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Conserved domains on  [gi|334184840|ref|NP_001189719|]
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light harvesting complex photosystem II [Arabidopsis thaliana]

Protein Classification

chlorophyll a-b binding domain-containing protein( domain architecture ID 859)

chlorophyll a-b binding domain-containing protein such as plant chlorophyll a-b binding proteins, which are components of the light-harvesting complex (LHC) that functions as a light receptor, capturing and delivering excitation energy to photosystems with which it is closely associated

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00089 super family cl02879
fucoxanthin-chlorophyll a/c binding protein; Provisional
 10-173 2.86e-105

fucoxanthin-chlorophyll a/c binding protein; Provisional


The actual alignment was detected with superfamily member PLN00187:

Pssm-ID: 470693  Cd Length: 286  Bit Score: 303.64  E-value: 2.86e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184840  10 SGIFGIRIQDPRPGTGRVQARFGFsfGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAE 89
Cdd:PLN00187   8 SSFMGTRVPDVASNSGRIVARFGF--GKKKKAAKKAKKKSSKVGADRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAE 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184840  90 YLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDA 169
Cdd:PLN00187  86 YLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEALTGVTWQDA 165


                 ....
gi 334184840 170 GKVE 173
Cdd:PLN00187 166 GKVE 169
 
Name Accession Description Interval E-value
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 10-173 2.86e-105

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 303.64  E-value: 2.86e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184840  10 SGIFGIRIQDPRPGTGRVQARFGFsfGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAE 89
Cdd:PLN00187   8 SSFMGTRVPDVASNSGRIVARFGF--GKKKKAAKKAKKKSSKVGADRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAE 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184840  90 YLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDA 169
Cdd:PLN00187  86 YLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEALTGVTWQDA 165


                 ....
gi 334184840 170 GKVE 173
Cdd:PLN00187 166 GKVE 169
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
65-176 3.97e-21

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 84.67  E-value: 3.97e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184840   65 PPEWLDGSMIGDRGFDPFGLGKPAEylqydfdgldqnlaknvagdiigiiqesseikptpfqpytevfGIQRFRECELIH 144
Cdd:pfam00504   1 PPAYLDGSLPGDYGFDPLGLSADPE-------------------------------------------TFKRYREAELKH 37

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 334184840  145 GRWAMLGTLGAIAVEALTGI------AWQDAGKVESSQ 176
Cdd:pfam00504  38 GRWAMLAVLGALVPEALGKLgggnepVWFEAGAVALHA 75
 
Name Accession Description Interval E-value
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 10-173 2.86e-105

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 303.64  E-value: 2.86e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184840  10 SGIFGIRIQDPRPGTGRVQARFGFsfGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAE 89
Cdd:PLN00187   8 SSFMGTRVPDVASNSGRIVARFGF--GKKKKAAKKAKKKSSKVGADRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAE 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184840  90 YLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDA 169
Cdd:PLN00187  86 YLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEALTGVTWQDA 165


                 ....
gi 334184840 170 GKVE 173
Cdd:PLN00187 166 GKVE 169
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
65-176 3.97e-21

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 84.67  E-value: 3.97e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184840   65 PPEWLDGSMIGDRGFDPFGLGKPAEylqydfdgldqnlaknvagdiigiiqesseikptpfqpytevfGIQRFRECELIH 144
Cdd:pfam00504   1 PPAYLDGSLPGDYGFDPLGLSADPE-------------------------------------------TFKRYREAELKH 37

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 334184840  145 GRWAMLGTLGAIAVEALTGI------AWQDAGKVESSQ 176
Cdd:pfam00504  38 GRWAMLAVLGALVPEALGKLgggnepVWFEAGAVALHA 75
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
 55-173 4.29e-16

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 73.79  E-value: 4.29e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184840  55 DRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYdfdgldqnlaknvagdiigiiqesseikptpfqpytevfgi 134
Cdd:PLN00098  61 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKW----------------------------------------- 99

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 334184840 135 qrFRECELIHGRWAMLGTLGAIAVEALTGI------AWQDAGKVE 173
Cdd:PLN00098 100 --FAQAELMHSRWAMLAVAGILIPECLERLgfienfSWYDAGARE 142
PLN00097 PLN00097
photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
 50-171 1.66e-13

photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional


Pssm-ID: 165670 [Multi-domain]  Cd Length: 244  Bit Score: 66.57  E-value: 1.66e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184840  50 VQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYdfdgldqnlaknvagdiigiiqesseikptpfqpyt 129
Cdd:PLN00097  38 VAAAADRPTWLPGKAAAAHLDGSLPCDYGFDPLNLGADPEMLKW------------------------------------ 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 334184840 130 evfgiqrFRECELIHGRWAMLGTLGAIAVEALTGIA------WQDAGK 171
Cdd:PLN00097  82 -------FVQAELMHARWAMLGLAGCVAPELLTKIGmadlpnWIDAAK 122
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 59-170 1.86e-13

