|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
703-1118 |
1.25e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 1.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 703 QERLEQLEGKLLIYESSGETQARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEF-------EEAENDTRLH 775
Cdd:COG1196 336 EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELaaqleelEEAEEALLER 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 776 LQRNEVELEILRQRNVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLL 855
Cdd:COG1196 416 LERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 856 SLAKMGNEESSPGGSPRL-----SSGYTSSIHQDRDFSAK----IQTTEFDLGQAGFTDSGE--EREIVYLKEEVKSLRS 924
Cdd:COG1196 496 LLEAEADYEGFLEGVKAAlllagLRGLAGAVAVLIGVEAAyeaaLEAALAAALQNIVVEDDEvaAAAIEYLKAAKAGRAT 575
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 925 QLKELNARHYEAMETADSHWVD------LEQQYKEREEAQQAKEASLKQKIAQLQDCLREDSRAATEKIQQLE-----EG 993
Cdd:COG1196 576 FLPLDKIRARAALAAALARGAIgaavdlVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREvtlegEG 655
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 994 ELSLKSCLVRMTKEHRDLLTENRTLQCSLESLMAKMEKEAEHKmplTEALENERRKTQALMDDLIFAKKVQQNTEDQLRQ 1073
Cdd:COG1196 656 GSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEA---LLAEEEEERELAEAEEERLEEELEEEALEEQLEA 732
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 442618062 1074 ETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENQMR 1118
Cdd:COG1196 733 EREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIE 777
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
702-998 |
2.69e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.88 E-value: 2.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 702 YQERLEQLEGKLLiyessgetqARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQRNEV 781
Cdd:COG1196 218 LKEELKELEAELL---------LLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQA 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 782 ELEILRQRNVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKMG 861
Cdd:COG1196 289 EEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 862 NEESSpggsprlssgytssihqdrdfSAKIQTTEFDLGQAGFTDSGEEREIVYLKEEVKSLRSQLKELNARHYEAMETAD 941
Cdd:COG1196 369 EAEAE---------------------LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 442618062 942 SHWVDLEQQYKEREEAQQAKEASLKQKIAQLQDcLREDSRAATEKIQQLEEGELSLK 998
Cdd:COG1196 428 EALAELEEEEEEEEEALEEAAEEEAELEEEEEA-LLELLAELLEEAALLEAALAELL 483
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
733-1053 |
4.58e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.11 E-value: 4.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 733 RELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDtrlhLQRNEVELEILRQRNVELEFGKEALGAKYQDCRAEVL 812
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAE----LEELEAELAELEAELEELRLELEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 813 ILREDLAAAETQLEHLQAERKQARKELQDLRrslplllifrllslakmgneesspggsprlssgytssihqdrdfsAKIQ 892
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELE---------------------------------------------EELA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 893 TTEFDLGQAGFTDSGEEREIVYLKEEVKSLRSQLKELNARHYEA---METADSHWVDLEQQYKEREEAQQAKEASLKQKI 969
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAeaeLAEAEEELEELAEELLEALRAAAELAAQLEELE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 970 AQLQDCLREDSRAATEK------IQQLEEGELSLKSCLVRMTKEHRDLLTENRTLQCSLESLMAKMEKEAEHKMPLTEAL 1043
Cdd:COG1196 407 EAEEALLERLERLEEELeeleeaLAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
330
....*....|
gi 442618062 1044 ENERRKTQAL 1053
Cdd:COG1196 487 AEAAARLLLL 496
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
698-973 |
9.27e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 9.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 698 HLQFYQERLEQLEGKLLIYESSGETQARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQ 777
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 778 RNEVELEILRQRNVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSL 857
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 858 AKMGNEEsspggsprlssgytSSIHQDRDFSAKIQTTEFDLGQAGFTDSGEEREIVYLKEEVKSLRSQLKELNARHYEAM 937
Cdd:COG1196 393 RAAAELA--------------AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
250 260 270
....*....|....*....|....*....|....*.
gi 442618062 938 ETADSHWVDLEQQYKEREEAQQAKEASLKQKIAQLQ 973
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
|
| JAKMIP_CC3 |
pfam16034 |
JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP ... |
478-557 |
1.91e-08 |
|
JAKMIP CC3 domain; This domain is found at the C-terminus of proteins belonging to the JAKMIP family (Janus kinase and microtubule-interacting proteins) and is predicted to be a coiled coil. It interacts with the Janus family kinases Tyk2 and Jak1.
Pssm-ID: 464986 [Multi-domain] Cd Length: 199 Bit Score: 55.66 E-value: 1.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 478 EAEMYQKENERLQTEVQLMKQELDAAEKAAISRA-------KKQAQIG---ELMQRIKELEEMQSSLEDEASELREQNEL 547
Cdd:pfam16034 101 DAEREAKTREQLQAELRRAQSRIEDLESALAQKGqdskwveEKQALIRrnqELVEKIRIMEQEEGRLKNEIQDARDQNEL 180
|
90
....*....|
gi 442618062 548 LEFRILELED 557
Cdd:pfam16034 181 LEFRILELEE 190
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
909-1150 |
6.29e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 6.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 909 EREIVYLKEEVKSLRSQLKELNARHYEA---METADSHWVDLEQQ---YKEREEAQQAKEASLKQKIAQL---QDCLRED 979
Cdd:TIGR02169 687 KRELSSLQSELRRIENRLDELSQELSDAsrkIGEIEKEIEQLEQEeekLKERLEELEEDLSSLEQEIENVkseLKELEAR 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 980 SRAATEKIQQLEEGELSLKSCLVR-MTKEHRDLLTENRTLQCSLESLMAKMEKEAEHKMPLTEALENERRKTQALMDDLi 1058
Cdd:TIGR02169 767 IEELEEDLHKLEEALNDLEARLSHsRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL- 845
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 1059 fakkvqQNTEDQLRQETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENQMRDSEERARCLEDELRTKDEQC 1138
Cdd:TIGR02169 846 ------KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRL 919
|
250
....*....|..
gi 442618062 1139 QLLERKLGVMPE 1150
Cdd:TIGR02169 920 SELKAKLEALEE 931
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
735-1057 |
1.52e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 1.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 735 LQLEKDLKELADRVELLIEQNAQLEEAkcefeeaendtrlhLQRNEVELEILRQRNVELEFGKEALGAKYQDCRAEVLIL 814
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKA--------------LAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 815 REDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKMGNEESSPGgspRLSSGYTSSIHQDRDFSAKIQTT 894
Cdd:TIGR02168 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE---QLKEELKALREALDELRAELTLL 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 895 EFDLGQAGFTDSGEEREIVYLKEEVKSLRSQLKELNARHYEAMETADSHWVDLEQQYKEREEAQQAKE------ASLKQK 968
Cdd:TIGR02168 816 NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAsleealALLRSE 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 969 IAQLQDCLREDSRAATEKIQQLEEGELSLKSCLVRMTKehrdllTENRtLQCSLESLMAKMEKEAEHKMPLTEALENERR 1048
Cdd:TIGR02168 896 LEELSEELRELESKRSELRRELEELREKLAQLELRLEG------LEVR-IDNLQERLSEEYSLTLEEAEALENKIEDDEE 968
|
....*....
