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Conserved domains on  [gi|238478437|ref|NP_001154325|]
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Adenine nucleotide alpha hydrolases-like superfamily protein [Arabidopsis thaliana]

Protein Classification

universal stress protein( domain architecture ID 19229820)

universal stress protein (USP) enhances the rate of cell survival during prolonged exposure to stress agents

CATH:  3.40.50.620
Gene Ontology:  GO:0005524|GO:0050896
PubMed:  23745136|12012333|36902153
SCOP:  4003850

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
USP_At3g01520-like cd23659
universal stress protein At3g01520 and similar proteins; This subfamily includes plant and ...
 38-193 8.07e-41

universal stress protein At3g01520 and similar proteins; This subfamily includes plant and fungal proteins of unknown function, including Arabidopsis thaliana At3g01520. A. thaliana contains 44 USP domain-containing proteins; the USP domain is found either in a small protein with unknown physiological function or as an N-terminal portion of a multi-domain protein, usually a protein kinase. The gene At3g01520 of Arabidopsis thaliana encodes a 175-residue universal stress protein (USP)-like protein which is widely found in the genomes of bacteria, as well as fungi, protozoa, and plants. The bound AMP and conservation of residues in the ATP-binding loop suggest that the protein At3g01520 belongs to the ATP-binding USP subfamily. Universal stress proteins (USPs) are small cytoplasmic bacterial proteins whose expression is enhanced when the cell is exposed to stress agents. USP enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.


:

Pssm-ID: 467505  Cd Length: 143  Bit Score: 136.98  E-value: 8.07e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238478437  38 RKIGIAVDLSDESAYAVQWAVQNYLRSGDAVVLLHVQPTSVLYGADWGAMD--LSPQWDPNNEESQRKLEddfdivtnkK 115
Cdd:cd23659    1 RKVLIAVDGSEESEYALEWALENLHRPGDEVVLLHVIEPPSLPAASLGSGSeeWEALEEEAREKAEKLLE---------K 71

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 238478437 116 ASDVAQPlvEADIPFKIHIVKDHDmKERLCLEVERLGLSTLIMGSRGFGATKRSSkgrLGSVSDYSVHHCACPVVVVR 193
Cdd:cd23659   72 YEKKLKE--EKGIKVKVEVVAGDP-GEVICKAAEELKADLIVMGSRGLGALKRTL---LGSVSDYVVHHSPCPVLVVR 143
 
Name Accession Description Interval E-value
USP_At3g01520-like cd23659
universal stress protein At3g01520 and similar proteins; This subfamily includes plant and ...
 38-193 8.07e-41

universal stress protein At3g01520 and similar proteins; This subfamily includes plant and fungal proteins of unknown function, including Arabidopsis thaliana At3g01520. A. thaliana contains 44 USP domain-containing proteins; the USP domain is found either in a small protein with unknown physiological function or as an N-terminal portion of a multi-domain protein, usually a protein kinase. The gene At3g01520 of Arabidopsis thaliana encodes a 175-residue universal stress protein (USP)-like protein which is widely found in the genomes of bacteria, as well as fungi, protozoa, and plants. The bound AMP and conservation of residues in the ATP-binding loop suggest that the protein At3g01520 belongs to the ATP-binding USP subfamily. Universal stress proteins (USPs) are small cytoplasmic bacterial proteins whose expression is enhanced when the cell is exposed to stress agents. USP enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.


Pssm-ID: 467505  Cd Length: 143  Bit Score: 136.98  E-value: 8.07e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238478437  38 RKIGIAVDLSDESAYAVQWAVQNYLRSGDAVVLLHVQPTSVLYGADWGAMD--LSPQWDPNNEESQRKLEddfdivtnkK 115
Cdd:cd23659    1 RKVLIAVDGSEESEYALEWALENLHRPGDEVVLLHVIEPPSLPAASLGSGSeeWEALEEEAREKAEKLLE---------K 71

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 238478437 116 ASDVAQPlvEADIPFKIHIVKDHDmKERLCLEVERLGLSTLIMGSRGFGATKRSSkgrLGSVSDYSVHHCACPVVVVR 193
Cdd:cd23659   72 YEKKLKE--EKGIKVKVEVVAGDP-GEVICKAAEELKADLIVMGSRGLGALKRTL---LGSVSDYVVHHSPCPVLVVR 143
Usp pfam00582
Universal stress protein family; The universal stress protein UspA is a small cytoplasmic ...
 40-193 7.50e-26

Universal stress protein family; The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.


