized subfamily 13; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173820 [Multi-domain]  Cd Length: 285  Bit Score: 48.06  E-value: 1.02e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 457 SFSSRGPNIivadilkpDITAPGLEILA-ANSLRASPFYDTAYV----KYSVESGTSMSCPHAAGVAAYVKTFHPQWSPS 531
Cdd:cd07496  205 SYSNYGPAV--------DVSAPGGDCASdVNGDGYPDSNTGTTSpggsTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPA 276

                 ....*....
gi 334188485 532 MIKSAIMTT 540
Cdd:cd07496  277 QIESLLQST 285
Peptidases_S8_15 cd07498
Peptidase S8 family domain, uncharacterized subfamily 15; This family is a member of the ...
139-326 1.26e-05

Peptidase S8 family domain, uncharacterized subfamily 15; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173822 [Multi-domain]  Cd Length: 242  Bit Score: 47.34  E-value: 1.26e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 139 TIIGVFDGGIWPESESFSDKGfgpppkkwkgICAGGKNFTCNNkligarhyspGDARDSTGHGTHTASIAAgnAVANTsf 218
Cdd:cd07498    1 VVVAIIDTGVDLNHPDLSGKP----------KLVPGWNFVSNN----------DPTSDIDGHGTACAGVAA--AVGNN-- 56
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 219 fGIGngtVRGAVPASRIAVYRVCAGECR--DDAILSAFDDAISDGVDIITISIGDINVYPFEKDPIAiGAFHAM--SKGI 294
Cdd:cd07498   57 -GLG---VAGVAPGAKLMPVRIADSLGYayWSDIAQAITWAADNGADVISNSWGGSDSTESISSAID-NAATYGrnGKGG 131
                        170       180       190
                 ....*....|....*....|....*....|..
gi 334188485 295 LTVNAAGNTGPDTASITSLAPWLLTVAASTAN 326
Cdd:cd07498  132 VVLFAAGNSGRSVSSGYAANPSVIAVAATDSN 163
Peptidases_S8_Subtilisin_Novo-like cd07483
Peptidase S8 family domain in Subtilisin_Novo-like proteins; Subtilisins are a group of ...
474-541 1.30e-05

Peptidase S8 family domain in Subtilisin_Novo-like proteins; Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173809 [Multi-domain]  Cd Length: 291  Bit Score: 47.74  E-value: 1.30e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 334188485 474 DITAPGLEILAANSLRaspfydtayvKYSVESGTSMSCPHAAGVAAYVKTFHPQWSPSMIKSAIMTTA 541
Cdd:cd07483  233 DVFAPGERIYSTTPDN----------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESG 290
Peptidases_S8_14 cd07497
Peptidase S8 family domain, uncharacterized subfamily 14; This family is a member of the ...
455-541 1.86e-05

Peptidase S8 family domain, uncharacterized subfamily 14; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173821 [Multi-domain]  Cd Length: 311  Bit Score: 47.46  E-value: 1.86e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 455 ILSFSSRGPNIIvaDILKPDITAPGLEILAANSLRASPFYDTAYVKYSVESGTSMSCPHAAGVAAYV------KTFHPQW 528
Cdd:cd07497  221 VVSWSSRGPSIA--GDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTSMATPMTAGSAALVisalkeKEGVGEY 298
                         90
                 ....*....|...
gi 334188485 529 SPSMIKSAIMTTA 541
Cdd:cd07497  299 DPFLVRTILMSTA 311
Peptidases_S8_9 cd07493
Peptidase S8 family domain, uncharacterized subfamily 9; This family is a member of the ...
180-331 2.00e-05

Peptidase S8 family domain, uncharacterized subfamily 9; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173818 [Multi-domain]  Cd Length: 261  Bit Score: 46.91  E-value: 2.00e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 180 NNKLIGARHY---SPGDARDSTGHGTHTASIAAGNAvantsffgigNGTVRGAVPASRIAVYR--VCAGECR--DDAILS 252
Cdd:cd07493   26 NLRILGEYDFvdnSNNTNYTDDDHGTAVLSTMAGYT----------PGVMVGTAPNASYYLARteDVASETPveEDNWVA 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 253 AFDDAISDGVDIITISIG-------DINVYPFEKD----PIAIGAFHAMSKGILTVNAAGNTGPDTASITSL---APWLL 318
Cdd:cd07493   96 AAEWADSLGVDIISSSLGyttfdnpTYSYTYADMDgktsFISRAANIAASKGMLVVNSAGNEGSTQWKGIGApadAENVL 175
                        170
                 ....*....|...
gi 334188485 319 TVAASTANREFVS 331
Cdd:cd07493  176 SVGAVDANGNKAS 188
Peptidases_S8_12 cd07480
Peptidase S8 family domain, uncharacterized subfamily 12; This family is a member of the ...
473-519 2.57e-05