gi 442618062 1049 KTQALMDDL 1057
Cdd:TIGR02168 969 EARRRLKRL 977
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
703-993 |
1.59e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 1.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 703 QERLEQLEGKLLIYESSGEtQARHLAQRLQREL-QLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLhlqrnev 781
Cdd:TIGR02168 697 EKALAELRKELEELEEELE-QLRKELEELSRQIsALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEE------- 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 782 ELEILRQRNVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKMG 861
Cdd:TIGR02168 769 RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 862 NEESSpggsprlSSGYTSSIHQDRDFSAKIqttefdlgqagftdsgeEREIVYLKEEVKSLRSQLKELNARHYEAMET-- 939
Cdd:TIGR02168 849 ELSED-------IESLAAEIEELEELIEEL-----------------ESELEALLNERASLEEALALLRSELEELSEElr 904
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 442618062 940 -ADSHWVDLEQQYKEREEAQ---QAKEASLKQKIAQLQDCLREDSRAATEKIQQLEEG 993
Cdd:TIGR02168 905 eLESKRSELRRELEELREKLaqlELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENK 962
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
742-1120 |
1.71e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 1.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 742 KELADRVELLIEQNAQLEEAKCEFEEAEndtrLHLQRNEVELEILRQRNVELEFGKEALgAKYQDCRA-----EVLILRE 816
Cdd:TIGR02169 156 RKIIDEIAGVAEFDRKKEKALEELEEVE----ENIERLDLIIDEKRQQLERLRREREKA-ERYQALLKekreyEGYELLK 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 817 DLAAAETQLEHLQAERKQARKELQDL--RRSLPLLLIFRLLSLAKMGNEESSPGGSPRLssgytssihqdRDFSAKIQTT 894
Cdd:TIGR02169 231 EKEALERQKEAIERQLASLEEELEKLteEISELEKRLEEIEQLLEELNKKIKDLGEEEQ-----------LRVKEKIGEL 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 895 EFDLGQAgftdsgeEREIVYLKEEVKSLRSQLKELNARHYEAMETADSHWVDLEQQYKERE---EAQQAKEASLKQKIAQ 971
Cdd:TIGR02169 300 EAEIASL-------ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDkltEEYAELKEELEDLRAE 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 972 LQDcLREDSRAATEKIQQLEEGelslkscLVRMTKEHRDLLTENRTLQcslESLMAKMEKEAEHKMPLtEALENERRKTQ 1051
Cdd:TIGR02169 373 LEE-VDKEFAETRDELKDYREK-------LEKLKREINELKRELDRLQ---EELQRLSEELADLNAAI-AGIEAKINELE 440
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442618062 1052 ALMDDLIFAKKVQQNTEDQLRQETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENQMRDS 1120
Cdd:TIGR02169 441 EEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGG 509
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
703-1142 |
2.44e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.43 E-value: 2.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 703 QERLEQLEGKLLIYESSGETQARHLAQRLQRELQLEKDLKELADRVEL-------LIEQNAQLEEAKCEFEEAENDTRLH 775
Cdd:PRK02224 257 EAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLddadaeaVEARREELEDRDEELRDRLEECRVA 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 776 LQRNEVELEILRQ-------RNVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQA-------ERKQARKELQD 841
Cdd:PRK02224 337 AQAHNEEAESLREdaddleeRAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRErfgdapvDLGNAEDFLEE 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 842 LRRSLPLLLIFRLLSLAKMGNEESSPGGSPRLSSgytssihqdrdfSAKIQTTEFDLGQAGFTDSGEERE--IVYLKEEV 919
Cdd:PRK02224 417 LREERDELREREAELEATLRTARERVEEAEALLE------------AGKCPECGQPVEGSPHVETIEEDRerVEELEAEL 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 920 KSLRSQLKELNARH---YEAMETAD---------SHWVDLEQQYKEREEAQQAKEASLKQKIAQLQDCLREDSRAATEKI 987
Cdd:PRK02224 485 EDLEEEVEEVEERLeraEDLVEAEDrierleerrEDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAE 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 988 QQLEEGELSLKSCLVRMT--KEHRDLLTENRTLQCSLESLMAKMEKEAEHKMPLTEaLENERRKTQALMDDLI--FAKKV 1063
Cdd:PRK02224 565 EEAEEAREEVAELNSKLAelKERIESLERIRTLLAAIADAEDEIERLREKREALAE-LNDERRERLAEKRERKreLEAEF 643
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442618062 1064 QQNTEDQLRQETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENqmrdseerarcLEDELRTKDEQCQLLE 1142
Cdd:PRK02224 644 DEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEE-----------LRERREALENRVEALE 711
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
470-1119 |
5.48e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 5.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 470 QDLDKLQKEAEMYQKENERLQTEVQLMKQELDAAEKAAISRAKK----QAQIGELMQRIKELEEMQSSLEDEASELREQN 545
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEeyelLAELARLEQDIARLEERRRELEERLEELEEEL 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 546 ELLEFRILELEDDSDKMESTCEGHCQSLQDLLEQSAQRLEDRDKRCLQQLLQCVQQLDLdtmmpgdQNRTETPKRHNSTH 625
Cdd:COG1196 326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEEL-------AEELLEALRAAAEL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 626 SHSHSHSHSqshnhrivatvqpysncatptapptpskrhcnqvsswqssslsesgvfvecdllsnpnpighpHLQFYQER 705
Cdd:COG1196 399 AAQLEELEE---------------------------------------------------------------AEEALLER 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 706 LEQLEGKLLIYESSGETQARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQRNEVELEI 785
Cdd:COG1196 416 LERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 786 LRQRNVELEF-----GKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAER------------KQARKELQDLRRSLPL 848
Cdd:COG1196 496 LLEAEADYEGflegvKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAAlqnivveddevaAAAIEYLKAAKAGRAT 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 849 LLIFRLLSLAKMGNEESSPGGSPRLSSGYTSSIHQDRDFSAKIQTTEFDLGQAGFTDSGEEREIVYLKEEVKSLRSQLKE 928
Cdd:COG1196 576 FLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEG 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 929 LNARhyeAMETADShwvdlEQQYKEREEAQQAKEASLKQKIAQLQDCLREDSRAATEKIQQLEEGELSLKSCLVRMTKEH 1008
Cdd:COG1196 656 GSAG---GSLTGGS-----RRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 1009 RDLLTENR---TLQCSLESLMAKMEKEAEHKMPLTEALENERRKTQALMDDLifaKKVQQNTEDQLRQET---DALRTQi 1082
Cdd:COG1196 728 EQLEAEREellEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL---GPVNLLAIEEYEELEeryDFLSEQ- 803
|
650 660 670
....*....|....*....|....*....|....*..