Pssm-ID: 425765 [Multi-domain]  Cd Length: 137  Bit Score: 98.25  E-value: 7.50e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238478437   40 IGIAVDLSDESAYAVQWAVQNYLRSGDAVVLLHVQPTSVLYGADWGAMDLSPQWDPNNEESQRKLEddfdivtnkkasdv 119
Cdd:pfam00582   1 ILVAVDGSEESKRALEWAAELAKARGAELILLHVIDPPPSGAASLADESAEEEELELELAEAEALA-------------- 66

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 238478437  120 AQPLVEADIPFKIHIVKDHDMKERLCLEVERLGLSTLIMGSRGFGATKRsskGRLGSVSDYSVHHCACPVVVVR 193
Cdd:pfam00582  67 AAAAAEAGGVKVEVVVVVGDPAEEILEVAEEEDADLIVMGSRGRSGLSR---LLLGSVAEYVLRHAPCPVLVVR 137
UspA COG0589
Nucleotide-binding universal stress protein, UspA family [Signal transduction mechanisms];
38-192 6.55e-18

Nucleotide-binding universal stress protein, UspA family [Signal transduction mechanisms];


Pssm-ID: 440354  Cd Length: 136  Bit Score: 77.27  E-value: 6.55e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238478437  38 RKIGIAVDLSDESAYAVQWAVQNYLRSGDAVVLLHVQPTSVLYGADWGAMDlspqwDPNNEESQRKLEddfdivtnkkas 117
Cdd:COG0589    3 KRILVPTDGSEEAERALEYAAELAKALGAELHLLHVVDPPPSAAAGPEELE-----EELREEAEEALE------------ 65

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 238478437 118 DVAQPLVEADIPFKIHIVKDHDmKERLCLEVERLGLSTLIMGSRGfgatkRSSKGR--LGSVSDYSVHHCACPVVVV 192
Cdd:COG0589   66 EAAERLEEAGVEVETVVREGDP-AEAILEAAEELDADLIVMGSRG-----RSGLRRllLGSVAERVLRHAPCPVLVV 136
 
Name Accession Description Interval E-value
USP_At3g01520-like cd23659
universal stress protein At3g01520 and similar proteins; This subfamily includes plant and ...
 38-193 8.07e-41

universal stress protein At3g01520 and similar proteins; This subfamily includes plant and fungal proteins of unknown function, including Arabidopsis thaliana At3g01520. A. thaliana contains 44 USP domain-containing proteins; the USP domain is found either in a small protein with unknown physiological function or as an N-terminal portion of a multi-domain protein, usually a protein kinase. The gene At3g01520 of Arabidopsis thaliana encodes a 175-residue universal stress protein (USP)-like protein which is widely found in the genomes of bacteria, as well as fungi, protozoa, and plants. The bound AMP and conservation of residues in the ATP-binding loop suggest that the protein At3g01520 belongs to the ATP-binding USP subfamily. Universal stress proteins (USPs) are small cytoplasmic bacterial proteins whose expression is enhanced when the cell is exposed to stress agents. USP enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.


Pssm-ID: 467505  Cd Length: 143  Bit Score: 136.98  E-value: 8.07e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238478437  38 RKIGIAVDLSDESAYAVQWAVQNYLRSGDAVVLLHVQPTSVLYGADWGAMD--LSPQWDPNNEESQRKLEddfdivtnkK 115
Cdd:cd23659    1 RKVLIAVDGSEESEYALEWALENLHRPGDEVVLLHVIEPPSLPAASLGSGSeeWEALEEEAREKAEKLLE---------K 71

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 238478437 116 ASDVAQPlvEADIPFKIHIVKDHDmKERLCLEVERLGLSTLIMGSRGFGATKRSSkgrLGSVSDYSVHHCACPVVVVR 193
Cdd:cd23659   72 YEKKLKE--EKGIKVKVEVVAGDP-GEVICKAAEELKADLIVMGSRGLGALKRTL---LGSVSDYVVHHSPCPVLVVR 143
Usp pfam00582
Universal stress protein family; The universal stress protein UspA is a small cytoplasmic ...
 40-193 7.50e-26

Universal stress protein family; The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.


