|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
175-363 |
1.43e-35 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 135.13 E-value: 1.43e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 175 IALEPNRPEVYEQRAEILSPLGRISEALLDLTKAIQLQPS-ARLYRHRGTLLFISEDYMAAMEDFQQSLELKKNQPIAML 253
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 254 YKGLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIENAMESFQKALLLDQNHIQSLQLRGMMLYHHGSL 333
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190
....*....|....*....|....*....|
gi 194578961 334 QEAIGNFKRCLQLEPYNEVCQYMKGLSHVA 363
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALAL 190
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
136-323 |
5.87e-30 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 118.96 E-value: 5.87e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 136 LQGDPELVSAIYGRGIAYGKksLQDIKNAdLALYElsRVIALEPNRPEVYEQRAEILSPLGRISEALLDLTKAIQLQP-S 214
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRR--LGRYEEA-IEDYE--KALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPdD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 215 ARLYRHRGTLLFISEDYMAAMEDFQQSLELKKNQPIAMLYKGLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYR 294
Cdd:COG0457 76 AEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALE 155
|
170 180
....*....|....*....|....*....
gi 194578961 295 ELGDIENAMESFQKALLLDQNHIQSLQLR 323
Cdd:COG0457 156 KLGRYEEALELLEKLEAAALAALLAAALG 184
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
209-373 |
6.98e-30 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 118.96 E-value: 6.98e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 209 IQLQPS-ARLYRHRGTLLFISEDYMAAMEDFQQSLELKKNQPIAMLYKGLTFFHRGLLKEAIEVFKEALKLKSDFIDAYK 287
Cdd:COG0457 1 LELDPDdAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 288 SLGQAYRELGDIENAMESFQKALLLDQNHIQSLQLRGMMLYHHGSLQEAIGNFKRCLQLEPYNEVCQYMKGLSHVAMGQF 367
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
....*.
gi 194578961 368 YEGIKA 373
Cdd:COG0457 161 EEALEL 166
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
112-352 |
3.30e-28 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 114.83 E-value: 3.30e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 112 ELAIGYVLIGNglYDEAIKHFSLLLQGDPELVSAIYGRGIAYGKKslqdiKNADLALYELSRVIALEPNRPEVYEQRAEI 191
Cdd:COG2956 13 FKGLNYLLNGQ--PDKAIDLLEEALELDPETVEAHLALGNLYRRR-----GEYDRAIRIHQKLLERDPDRAEALLELAQD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 192 LSPLGRISEALLDLTKAIQLQP-SARLYRHRGTLLFISEDYMAAMEDFQQSLELKKNQPIAMLYKGLTFFHRGLLKEAIE 270
Cdd:COG2956 86 YLKAGLLDRAEELLEKLLELDPdDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 271 VFKEALKLKSDFIDAYKSLGQAYRELGDIENAMESFQKALLLDQNHIQSLQLRGMMLYHHGSLQEAIGNFKRCLQLEPYN 350
Cdd:COG2956 166 ALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD 245
|
..