gi 442618062 1083 fniKKDylhievtngeLKEEVGTLENKIRQMENQMRD 1119
Cdd:COG1196 804 ---RED----------LEEARETLEEAIEEIDRETRE 827
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
700-1034 |
2.68e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 2.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 700 QFYQERLEQLEGKLLIYESSGETQARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQRN 779
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 780 EVELEILRQRnvelefgKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAK 859
Cdd:TIGR02168 823 RERLESLERR-------IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE 895
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 860 MgneesspggsprlssgytssihqdRDFSAKIQTTEFDLGQAgftdsgeEREIVYLKEEVKSLRSQLKELNARHYEAMET 939
Cdd:TIGR02168 896 L------------------------EELSEELRELESKRSEL-------RRELEELREKLAQLELRLEGLEVRIDNLQER 944
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 940 ADSHWVDLEQQYKEREEAQQAKEASLKQKIAQLQDCLREDSRAATEKIQQLEEgelsLKSCLVRMTKEHRDlLTENRTlq 1019
Cdd:TIGR02168 945 LSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEE----LKERYDFLTAQKED-LTEAKE-- 1017
|
330
....*....|....*
gi 442618062 1020 cSLESLMAKMEKEAE 1034
Cdd:TIGR02168 1018 -TLEEAIEEIDREAR 1031
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
703-1144 |
2.79e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.86 E-value: 2.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 703 QERLEQLEGKLLIYESSGETQARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQRNEVE 782
Cdd:COG1196 259 EAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 783 LEILRQRNVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKMGN 862
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 863 EESSpggsprlssgYTSSIHQDRDFSAKIQTTEFDLGQAGFTDSGEEREIVYLKEEVKSLRSQLKELNARHYEAMETADS 942
Cdd:COG1196 419 LEEE----------LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 943 ----HWVDLEQQYKEREEAQQAKEASLKQKIAQLQDCLREDSRAATEKIQQLEEGELSLKSCLVRmtkehRDLLTENRTL 1018
Cdd:COG1196 489 aaarLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVV-----EDDEVAAAAI 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 1019 QCSLESLMAKMEKEAEHKMPLTEALENERRKTQALMD-DLIFAKKVQQNTEDQLRQETDALRTQIFNIKKDYLHIEVTNG 1097
Cdd:COG1196 564 EYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAvDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLA 643
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 442618062 1098 ELKEEV---GTLENKIRQMENQMRDSEERARCLEDELRTKDEQCQLLERK 1144
Cdd:COG1196 644 GRLREVtleGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
699-978 |
3.37e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 3.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 699 LQFYQERLEQLEGKLLIYESsgETQARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAEND--TRLH- 775
Cdd:TIGR02168 215 YKELKAELRELELALLVLRL--EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEElqKELYa 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 776 ----LQRNEVELEILRQRNVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLI 851
Cdd:TIGR02168 293 laneISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELES 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 852 FRLLSLAKMGneesspggspRLSSGYTSSIHQDRDFSAKIQTTEFDLGQAG-----FTDSGEEREIVYLKEEVKSLRSQL 926
Cdd:TIGR02168 373 RLEELEEQLE----------TLRSKVAQLELQIASLNNEIERLEARLERLEdrrerLQQEIEELLKKLEEAELKELQAEL 442
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 442618062 927 KELNARHYEAMETADSHWVDLEQQYKEREEAQQA------KEASLKQKIAQLQDCLRE 978
Cdd:TIGR02168 443 EELEEELEELQEELERLEEALEELREELEEAEQAldaaerELAQLQARLDSLERLQEN 500
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
698-845 |
8.19e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 8.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 698 HLQFYQERLEQLEGKLLIYEssgetqarhlAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENdtrlhlq 777
Cdd:TIGR02168 303 QKQILRERLANLERQLEELE----------AQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEA------- 365
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442618062 778 rnevELEILRQRNVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRS 845
Cdd:TIGR02168 366 ----ELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKK 429
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
703-1145 |
9.69e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 9.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 703 QERLEQLEGKLliyessGETQARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQRNEVE 782
Cdd:PRK02224 186 RGSLDQLKAQI------EEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 783 LEILRQRNVELEFGKEALGAKYQDCRAEVLILREDL--AAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKM 860
Cdd:PRK02224 260 IEDLRETIAETEREREELAEEVRDLRERLEELEEERddLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQA 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 861 GNEEsspggsprlSSGYTSSIHQDRDFSAKIQTTEFDLgqagftdsgeEREIVYLKEEVKSLRSQLKELNARHYEAMETA 940
Cdd:PRK02224 340 HNEE---------AESLREDADDLEERAEELREEAAEL----------ESELEEAREAVEDRREEIEELEEEIEELRERF 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 941 DSHWVDLEQQYKEREEAQQAKEAsLKQKIAQLQDCLREDSRAATEKIQQLEEG---------ELSLKSCLVRMTKEHRDL 1011
Cdd:PRK02224 401 GDAPVDLGNAEDFLEELREERDE-LREREAELEATLRTARERVEEAEALLEAGkcpecgqpvEGSPHVETIEEDRERVEE 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 1012 LTENR-TLQCSLESLMAKME-----KEAEHKMpltEALENERRKTQALMDDLIFAKKVQQNTEDQLRQETDALRTQIFNI 1085
Cdd:PRK02224 480 LEAELeDLEEEVEEVEERLEraedlVEAEDRI---ERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEK 556
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 1086 KKDYLHIEVTNGELKEEVGTLENKiRQMENQMRDSEERARCLEDELRTKDEQCQLLERKL 1145
Cdd:PRK02224 557 REAAAEAEEEAEEAREEVAELNSK-LAELKERIESLERIRTLLAAIADAEDEIERLREKR 615
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
755-1132 |
1.03e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 755 NAQLEEAKCEFEEAENDTRLHLQRNEVELEILRQRnvelefgkEALgAKYQDCRAEVlilredlaaaETQLEHLQAERKQ 834
Cdd:TIGR02168 151 EAKPEERRAIFEEAAGISKYKERRKETERKLERTR--------ENL-DRLEDILNEL----------ERQLKSLERQAEK 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 835 ArKELQDLRRSLPLLLIFRLLSLAKMGNEESSpggspRLSSGYTSSIHQDRDFSAKIQTTEFDLGQAGFTDSGEEREIVY 914
Cdd:TIGR02168 212 A-ERYKELKAELRELELALLVLRLEELREELE-----ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEE 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 915 LKEEVKSLRSQLKELNAR---HYEAMETADSHWVDLE---QQYKEREEAQQAKEASLKQKIAQLQDCLREDSRAATEKIQ 988
Cdd:TIGR02168 286 LQKELYALANEISRLEQQkqiLRERLANLERQLEELEaqlEELESKLDELAEELAELEEKLEELKEELESLEAELEELEA 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 989 QLEEGELSLKSClvrmTKEHRDLLTENRTLQCSLESLMAKMEKEAEHKMPLTEALENERRKTQALMDDLIFAKKvqqnte 1068
Cdd:TIGR02168 366 ELEELESRLEEL----EEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL------ 435
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 442618062 1069 DQLRQETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENQMRDSEERARCLEDELR 1132
Cdd:TIGR02168 436 KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE 499
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
909-1145 |
1.67e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 1.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 909 EREIVYLKEEVKSLRSQLKELNARhyeaMETADSHWVDLEQQYKERE---EAQQAKEASLKQKIAQLQ---DCLREDSRA 982
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAE----LAELEAELEELRLELEELElelEEAQAEEYELLAELARLEqdiARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 983 ATEKIQQLEEGELSLKsclvrmtKEHRDLLTENRTLQCSLESLMAKMEKEAEHKmpltEALENERRKTQALMDDLIFAKK 1062
Cdd:COG1196 314 LEERLEELEEELAELE-------EELEELEEELEELEEELEEAEEELEEAEAEL----AEAEEALLEAEAELAEAEEELE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 1063 VQQNTEDQLRQETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENQMRDSEERARCLEDELRTKDEQCQLLE 1142
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
...