Peptidase S8 family domain, uncharacterized subfamily 12; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173806 [Multi-domain]  Cd Length: 297  Bit Score: 46.60  E-value: 2.57e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 334188485 473 PDITAPGLEILAANslraspfydtAYVKYSVESGTSMSCPHAAGVAA 519
Cdd:cd07480  213 VDIAAPGVDIVSAA----------PGGGYRSMSGTSMATPHVAGVAA 249
Peptidases_S8_15 cd07498
Peptidase S8 family domain, uncharacterized subfamily 15; This family is a member of the ...
457-540 4.69e-05

Peptidase S8 family domain, uncharacterized subfamily 15; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173822 [Multi-domain]  Cd Length: 242  Bit Score: 45.41  E-value: 4.69e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 457 SFSSRGPNIivadilkpDITAPGLEILAANSLRASPfYDTAYVKYSVESGTSMSCPHAAGVAAYVKTFHPQWSPSMIKSA 536
Cdd:cd07498  168 SYSNYGNYV--------DLVAPGVGIWTTGTGRGSA-GDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDI 238

                 ....
gi 334188485 537 IMTT 540
Cdd:cd07498  239 LTST 242
Peptidases_S8_12 cd07480
Peptidase S8 family domain, uncharacterized subfamily 12; This family is a member of the ...
192-302 5.37e-05

Peptidase S8 family domain, uncharacterized subfamily 12; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173806 [Multi-domain]  Cd Length: 297  Bit Score: 45.83  E-value: 5.37e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 192 GDARDSTGHGTHTASIAAGNAVAntsffGIGNGTVRGAvpasRIAVYRVCAGECR--DDAILSAFDDAISDGVDIITISI 269
Cdd:cd07480   40 EDVQDGHGHGTHCAGTIFGRDVP-----GPRYGVARGA----EIALIGKVLGDGGggDGGILAGIQWAVANGADVISMSL 110
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 334188485 270 G-DINVYPFEKDPIA-----------------------IGAFHAMSKGILTVNAAGN 302
Cdd:cd07480  111 GaDFPGLVDQGWPPGlafsraleayrqrarlfdalmtlVAAQAALARGTLIVAAAGN 167
Peptidases_S8_Fervidolysin_like cd07485
Peptidase S8 family domain in Fervidolysin; Fervidolysin found in Fervidobacterium pennivorans ...
455-540 2.11e-04

Peptidase S8 family domain in Fervidolysin; Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values.


Pssm-ID: 173811 [Multi-domain]  Cd Length: 273  Bit Score: 43.63  E-value: 2.11e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 455 ILSFSSRGPNIivadilkpDITAPGLEILAANSLRASPFYDTAYVKYSvesGTSMSCPHAAGVAAYVKTFHPQW-SPSMI 533
Cdd:cd07485  198 KASFSNYGRWV--------DIAAPGVGTILSTVPKLDGDGGGNYEYLS---GTSMAAPHVSGVAALVLSKFPDVfTPEQI 266

                 ....*..
gi 334188485 534 KSAIMTT 540
Cdd:cd07485  267 RKLLEES 273
Peptidases_S8_thiazoline_oxidase_subtilisin-like_p cd07476
Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases; Thiazoline oxidase ...
171-322 4.19e-04

Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases; Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).


Pssm-ID: 173802 [Multi-domain]  Cd Length: 267  Bit Score: 42.70  E-value: 4.19e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 171 CAGGKNFTCNNKLIGARhyspGDARDSTGHGTHTASIaagnavantsFFGIGNGTVRGAVPASRIAVYRVCAGE---CRD 247
Cdd:cd07476   27 CFRGANLTPLFTYAAAA----CQDGGASAHGTHVASL----------IFGQPCSSVEGIAPLCRGLNIPIFAEDrrgCSQ 92
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 334188485 248 DAILSAFDDAISDGVDIITISIGDINVYPfEKDPIAIGAFH-AMSKGILTVNAAGNTGPDTASITSLAPWLLTVAA 322
Cdd:cd07476   93 LDLARAINLALEQGAHIINISGGRLTQTG-EADPILANAVAmCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGA 167
Peptidases_S8_SKI-1_like cd07479
Peptidase S8 family domain in SKI-1-like proteins; SKI-1 (type I membrane-bound ...
196-305 2.22e-03