gi 194578961 351 EV 352
Cdd:COG2956 246 DL 247
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
152-345 |
5.88e-25 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 103.84 E-value: 5.88e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 152 AYGKKSLQDIKNADLALYELSRVIALEPNRPEVYEQRAEILSPLGRISEALLDLTKAIQLQP-SARLYRHRGTLLFISED 230
Cdd:COG4785 43 DLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPdLAEAYNNRGLAYLLLGD 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 231 YMAAMEDFQQSLELKKNQPIAMLYKGLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDienamesfQKAL 310
Cdd:COG4785 123 YDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDP--------EKAL 194
|
170 180 190
....*....|....*....|....*....|....*
gi 194578961 311 LLDQNHIQSLQLrgmmlyHHGSLQEAIGNFKRCLQ 345
Cdd:COG4785 195 ALLLEDWATAYL------LQGDTEEARELFKLALA 223
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
103-337 |
7.45e-25 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 105.20 E-value: 7.45e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 103 AVDNQNTNEELAIGYVLIGNGLYDEAIKHFSLLLQGDPELVSAIYGRGIAYgkkslQDIKNADLALYELSRVIALEPNRP 182
Cdd:COG2956 36 ELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDY-----LKAGLLDRAEELLEKLLELDPDDA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 183 EVYEQRAEILSPLGRISEALLDLTKAIQLQP-SARLYRHRGTLLFISEDYMAAMEDFQQSLELKKNQPIAMLYKGLTFFH 261
Cdd:COG2956 111 EALRLLAEIYEQEGDWEKAIEVLERLLKLGPeNAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLE 190
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 194578961 262 RGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIENAMESFQKALLLDQNHIQSLQLrGMMLYHHGSLQEAI 337
Cdd:COG2956 191 QGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL-ADLLERKEGLEAAL 265
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
242-382 |
7.79e-25 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 104.32 E-value: 7.79e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 242 LELKKNQPIAMLYKGLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIENAMESFQKALLLDQNHIQSLQ 321
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 194578961 322 LRGMMLYHHGSLQEAIGNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDP 382
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP 141
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
215-348 |
1.25e-24 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 100.27 E-value: 1.25e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 215 ARLYRHRGTLLFISEDYMAAMEDFQQSLELKKNQPIAMLYKGLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYR 294
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 194578961 295 ELGDIENAMESFQKALLLDQNHIQSLQLRGMMLYHHGSLQEAIGNFKRCLQLEP 348
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
145-382 |
2.71e-24 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 108.54 E-value: 2.71e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 145 AIYGRGIAYGKKSLQDIKNADLALYELSRVIALEPNRPEVYEQRAEILSPLGRISEALLDLTKAIQLQPSARLYRHRGTL 224
Cdd:COG3914 8 ALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 225 LFISEDYMAAMEDFQQSLELKKNQPIAMLYKGLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIENAME 304
Cdd:COG3914 88 LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 305 SFQKALLLDQNHIQSLQLRGMMLYHHGSLQEAIGNFKRCLQLEPYNEV--CQYMKGLSHVAMGQFYEGIKAQTKVMLNDP 382
Cdd:COG3914 168 ALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADahSNLLFALRQACDWEVYDRFEELLAALARGP 247
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
123-414 |
2.93e-24 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 108.54 E-value: 2.93e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 123 GLYDEAIKHFSLLLQGDPELVSAIYGRGIAYGKKSLQDIKNADLALY----ELSRVIALEPNRPEVYEQRAEILSPLGRI 198
Cdd:COG3914 15 AALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLAlaagEAAAAAAALLLLAALLELAALLLQALGRY 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 199 SEALLDLTKAIQLQP-SARLYRHRGTLLFISEDYMAAMEDFQQSLELKKNQPIAMLYKGLTFFHRGLLKEAIEVFKEALK 277
Cdd:COG3914 95 EEALALYRRALALNPdNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALE 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 278 LKSDFIDAYKSLGQAYRELGDIENAMESFQKALLLDQNHIQSLQLRGMMLYHHGSLQEAIGNFKRCLQLEPYNEVC---- 353
Cdd:COG3914 175 LDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELspfa 254
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 354 -QYMKGLS-------HVAMGQFYE-GIKAQTKVMLNDPLLGQKasseyLKVKYLreySRYLHSHldvPVA 414
Cdd:COG3914 255 lLYLPDDDpaellalARAWAQLVAaAAAPELPPPPNPRDPDRK-----LRIGYV---SADFRRH---AVG 313
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
183-316 |
1.97e-21 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 91.02 E-value: 1.97e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 183 EVYEQRAEILSPLGRISEALLDLTKAIQLQP-SARLYRHRGTLLFISEDYMAAMEDFQQSLELKKNQPIAMLYKGLTFFH 261
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPdNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 194578961 262 RGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIENAMESFQKALLLDQNH 316
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