gi 442618062 1143 RKL 1145
Cdd:COG1196 463 ELL 465
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
703-1145 |
1.78e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 1.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 703 QERLEQLEGKLLIYESSGETQARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQRNEVE 782
Cdd:COG1196 280 ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 783 LEILRQRNVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKMGN 862
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 863 EESspggsprlssgytssihQDRDFSAKIQTTEFDLGQAGFTDSGEEREIVYLKEEVKSLRSQLKELNARHYEAMETADS 942
Cdd:COG1196 440 EEE-----------------ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 943 HWVDLEQQYKEREEAQQAKEASLKQKI----------------AQLQDCLREDSRAATEKIQQLEEGELSLKSCLVRMTK 1006
Cdd:COG1196 503 YEGFLEGVKAALLLAGLRGLAGAVAVLigveaayeaaleaalaAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKI 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 1007 EHRDLLTENRTLQCSLESLMAKMEKEAEHKMPLTEALENERRKTQAlmDDLIFAKKVQQNTEDQLRQETDALRTQIFNIK 1086
Cdd:COG1196 583 RARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV--AARLEAALRRAVTLAGRLREVTLEGEGGSAGG 660
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 442618062 1087 KDYLHIEVTNGELKEEVGTLENKIRQMENQMRDSEERARCLEDELRTKDEQCQLLERKL 1145
Cdd:COG1196 661 SLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE 719
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
721-844 |
2.71e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 2.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 721 ETQARHLAQRLQrelQLEKDLKELADRVELLIEQNAQLEEAKcEFEEAENDT---RLHLQRNEVELEILRQRNVELefgk 797
Cdd:COG4913 616 EAELAELEEELA---EAEERLEALEAELDALQERREALQRLA-EYSWDEIDVasaEREIAELEAELERLDASSDDL---- 687
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 442618062 798 EALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRR 844
Cdd:COG4913 688 AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQD 734
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
717-842 |
4.18e-05 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 47.76 E-value: 4.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 717 ESSGETQARHLAQRLQRELQLEKDLKELADRvellieqnaqLEEAKCEFEEAENDTRLHLQR---NEVELEILRQRNVEL 793
Cdd:COG0497 239 EGGALDLLGQALRALERLAEYDPSLAELAER----------LESALIELEEAASELRRYLDSlefDPERLEEVEERLALL 308
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 442618062 794 EfgkeALGAKYQDCRAEVLILREDLAA-------AETQLEHLQAERKQARKELQDL 842
Cdd:COG0497 309 R----RLARKYGVTVEELLAYAEELRAelaelenSDERLEELEAELAEAEAELLEA 360
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
698-1174 |
6.47e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 6.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 698 HLQFYQERLEQLEGKLLIYESSgETQARHLAQRLQRELQLEKDLKELAD---RVELLIEQNAQLEEAKCEFEEAENDtrl 774
Cdd:COG4717 89 EYAELQEELEELEEELEELEAE-LEELREELEKLEKLLQLLPLYQELEAleaELAELPERLEELEERLEELRELEEE--- 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 775 hLQRNEVELEILRQR-NVELEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFR 853
Cdd:COG4717 165 -LEELEAELAELQEElEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEE 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 854 LLSLAkmgneesspggspRLSSGYTSSIHQDRDFSAKIQTTEFDLGQAGFTDSGEEREIVYLKEEVKSLRSQLKELNARH 933
Cdd:COG4717 244 RLKEA-------------RLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQAL 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 934 YEAMETADSHWVDLEQQYKEREEAQQAKEASLKQKIAQLQDCLREDSRAATEKIQQLEEGELS--LKSCLVRMTKEHRDL 1011
Cdd:COG4717 311 PALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAalLAEAGVEDEEELRAA 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 1012 LTENRTLQcsleslmaKMEKEAEHkmpLTEALENERRKTQALMDDLifakkvqqnTEDQLRQETDALRTQIFNIKKDYlh 1091
Cdd:COG4717 391 LEQAEEYQ--------ELKEELEE---LEEQLEELLGELEELLEAL---------DEEELEEELEELEEELEELEEEL-- 448
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 1092 ievtnGELKEEVGTLENKIRQMENQMRDSEerarcLEDELRTKDEQCQLLERKLGVmpegYSLADELHDSPAKRAKKDEV 1171
Cdd:COG4717 449 -----EELREELAELEAELEQLEEDGELAE-----LLQELEELKAELRELAEEWAA----LKLALELLEEAREEYREERL 514
|
...