Peptidase S8 family domain in SKI-1-like proteins; SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173805 [Multi-domain]  Cd Length: 255  Bit Score: 40.51  E-value: 2.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 196 DSTGHGTHTASIAAGNavantsffgigNGTVRGAVPASRIAVYRVCAGE--CRDDAILSAFDDAISDGVDIITISIG--D 271
Cdd:cd07479   43 DGLGHGTFVAGVIASS-----------REQCLGFAPDAEIYIFRVFTNNqvSYTSWFLDAFNYAILTKIDVLNLSIGgpD 111
                         90       100       110
                 ....*....|....*....|....*....|....
gi 334188485 272 INVYPFEKDPIAIGAfhamsKGILTVNAAGNTGP 305
Cdd:cd07479  112 FMDKPFVDKVWELTA-----NNIIMVSAIGNDGP 140
Peptidases_S8_Subtilisin_like_2 cd04847
Peptidase S8 family domain in Subtilisin-like proteins; This family is a member of the ...
139-324 2.65e-03

Peptidase S8 family domain in Subtilisin-like proteins; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173793 [Multi-domain]  Cd Length: 291  Bit Score: 40.36  E-value: 2.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 139 TIIGVFDGGIwpesesfsdkGFGPPPKKWkgicaggknftcnnkLIGARHYSPGDARDST---GHGTHTASIAA-GNAva 214
Cdd:cd04847    1 PIVCVLDSGI----------NRGHPLLAP---------------ALAEDDLDSDEPGWTAddlGHGTAVAGLALyGDL-- 53
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 215 ntsfFGIGNGTVRgavPASRIAVYRVCAGECRDDAILSAFD--DAIS-------DGVDIITISIGDinvypfeKDPIAIG 285
Cdd:cd04847   54 ----TLPGNGLPR---PGCRLESVRVLPPNGENDPELYGDItlRAIRraviqnpDIVRVFNLSLGS-------PLPIDDG 119
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 286 AFHAMS---------KGILTVNAAGNTGPDTASITSLAPWL------------LTVAAST 324
Cdd:cd04847  120 RPSSWAaaldqlaaeYDVLFVVSAGNLGDDDAADGPPRIQDdeiedpadsvnaLTVGAIT 179
Peptidases_S8_Tripeptidyl_Aminopeptidase_II cd04857
Peptidase S8 family domain in Tripeptidyl aminopeptidases_II; Tripeptidyl aminopeptidases II ...
196-305 2.75e-03

Peptidase S8 family domain in Tripeptidyl aminopeptidases_II; Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.


Pssm-ID: 173796 [Multi-domain]  Cd Length: 412  Bit Score: 40.73  E-value: 2.75e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 196 DSTGHGTHTASIAAGNAVAntsffgigNGTVRGAVPASRIAVYRVcaGECRDD------AILSAFDDAISDGVDIITISI 269
Cdd:cd04857  183 DSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKI--GDTRLGsmetgtALVRAMIAAIETKCDLINMSY 252
                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 334188485 270 GDINVYPfEKDPIAIGAFHAMSK-GILTVNAAGNTGP 305
Cdd:cd04857  253 GEATHWP-NSGRIIELMNEAVNKhGVIFVSSAGNNGP 288
Peptidases_S8_11 cd04843
Peptidase S8 family domain, uncharacterized subfamily 11; This family is a member of the ...
196-308 2.96e-03

Peptidase S8 family domain, uncharacterized subfamily 11; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173792  Cd Length: 277  Bit Score: 40.37  E-value: 2.96e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188485 196 DSTGHGTHTASI--AAGNavantsffGIGngtVRGAVPASRIAVYRVCAGECRDDAILSAFDdAISDGvDIITISI---G 270
Cdd:cd04843   49 ADSDHGTAVLGIivAKDN--------GIG---VTGIAHGAQAAVVSSTRVSNTADAILDAAD-YLSPG-DVILLEMqtgG 115
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 334188485 271 DINVYPFEKDPIAIGAFHAMS----KGILTVNAAGNTGPDTA 308
Cdd:cd04843  116 PNNGYPPLPVEYEQANFDAIRtatdLGIIVVEAAGNGGQDLD 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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