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 66.49  E-value: 1.86e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184840  59 WFPGAN------PPEWLDGSMIGDRGFDPFGLGKPAEYLQYdfdgldqnlaknvagdiigiiqesseikptpfqpytevf 132
Cdd:PLN00170  54 WIPAVKgggnlvDPEWLDGSLPGDYGFDPLGLGKDPAFLKW--------------------------------------- 94

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 334184840 133 giqrFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAG 170
Cdd:PLN00170  95 ----YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG 128
PLN00100 PLN00100
light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
 59-172 2.82e-13

light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional


Pssm-ID: 215054  Cd Length: 246  Bit Score: 65.67  E-value: 2.82e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184840  59 WFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYdfdgldqnlaknvagdiigiiqesseikptpfqpytevfgiqrFR 138
Cdd:PLN00100  38 WYPGATAPKYLDGTMAGDYGFDPLRLGANPETLPY-------------------------------------------LQ 74

                         90       100       110
                 ....*....|....*....|....*....|....
gi 334184840 139 ECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKV 172
Cdd:PLN00100  75 EAELMNGRWAMAATAGILFTDAVGLPKFWEAGAE 108
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
 59-173 5.24e-12

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 62.24  E-value: 5.24e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184840  59 WFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYdfdgldqnlaknvagdiigiiqesseikptpfqpytevfgiqrFR 138
Cdd:PLN00101  56 WLPGLASPGYLNGSLPGDNGFDPLGLAEDPENLKW-------------------------------------------FV 92

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 334184840 139 ECELIHGRWAMLGTLGAIAVEALTGIA------WQDAGKVE 173
Cdd:PLN00101  93 QAELVNGRWAMLGVAGMLLPEVFTKIGiinapqWYDAGKAE 133
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 55-173 8.33e-12

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 61.82  E-value: 8.33e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184840  55 DRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYdfdgldqnlaknvagdiigiiqesseikptpfqpytevfgi 134
Cdd:PLN00147  44 ERPTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPESLKW----------------------------------------- 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 334184840 135 qrFRECELIHGRWAMLGTLGAIAVEAL--TGI----AWQDAGKVE 173
Cdd:PLN00147  83 --YVQAELVHSRFAMAGVAGILFTDLLrvTGIrnlpVWYEAGAVK 125
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 59-169 3.27e-11

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 60.04  E-value: 3.27e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184840  59 WFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLqydfdgldqnlaknvagdiigiiqesseikptpfqpytevfgiQRFR 138
Cdd:PLN00099  47 WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENL-------------------------------------------ERYK 83

                         90       100       110
                 ....*....|....*....|....*....|.
gi 334184840 139 ECELIHGRWAMLGTLGAIAVEALTGIAWQDA 169
Cdd:PLN00099  84 ESELIHCRWAMLAVPGILVPEALGLGNWVKA 114
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 50-170 2.46e-08

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 52.16  E-value: 2.46e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184840  50 VQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEylqydfdgldqnlaknvAGDIIgiiqesseikpTP-FQPY 128
Cdd:PLN00048  36 AKQGADRQLWFASKQSLSYLDGTLPGDFGFDPLGLSDPEG-----------------AGGFI-----------EPqWLAY 87

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 334184840 129 TEVfgiqrfrecelIHGRWAMLGTLGAIAVEAL---------TGIAWQDAG 170
Cdd:PLN00048  88 GEV-----------INGRFAMLGAAGAIAPEILgkaglipqeTALPWFQSG 127
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 136-161 2.56e-06

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 46.28  E-value: 2.56e-06
                         10        20
                 ....*....|....*....|....*.
gi 334184840 136 RFRECELIHGRWAMLGTLGAIAVEAL 161
Cdd:PLN00025  90 RNRELEVIHARWAMLGALGCVTPELL 115
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 54-161 4.86e-04

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 39.79  E-value: 4.86e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184840  54 GDRLVWFpGANP---PEWLDGSMIGDRGFDPFGLGKpaeylqydfdgldqnlaknvagdiigiiqesseiKPTPFQpyte 130
Cdd:PLN00171 106 EERPRWL-GPIPydyPDHLTGELPGDYGFDIAGLGK----------------------------------DPVAFD---- 146

                         90       100       110
                 ....*....|....*....|....*....|.
gi 334184840 131 vfgiqRFRECELIHGRWAMLGTLGAIAVEAL 161
Cdd:PLN00171 147 -----KYFNFEILHARWAMLAALGVVIPEVL 172
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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