gi 442618062 1172 PSL 1174
Cdd:COG4717 515 PPV 517
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
470-1125 |
1.03e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 470 QDLDKLQKEAEMYQKENERLQTEVQLMKQELDAAEKaaiSRAKKQAQIGELMQRIKELEEMQSSLEDEASELREQNELLE 549
Cdd:TIGR02168 295 NEISRLEQQKQILRERLANLERQLEELEAQLEELES---KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 550 FRILELEDDSDKMES----------TCEGHCQSLQDLLEQSAQRLEDRDKRCLQQLLQCVQQLDLDTMMPGDQNRTETPK 619
Cdd:TIGR02168 372 SRLEELEEQLETLRSkvaqlelqiaSLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEE 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 620 RHNSTHSHSHSHSHSQSHNHRIVATVQPYSNCAtptapptpsKRHCNQVSSWQSSSLSESGVFVECDLLSNPNPIGHPHL 699
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAEREL---------AQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGIL 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 700 QFYQERLE-----------QLEGKLLIYESSGETQAR----HLAQ-RLQR----ELQLEKDLKELADRVELLIEQNAQLE 759
Cdd:TIGR02168 523 GVLSELISvdegyeaaieaALGGRLQAVVVENLNAAKkaiaFLKQnELGRvtflPLDSIKGTEIQGNDREILKNIEGFLG 602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 760 EAKcEFEEAENDTRLHLQ----------RNEVELEILRQ-----RNVELE-----------FGKEALGAKYQDCRAEVLI 813
Cdd:TIGR02168 603 VAK-DLVKFDPKLRKALSyllggvlvvdDLDNALELAKKlrpgyRIVTLDgdlvrpggvitGGSAKTNSSILERRREIEE 681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 814 LREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKMGNEESspggsprlssgytssihQDRDFSAKIQT 893
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRK-----------------DLARLEAEVEQ 744
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 894 TEFDLGQagftdsgEEREIVYLKEEVKSLRSQLKELNarhyEAMETADSHWVDLEQQYKEREEAQQAKEASLKQKIAQLQ 973
Cdd:TIGR02168 745 LEERIAQ-------LSKELTELEAEIEELEERLEEAE----EELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT 813
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 974 DcLREDSRAATEKIQQLEEGELSLKSCLVRMTKEHRDL---LTENRTLQCSLESLMAKMEKEAEHkmplteaLENERRKT 1050
Cdd:TIGR02168 814 L-LNEEAANLRERLESLERRIAATERRLEDLEEQIEELsedIESLAAEIEELEELIEELESELEA-------LLNERASL 885
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442618062 1051 QALMDDLIFAKKVQQNTEDQLRQETDALRTQIfnikkdylhievtnGELKEEVGTLENKIRQMENQMRDSEERAR 1125
Cdd:TIGR02168 886 EEALALLRSELEELSEELRELESKRSELRREL--------------EELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| HlpA |
COG2825 |
Periplasmic chaperone for outer membrane proteins, Skp family [Cell wall/membrane/envelope ... |
474-549 |
1.38e-04 |
|
Periplasmic chaperone for outer membrane proteins, Skp family [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 442073 [Multi-domain] Cd Length: 171 Bit Score: 43.67 E-value: 1.38e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442618062 474 KLQKEAEMYQKENERLQTEVQLMKQELDaAEKAAISRAKKQAQIGELMQRIKELEEMQSSLEDEASelREQNELLE 549
Cdd:COG2825 47 KLEKEFKKRQAELQKLEKELQALQEKLQ-KEAATLSEEERQKKERELQKKQQELQRKQQEAQQDLQ--KRQQELLQ 119
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
723-933 |
1.69e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 723 QARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKcefeeaendTRLHLQRNEVELEILRQRNVELEFGKEALGA 802
Cdd:COG4913 239 RAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLR---------AALRLWFAQRRLELLEAELEELRAELARLEA 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 803 KYQDCRAEVLILREDLAAAETQ--------LEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKMGNEEsspggsprls 874
Cdd:COG4913 310 ELERLEARLDALREELDELEAQirgnggdrLEQLEREIERLERELEERERRRARLEALLAALGLPLPASA---------- 379
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 442618062 875 SGYTSSIHQDRDFSAKIQTTEFDLGQAGFTDSGEEREivyLKEEVKSLRSQLKELNARH 933
Cdd:COG4913 380 EEFAALRAEAAALLEALEEELEALEEALAEAEAALRD---LRRELRELEAEIASLERRK 435
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
915-1124 |
2.19e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 915 LKEEVKSLRSQLKELNARHYEAMETADSHWVDLEQQyKEREEAQQAKEASLKQKIAQLQDCLREDSRAATEKIQQLEEGE 994
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL-ERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 995 LSLKSCLVRMTKEHR-----------DLLTENRTLQcSLESLMAKMEKEAEHKMPLTEALENERRKTQALMDDLIFAKKV 1063
Cdd:COG4942 104 EELAELLRALYRLGRqpplalllspeDFLDAVRRLQ-YLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442618062 1064 QQNTEDQLRQETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENQMRDSEERA 1124
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
716-990 |
2.30e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 2.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 716 YESSGETQARHLAQRLQR---ELQLEKDLKELADRVELLieqNAQLEEAKCEFEEAENdtrlhlqrnevELEILRQRNVE 792
Cdd:COG3206 142 YTSPDPELAAAVANALAEaylEQNLELRREEARKALEFL---EEQLPELRKELEEAEA-----------ALEEFRQKNGL 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 793 LEFGKEALgakyqdcraevlILREDLAAAETQLEHLQAERKQARKELQDLRRslplllifrllSLAKMGNEESSPGGSPR 872
Cdd:COG3206 208 VDLSEEAK------------LLLQQLSELESQLAEARAELAEAEARLAALRA-----------QLGSGPDALPELLQSPV 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 873 LSsgytssihqdrDFSAKIQTTEFDLGQAGFTDSGEEREIVYLKEEVKSLRSQLKELNARHYEAMETADSHWVDLEQQYK 952
Cdd:COG3206 265 IQ-----------QLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQ 333
|
250 260 270
....*....|....*....|....*....|....*...
gi 442618062 953 EREEAQQAKEASLKQKIAQLQDcLREDSRAATEKIQQL 990
Cdd:COG3206 334 AQLAQLEARLAELPELEAELRR-LEREVEVARELYESL 370
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
733-973 |
3.62e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 3.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 733 RELQLEKdlKELADRVELLIEQNAQLEEAKCEFEEAEN--DTRLHLQRNEVELEILRQRNVELEFGKEALGA-----KYQ 805
Cdd:COG4913 214 REYMLEE--PDTFEAADALVEHFDDLERAHEALEDAREqiELLEPIRELAERYAAARERLAELEYLRAALRLwfaqrRLE 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 806 DCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSlplllifrllslakmgneesspggspRLSSGYtssihqDR 885
Cdd:COG4913 292 LLEAELEELRAELARLEAELERLEARLDALREELDELEAQ--------------------------IRGNGG------DR 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 886 --DFSAKIQTTEFDLGQAgftdsgeEREIVYLKEEVKSL-------RSQLKELNARHYEAMETADSHWVDLEQQY---KE 953
Cdd:COG4913 340 leQLEREIERLERELEER-------ERRRARLEALLAALglplpasAEEFAALRAEAAALLEALEEELEALEEALaeaEA 412