Pssm-ID: 425765 [Multi-domain]  Cd Length: 137  Bit Score: 98.25  E-value: 7.50e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238478437   40 IGIAVDLSDESAYAVQWAVQNYLRSGDAVVLLHVQPTSVLYGADWGAMDLSPQWDPNNEESQRKLEddfdivtnkkasdv 119
Cdd:pfam00582   1 ILVAVDGSEESKRALEWAAELAKARGAELILLHVIDPPPSGAASLADESAEEEELELELAEAEALA-------------- 66

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 238478437  120 AQPLVEADIPFKIHIVKDHDMKERLCLEVERLGLSTLIMGSRGFGATKRsskGRLGSVSDYSVHHCACPVVVVR 193
Cdd:pfam00582  67 AAAAAEAGGVKVEVVVVVGDPAEEILEVAEEEDADLIVMGSRGRSGLSR---LLLGSVAEYVLRHAPCPVLVVR 137
USP-like cd00293
universal stress protein (USP) and similar proteins; The universal stress protein (USP) is a ...
 39-192 2.02e-21

universal stress protein (USP) and similar proteins; The universal stress protein (USP) is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. USP enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, although USP lacks ATP-binding activity.


Pssm-ID: 467483 [Multi-domain]  Cd Length: 135  Bit Score: 86.25  E-value: 2.02e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238478437  39 KIGIAVDLSDESAYAVQWAVQNYLRSGDAVVLLHVQPTSVLYGADWGamdLSPQWDPNNEESQRKLEddfdivtnkkasD 118
Cdd:cd00293    1 KILVAVDGSEESERALEWALELAKRPGAELTLLHVVDPPPSSSLSGG---LEELADELKEEAEELLE------------E 65

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 238478437 119 VAQPLVEADIPFKIHIVKDHDmKERLCLEVERLGLSTLIMGSRGFGATKRSSkgrLGSVSDYSVHHCACPVVVV 192
Cdd:cd00293   66 AKKLAEEAGVEVETIVVEGDP-AEAILEEAKELGADLIVMGSRGRSGLKRLL---LGSVSEYVLRHAPCPVLVV 135
UspA COG0589
Nucleotide-binding universal stress protein, UspA family [Signal transduction mechanisms];
38-192 6.55e-18

Nucleotide-binding universal stress protein, UspA family [Signal transduction mechanisms];


Pssm-ID: 440354  Cd Length: 136  Bit Score: 77.27  E-value: 6.55e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238478437  38 RKIGIAVDLSDESAYAVQWAVQNYLRSGDAVVLLHVQPTSVLYGADWGAMDlspqwDPNNEESQRKLEddfdivtnkkas 117
Cdd:COG0589    3 KRILVPTDGSEEAERALEYAAELAKALGAELHLLHVVDPPPSAAAGPEELE-----EELREEAEEALE------------ 65

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 238478437 118 DVAQPLVEADIPFKIHIVKDHDmKERLCLEVERLGLSTLIMGSRGfgatkRSSKGR--LGSVSDYSVHHCACPVVVV 192
Cdd:COG0589   66 EAAERLEEAGVEVETVVREGDP-AEAILEAAEELDADLIVMGSRG-----RSGLRRllLGSVAERVLRHAPCPVLVV 136
USP_Rv2623_repeat1 cd23944
universal stress protein Rv2623 and similar proteins, USP repeat 1; Mycobacterium tuberculosis ...
 40-193 8.13e-11

universal stress protein Rv2623 and similar proteins, USP repeat 1; Mycobacterium tuberculosis universal stress protein Rv2623 regulates mycobacterial growth in vitro and in vivo and is required for the entry of the tubercle bacillus into the chronic phase of infection in the host. In addition Rv2623 binds ATP and the growth-regulatory attribute of this USP is dependent on its ATP-binding activity. Rv2623 is thought to function as an ATP-dependent signaling intermediate in a pathway that promotes persistent infection. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, although Usp lacks ATP-binding activity.