|
250 260
....*....|....*....|
gi 442618062 954 REEAQQAKEASLKQKIAQLQ 973
Cdd:COG4913 413 ALRDLRRELRELEAEIASLE 432
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
724-842 |
4.36e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 4.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 724 ARHLAQRLQREL-QLEKDLKELADRVELLIEQNAQLEEAKC------EFEEAENDT---RLHLQRNEVELEILRQRNVE- 792
Cdd:COG4913 608 NRAKLAALEAELaELEEELAEAEERLEALEAELDALQERREalqrlaEYSWDEIDVasaEREIAELEAELERLDASSDDl 687
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 442618062 793 --LEFGKEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDL 842
Cdd:COG4913 688 aaLEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAA 739
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
888-1092 |
6.06e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 6.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 888 SAKIQTTEFDLGQAGFTDSGEEREIVYLKEEVKSLRSQLKELNARHYEAMETADSHWVDLEQQYKEREEAQQAKEASLKQ 967
Cdd:COG4913 266 AARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLER 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 968 KIAQLQDCLREDSRAATEKIQQLEEGELSLksclvrmtKEHRDLLTENRtlqcsleslmakmeKEAEHkmpLTEALENER 1047
Cdd:COG4913 346 EIERLERELEERERRRARLEALLAALGLPL--------PASAEEFAALR--------------AEAAA---LLEALEEEL 400
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 442618062 1048 RKTQALMDDLIFAKKVQQNTEDQLRQETDALRTQIFNIKKDYLHI 1092
Cdd:COG4913 401 EALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLAL 445
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
470-591 |
1.33e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 470 QDLDKLQKEAEMYQKENERLQTEVQLMKQELDAAEKAA------ISRAKKQAQIGELMQRIKELEEMQS---SLEDEASE 540
Cdd:COG4913 617 AELAELEEELAEAEERLEALEAELDALQERREALQRLAeyswdeIDVASAEREIAELEAELERLDASSDdlaALEEQLEE 696
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 442618062 541 LREQNELLEFRILELEDDsdkmESTCEGHCQSLQDLLEQSAQRLEDRDKRC 591
Cdd:COG4913 697 LEAELEELEEELDELKGE----IGRLEKELEQAEEELDELQDRLEAAEDLA 743
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
950-1190 |
1.44e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 950 QYKEREEAQQAKEASLKQKIAQLQDCLREDSRAATEKIQQLEEGELSLksclVRMTKEHRDLLTENRTLQCSLESLMAKM 1029
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKI----GEIEKEIEQLEQEEEKLKERLEELEEDL 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 1030 EKeaehkmpLTEALENERRKTQALMDDLifakkvqqnteDQLRQETDALRTQIFNIKKDYLHIEVTN-----GELKEEVG 1104
Cdd:TIGR02169 747 SS-------LEQEIENVKSELKELEARI-----------EELEEDLHKLEEALNDLEARLSHSRIPEiqaelSKLEEEVS 808
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 1105 TLENKIRQMENQMRDSEERARCLEDELRTKDEQCQLLERKLGvmpegySLADELHDSPAKRAKKD-EVPSLQAASQGLGV 1183
Cdd:TIGR02169 809 RIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK------SIEKEIENLNGKKEELEeELEELEAALRDLES 882
|
....*..
gi 442618062 1184 ALLDLEG 1190
Cdd:TIGR02169 883 RLGDLKK 889
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
946-1145 |
1.56e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 946 DLEQQYKEREEAQQAKEASLKQKIAQLQDcLREDSRAATEKIQQLEEGELSLKSCLVRMTKEHRDLLTENRTLQCSLESL 1025
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAA-LERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 1026 MAKMEKEAEHkmPLTEALENERRKTQALMDDLIFAKKVQQNTE--DQLRQETDALRTQIFNIKKDYLHIEVTNGELKEEV 1103
Cdd:COG4942 110 LRALYRLGRQ--PPLALLLSPEDFLDAVRRLQYLKYLAPARREqaEELRADLAELAALRAELEAERAELEALLAELEEER 187
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 442618062 1104 GTLENKIRQMENQMRDSEERARCLEDELRTKDEQCQLLERKL 1145
Cdd:COG4942 188 AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALI 229
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
467-841 |
1.71e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 467 QTLQDLDKLQKEAEMYQKENERLQTEVQLMKQELDAA------EKAAISRAKKQAQIGELMQRIKELEEMQSSLEDEASE 540
Cdd:COG4717 92 ELQEELEELEEELEELEAELEELREELEKLEKLLQLLplyqelEALEAELAELPERLEELEERLEELRELEEELEELEAE 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 541 LREQNELLEfriLELEDDSDKMESTCEGHCQSLQDLlEQSAQRLEDRDKRCLQQLLQCVQQLDLDTMMPGDQNRTETPKR 620
Cdd:COG4717 172 LAELQEELE---ELLEQLSLATEEELQDLAEELEEL-QQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKE 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 621 HNSTHSHSHSHSHSQSHNHRIVATVQPYSNCAT----------------PTAPPTPSKRHCNQVSSWQSSSLSESGVFVE 684
Cdd:COG4717 248 ARLLLLIAAALLALLGLGGSLLSLILTIAGVLFlvlgllallflllareKASLGKEAEELQALPALEELEEEELEELLAA 327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 685 CDLLSNPNPIGHP-------HLQFYQERLEQLEGKLLI-------------YESSGETQARHLAQRLQRELQLEKDLKEL 744
Cdd:COG4717 328 LGLPPDLSPEELLelldrieELQELLREAEELEEELQLeeleqeiaallaeAGVEDEEELRAALEQAEEYQELKEELEEL 407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 745 ADRVELLIEQNAQLEEA--KCEFEEAENDTRLHLQRNEVELEILRQRNVELEFGKEALG---------AKYQDCRAEVLI 813
Cdd:COG4717 408 EEQLEELLGELEELLEAldEEELEEELEELEEELEELEEELEELREELAELEAELEQLEedgelaellQELEELKAELRE 487
|
410 420
....*....|....*....|....*...
gi 442618062 814 LREDLAAAETQLEHLQAERKQARKELQD 841
Cdd:COG4717 488 LAEEWAALKLALELLEEAREEYREERLP 515
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
703-1050 |
1.90e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 703 QERLEQLEGKLLIYESSGETQARHLAQrLQRELQ-LEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQRNEV 781
Cdd:TIGR02169 715 SRKIGEIEKEIEQLEQEEEKLKERLEE-LEEDLSsLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRI 793
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 782 eleilrqrnvelefgkEALGAKYQDCRAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKMG 861
Cdd:TIGR02169 794 ----------------PEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE 857
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 862 NeesspggsprlssgytsSIHQDRDFSAKIQTTEFDLGQAgftdsgeEREIVYLKEEVKSLRSQLKELNARHYEAMETAD 941
Cdd:TIGR02169 858 N-----------------LNGKKEELEEELEELEAALRDL-------ESRLGDLKKERDELEAQLRELERKIEELEAQIE 913
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 942 shwvdleqQYKEREEAQQAKEASLKQKIAQLQDCLREDS---------RAATEKIQQLEEGELSLKSCLVRMTKEHRDll 1012
Cdd:TIGR02169 914 --------KKRKRLSELKAKLEALEEELSEIEDPKGEDEeipeeelslEDVQAELQRVEEEIRALEPVNMLAIQEYEE-- 983
|
330 340 350
....*....|....*....|....*....|....*...