Pssm-ID: 467509  Cd Length: 140  Bit Score: 58.18  E-value: 8.13e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238478437  40 IGIAVDLSDESAYAVQWAVQNYLRSGDAVVLLHVQPTSVLYGADWGAMDLSPQWDpnNEESQRKLEDDFDIVTNKkASDV 119
Cdd:cd23944    2 IIVGVDGSPASDAAVRWAAREAQLRQIPLTLVHVVPPVVVSWPEGPRPAEVLDWQ--QDEARQVIEQARKVAEEA-SGEG 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238478437 120 AQPLVEADIPFK------IHIVKDHDMkerlcleverlglstLIMGSRGFGATKRSSkgrLGSVSDYSVHHCACPVVVVR 193
Cdd:cd23944   79 PPVKVETEIVPGspvptlVEASRDATM---------------VVVGSRGIGALAGLL---LGSVSTSLVRHAHCPVAVIH 140
USP_STK_Ubox_N cd01989
N-terminal USP domain of serine threonine kinases (STK) and U-box domain proteins; This model ...
 39-192 1.72e-10

N-terminal USP domain of serine threonine kinases (STK) and U-box domain proteins; This model represents the N-terminal domain found in some plant serine threonine kinases (STK, EC 2.7.11.-) and U-box domain-containing proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. They play a role in the regulation of cell proliferation, programmed cell death (apoptosis), cell differentiation, and embryonic development. These enzymes belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. U-box domain-containing proteins function as E3 ubiquitin ligases (EC 2.3.2.27), mediating the ubiquitination of target proteins by bringing the ubiquitin-charged E2 ubiquitin-conjugating enzyme and the acceptor protein together to enable the direct transfer of ubiquitin. The N-terminal domain of these proteins is homologous to the universal stress protein (USP) family which has an ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.


Pssm-ID: 467493  Cd Length: 154  Bit Score: 57.68  E-value: 1.72e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238478437  39 KIGIAVD-LSDESAYAVQWAVQNYLRSGDAVVLLHVQPTSVlYGADWGAMDLSPQWDPNNEESQRKLEDDfdivtnkKAS 117
Cdd:cd01989    1 KVAVAVDgDDKKSKSALKWALDNLAPRGAKIVLVHVHPPVT-MIPTPSGKVPPIQLREEEVSAYRKQERE-------KTE 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238478437 118 DVAQPLVEADIPFKIH----IVKDHDMKERLCLEVERLGLSTLIMGSRGFGATKRSSKGRlgSVSDYsVHHCA---CPVV 190
Cdd:cd01989   73 KMLLPYLDMCSRKKVQaekvVIESDDVAKGIVELISQHGITKLVMGAASDNHFSMKLKKS--DVASS-VMKAApdfCTVW 149


                 ..
gi 238478437 191 VV 192
Cdd:cd01989  150 VV 151
USP_Rv2623_repeat2 cd23661
universal stress protein Rv2623 and similar proteins, USP repeat 2; Mycobacterium tuberculosis ...
 42-193 3.43e-03

universal stress protein Rv2623 and similar proteins, USP repeat 2; Mycobacterium tuberculosis universal stress protein Rv2623 regulates mycobacterial growth in vitro and in vivo and is required for the entry of the tubercle bacillus into the chronic phase of infection in the host. In addition, Rv2623 binds ATP and the growth-regulatory attribute of this USP is dependent on its ATP-binding activity. Rv2623 is thought to function as an ATP-dependent signaling intermediate in a pathway that promotes persistent infection. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, although Usp lacks ATP-binding activity.


Pssm-ID: 467507 [Multi-domain]  Cd Length: 133  Bit Score: 36.72  E-value: 3.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238478437  42 IAVDLSDESAYAVQWAVQNYLRSGDAVVLLHVqptsvlygadWGAMDLSPQWDPNNEESQRKLEDDFdivtnkkASDVAq 121
Cdd:cd23661    4 VGVDGSPASELATEIAFDEASRRGVDLVALHA----------WSDMGPGGFLGIDWRESEQDQERML-------AERLA- 65

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 238478437 122 PLVEADIPFKIHIVKDHDMKERLCLEVERLGlSTLIMGSRGFGATKrsskGRL-GSVSDYSVHHCACPVVVVR 193
Cdd:cd23661   66 GWQERYPDVHVHKVVVRDRPARVLLEASERA-QLVVVGSHGRGGFA----GMLlGSVSRAVLHSAPCPVIVVR 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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