gi 442618062 1013 TENRtlQCSLESLMAKMEKEAEHKMPLTEALENERRKT 1050
Cdd:TIGR02169 984 VLKR--LDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
698-844 |
1.90e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 698 HLQFYQERLEQLEGKLliyessgeTQARHLAQRLQREL-QLEKDLKELADRVELLIEQ-----NAQLEEAKCEFEEAEND 771
Cdd:COG4913 282 RLWFAQRRLELLEAEL--------EELRAELARLEAELeRLEARLDALREELDELEAQirgngGDRLEQLEREIERLERE 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 772 TRLHLQRNEVELEILRQRNVELEFGKEALGAKYQDCRAEVL-------ILREDLAAAETQLEHLQAERKQARKELQDLRR 844
Cdd:COG4913 354 LEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEaleeeleALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
477-549 |
2.62e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.12 E-value: 2.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 477 KEAEMYQKENERLQTEVQLMKQELDAAEKAAISRAKKQAQI------GELMQRIKELEEMQSS---------LEDEASEL 541
Cdd:PRK00409 537 EEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQaikeakKEADEIIKELRQLQKGgyasvkaheLIEARKRL 616
|
....*...
gi 442618062 542 REQNELLE 549
Cdd:PRK00409 617 NKANEKKE 624
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
729-1051 |
2.95e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 2.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 729 QRLQRELQlEKDLKELADRVELLIEQNAQLEEAKCEFEEaendtrlHLQRNEVELEILRQRNVELEFGKEALGAKYQD-C 807
Cdd:TIGR02169 214 QALLKEKR-EYEGYELLKEKEALERQKEAIERQLASLEE-------ELEKLTEEISELEKRLEEIEQLLEELNKKIKDlG 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 808 RAEVLILREDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLAKMgneesspggsprlssgytssihqdRDF 887
Cdd:TIGR02169 286 EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI------------------------EEL 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 888 SAKIQTtefdlgQAGFTDSGEErEIVYLKEEVKSLRSQLKELNARHYEametadshWVDLEQQYKEREEAQQAKEASLKQ 967
Cdd:TIGR02169 342 EREIEE------ERKRRDKLTE-EYAELKEELEDLRAELEEVDKEFAE--------TRDELKDYREKLEKLKREINELKR 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 968 KIAQLQDCLREdsraATEKIQQLEEGELSLKSCLVRMTKEHRDLLTENRTLQCSLESLMAKMEKEAEHKMPLTE---ALE 1044
Cdd:TIGR02169 407 ELDRLQEELQR----LSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEeydRVE 482
|
....*..
gi 442618062 1045 NERRKTQ 1051
Cdd:TIGR02169 483 KELSKLQ 489
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
703-981 |
3.64e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 3.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 703 QERLEQLEGKLLIYE-SSGETQARHLAQRLQR-ELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQRN- 779
Cdd:TIGR02169 217 LKEKREYEGYELLKEkEALERQKEAIERQLASlEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKi 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 780 -EVELEILRQRNVELEFGKEALGAKYQDCRAEVLI--LREDLAAAETQLEHLQAERKQARKELQDLRrslplllIFRLLS 856
Cdd:TIGR02169 297 gELEAEIASLERSIAEKERELEDAEERLAKLEAEIdkLLAEIEELEREIEEERKRRDKLTEEYAELK-------EELEDL 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 857 LAKMGNEESSPGGSPRLSSGYTSSIHQDRDFSAKIQTTEFDLGQAGFTDSGEEREIvylKEEVKSLRSQLKELNARHYEA 936
Cdd:TIGR02169 370 RAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADL---NAAIAGIEAKINELEEEKEDK 446
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 442618062 937 METADSHWVDLEQQYKEREEAQQAKEAsLKQKIAQLQDCLREDSR 981
Cdd:TIGR02169 447 ALEIKKQEWKLEQLAADLSKYEQELYD-LKEEYDRVEKELSKLQR 490
|
|
| OmpH |
smart00935 |
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH ... |
474-549 |
3.65e-03 |
|
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.
Pssm-ID: 214922 [Multi-domain] Cd Length: 140 Bit Score: 39.10 E-value: 3.65e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442618062 474 KLQKEAEMYQKENERLQTEVQLMKQELDaAEKAAISRAKKQAQIGELMQRIKELEEMQSSLEDEASelREQNELLE 549
Cdd:smart00935 22 QLEKEFKKRQAELEKLEKELQKLKEKLQ-KDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQDLQ--KRQQEELQ 94
|
|
| FtsB |
COG2919 |
Cell division protein FtsB [Cell cycle control, cell division, chromosome partitioning]; |
465-507 |
3.83e-03 |
|
Cell division protein FtsB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442163 [Multi-domain] Cd Length: 96 Bit Score: 37.94 E-value: 3.83e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 442618062 465 IWQTLQDLDKLQKEAEMYQKENERLQTEVQLMKQELDAAEKAA 507
Cdd:COG2919 31 YRELRQEIAELEAENAKLKARNAELEAEVADLKDGPDYIEERA 73
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
911-1144 |
3.93e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.58 E-value: 3.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 911 EIVYLKEEVKSLRSQLKELNARHYEA---METADSHWVDLEQQYKEREEAQQAKEASLKQKIAQLQDClredsraaTEKI 987
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELtaeLQELEEKLEELRLEVSELEEEIEELQKELYALANEISRL--------EQQK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 988 QQLEEGELSLKSCLVRMTKEhrdLLTENRTLQCSLESLmAKMEKEAEHKMPLTEALENERRKTQALMDDLifakkvqQNT 1067
Cdd:TIGR02168 305 QILRERLANLERQLEELEAQ---LEELESKLDELAEEL-AELEEKLEELKEELESLEAELEELEAELEEL-------ESR 373
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442618062 1068 EDQLRQETDALRTQIFnikkdylhievtngELKEEVGTLENKIRQMENQMRDSEERARCLEDELRTKDEQCQLLERK 1144
Cdd:TIGR02168 374 LEELEEQLETLRSKVA--------------QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELK 436
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
699-842 |
4.18e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 4.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 699 LQFYQERLEQLEGKLLIYES------------SGETQARHLAQRL----QRELQLEKDLKELADRVELLIEQNAQLEEAK 762
Cdd:COG3206 177 LEFLEEQLPELRKELEEAEAaleefrqknglvDLSEEAKLLLQQLseleSQLAEARAELAEAEARLAALRAQLGSGPDAL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 763 CEFEEAENDTRLHLQRNEVELEI--LRQRN-------VELEFGKEALGAKYQDCRAEVLI-LREDLAAAETQLEHLQAER 832
Cdd:COG3206 257 PELLQSPVIQQLRAQLAELEAELaeLSARYtpnhpdvIALRAQIAALRAQLQQEAQRILAsLEAELEALQAREASLQAQL 336
|
170
....*....|
gi 442618062 833 KQARKELQDL 842
Cdd:COG3206 337 AQLEARLAEL 346
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
699-1081 |
4.22e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.64 E-value: 4.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 699 LQFYQERLEQLEGKLLIYESSGETQARHLAQRLQRELQLEKDLKELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQr 778
Cdd:pfam15921 453 IQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQ- 531
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 779 nevELEILRQ-----RNVELEFgkEALGAKYQDCRAEVLILREDLAAAeTQL--EH------LQAERKQARKELQDLRRS 845
Cdd:pfam15921 532 ---ELQHLKNegdhlRNVQTEC--EALKLQMAEKDKVIEILRQQIENM-TQLvgQHgrtagaMQVEKAQLEKEINDRRLE 605
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 846 LPLLLIFRLLSLAKMGNEESS------------PGGSPRLSSgyTSSIHQDRD-FSAKIQTT---------EFDLGQAGF 903
Cdd:pfam15921 606 LQEFKILKDKKDAKIRELEARvsdlelekvklvNAGSERLRA--VKDIKQERDqLLNEVKTSrnelnslseDYEVLKRNF 683
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 904 TDSGEEREIVY--LKEEVKSLRSQLkELNARHYEAMETADSHWVDLEQQYKEREEAQQAKEASLKQKIAQLQDCLredSR 981
Cdd:pfam15921 684 RNKSEEMETTTnkLKMQLKSAQSEL-EQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAM---TN 759
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 982 AATEKIQQLEEGElslksclvRMTKEHRDLLTENRTLQCSLESLMAKMEKEAEHKMPLTEALENERRKTQALMDdlIFAK 1061
Cdd:pfam15921 760 ANKEKHFLKEEKN--------KLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQD--IIQR 829
|
410 420
....*....|....*....|
gi 442618062 1062 KVQQNTEDQLRQETDALRTQ 1081
Cdd:pfam15921 830 QEQESVRLKLQHTLDVKELQ 849
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
766-1124 |
6.17e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.08 E-value: 6.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 766 EEAEN---DTRLHLQR-----NEVE--LEIL-RQRNV----------ELEFGKEALGAKYQDCRAEVLILREDLAAAETQ 824
Cdd:COG1196 175 EEAERkleATEENLERledilGELErqLEPLeRQAEKaeryrelkeeLKELEAELLLLKLRELEAELEELEAELEELEAE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 825 LEHLQAERKQARKELQDLRrslplllifrllslakmgneesspggsprlssgytSSIHQDRDFSAKIQTTEFDLGQAgft 904
Cdd:COG1196 255 LEELEAELAELEAELEELR-----------------------------------LELEELELELEEAQAEEYELLAE--- 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 905 DSGEEREIVYLKEEVKSLRSQLKELNArhyeametadshwvdleqqykEREEAQQaKEASLKQKIAQLQDclredsrAAT 984
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEE---------------------ELAELEE-ELEELEEELEELEE-------ELE 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 985 EKIQQLEEGELSLKSCLVRMTKEHRDLLTENRTLQCSLESLMAKMEKEAEHKMPLTEALENERRKTQALmDDLIFAKKVQ 1064
Cdd:COG1196 348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL-ERLEEELEEL 426
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 1065 QNTEDQLRQETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENQMRDSEERA 1124
Cdd:COG1196 427 EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
915-1137 |
7.26e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 7.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 915 LKEEVKSL---RSQLKELNARHYEAMETADSHWVDLEQQYKEREEAQQAKEASLKQkiaqlqdcLREDSRAATEKIQQLE 991
Cdd:COG4717 51 LEKEADELfkpQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEE--------LEAELEELREELEKLE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 992 EgelslksclvrmTKEHRDLLTENRTLQCSLESLMAKMEKEAEHKMPLTEALENERRKTQALmddlifaKKVQQNTEDQL 1071
Cdd:COG4717 123 K------------LLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAEL-------AELQEELEELL 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442618062 1072 RQETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENQMRDSEERARCLEDELRTKDEQ 1137
Cdd:COG4717 184 EQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEAR 249
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
467-585 |
8.07e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.43 E-value: 8.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 467 QTLQDLDKLQKEAEMYQKENERLQtevQLMKQELDAAEKAAISRAKKQAQIGELMQRIKELEEMQSSLEDEASELREQNE 546
Cdd:TIGR02168 821 NLRERLESLERRIAATERRLEDLE---EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE 897
|
90 100 110
....*....|....*....|....*....|....*....
gi 442618062 547 LLEFRILELEDDSDKMestcEGHCQSLQDLLEQSAQRLE 585
Cdd:TIGR02168 898 ELSEELRELESKRSEL----RRELEELREKLAQLELRLE 932
|
|
| BLOC1_2 |
pfam10046 |
Biogenesis of lysosome-related organelles complex-1 subunit 2; Members of this family of ... |
471-552 |
8.77e-03 |
|
Biogenesis of lysosome-related organelles complex-1 subunit 2; Members of this family of proteins play a role in cellular proliferation, as well as in the biogenesis of specialized organelles of the endosomal-lysosomal system.
Pssm-ID: 462951 [Multi-domain] Cd Length: 96 Bit Score: 36.80 E-value: 8.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 471 DLDKLQKEAEMYQKENERLQTEVQLMKQELDAAEKAAISRAKKQAQIGELMQRIKELEEMQSSLEDEASELREQNELLEF 550
Cdd:pfam10046 14 ELEATVEDYKLLEKMNEATSLKYKDMKDVAASLEKELEELNQKYEELQPYLQQIDQIEEQVTKLEETVYELDEYSKRLES 93
|
..
gi 442618062 551 RI 552
Cdd:pfam10046 94 KF 95
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
922-1145 |
8.80e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 40.31 E-value: 8.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 922 LRSQLKEL-----NARHY-----EAMETADSHWVDLEQQYKEREEAQQAKEASLKQKIAQLQDCL----------REDSR 981
Cdd:COG1196 198 LERQLEPLerqaeKAERYrelkeELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELaeleaeleelRLELE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 982 AATEKIQQLEEGELSLKSCLVRMTKEHRDLLTENRTLQCSLESLMAKMEKEAEHKMPLTEALENERRKTQALMDDLIFAK 1061
Cdd:COG1196 278 ELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 1062 KVQQNTEDQLR---QETDALRTQIFNIKKDYLHIEVTNGELKEEVGTLENKIRQMENQMRDSEERARCLEDELRTKDEQC 1138
Cdd:COG1196 358 AELAEAEEALLeaeAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE 437
|
....*..
gi 442618062 1139 QLLERKL 1145
Cdd:COG1196 438 EEEEEAL 444
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
149-301 |
9.79e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.44 E-value: 9.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442618062 149 RIKRKLQENMDTIQKLNALTEQLRLEVNELKssliTERGAVRALRAQNDADSRRWKSEVKKLQHTLEMAK-KSNGIKKAI 227
Cdd:TIGR02169 333 KLLAEIEELEREIEEERKRRDKLTEEYAELK----EELEDLRAELEEVDKEFAETRDELKDYREKLEKLKrEINELKREL 408
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 442618062 228 ESGPESSGAHVTADGLINYEIQRLTNEIAVLKEanrnkEEKTQLEEIKTKERNIGQLRKDLLALQSPKKLKQNE 301
Cdd:TIGR02169 409 DRLQEELQRLSEELADLNAAIAGIEAKINELEE-----EKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEE 477
|
|
| |