196-382 |
6.82e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 90.56 E-value: 6.82e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 196 GRISEALLDLTKAIQLQPS--------ARLYRHRGtllfiseDYMAAMEDFQQSLELKKNQPIAMLYKGLTFFHRGLLKE 267
Cdd:COG2956 22 GQPDKAIDLLEEALELDPEtveahlalGNLYRRRG-------EYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 268 AIEVFKEALKLKSDFIDAYKSLGQAYRELGDIENAMESFQKALLLDQNHIQSLQLRGMMLYHHGSLQEAIGNFKRCLQLE 347
Cdd:COG2956 95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLD 174
|
170 180 190
....*....|....*....|....*....|....*
gi 194578961 348 PYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDP 382
Cdd:COG2956 175 PDCARALLLLAELYLEQGDYEEAIAALERALEQDP 209
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
137-310 |
2.38e-19 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 87.66 E-value: 2.38e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 137 QGDPELVSAIYGRGIAYGKKslqdiKNADLALYELSRVIALEPNRPEVYEQRAEILSPLGRISEALLDLTKAIQLQPS-A 215
Cdd:COG4785 67 LALPDLAQLYYERGVAYDSL-----GDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDyA 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 216 RLYRHRGTLLFISEDYMAAMEDFQQSLELKKNQPIAMLYKGLTfFHRGLLKEAIEVFKEAlklksdfidayksLGQAYRE 295
Cdd:COG4785 142 YAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLA-ERKLDPEKALALLLED-------------WATAYLL 207
|
170
....*....|....*
gi 194578961 296 LGDIENAMESFQKAL 310
Cdd:COG4785 208 QGDTEEARELFKLAL 222
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
158-373 |
4.64e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 91.98 E-value: 4.64e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 158 LQDIKNADLALYELSRVIALEPNRPEVYEQRAEILSPLGRISEALLDLTKAIQLQPSARLYRHRGTLLFISEDYMAAMED 237
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 238 FQQSLELKKNQpiamlykgltffhrGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIENAMESFQKALLLDQNHI 317
Cdd:COG3914 81 LELAALLLQAL--------------GRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFA 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 194578961 318 QSLQLRGMMLYHHGSLQEAIGNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKA 373
Cdd:COG3914 147 EAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAA 202
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
88-386 |
6.29e-19 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 92.07 E-value: 6.29e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 88 LNQAKLFVEQrrfPFAVDNQNTNEELAIGYVLIGNGLYDEAIKHFSLLLQGDPELVSAIYGRGiaygkKSLQDIKNADLA 167
Cdd:TIGR02917 141 LELAQKSYEQ---ALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKG-----DLLLSLGNIELA 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 168 LYELSRVIALEPNRPEVYEQRAEILSPLGRISEALLDLTKAIQL---QPSARLYRhrGTLLFISEDYMAAMEDFQQSLEL 244
Cdd:TIGR02917 213 LAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKapnSPLAHYLK--ALVDFQKKNYEDARETLQDALKS 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 245 KKNQPIAMLYKGLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIENAMESFQKALLLDQNHIQSLQLRG 324
Cdd:TIGR02917 291 APEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLG 370
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 194578961 325 MMLYHHGSLQEAIGNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPLLGQ 386
Cdd:TIGR02917 371 EAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGR 432
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
233-348 |
6.71e-19 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 83.52 E-value: 6.71e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 233 AAMEDFQQSLELKKNQPIAMLYKGLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIENAMESFQKALLL 312
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*.
gi 194578961 313 DQNHIQSLQLRGMMLYHHGSLQEAIGNFKRCLQLEP 348
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
221-382 |
1.01e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 87.09 E-value: 1.01e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 221 RGTLLFISEDYMAAMEDFQQSLELKKNQPIAMLYKGLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIE 300
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 301 NAMESFQKALLLDQNHIQSLQLRGMMLYHHGSLQEAIGNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLN 380
Cdd:COG2956 94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173
|
..
gi 194578961 381 DP 382
Cdd:COG2956 174 DP 175
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
83-315 |
1.14e-18 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 86.21 E-value: 1.14e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 83 NAEKILNQAKLFVEQRRFPFAVDNQNT----NEELAIGYVLIGN-----GLYDEAIKHFSLLLQGDPELVSAIYGRGIAY 153
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKalelDPDDAEALYNLGLaylrlGRYEEALADYEQALELDPDDAEALNNLGLAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 154 gkkslQDIKNADLALYELSRVIALEPNRPEVYEQRAEILSPLGRISEALLDLTKAIQLQPS-ARLYRHRGTLLFISEDYM 232
Cdd:COG0457 87 -----QALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDdADALYNLGIALEKLGRYE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 233 AAMEDFQQSLELKKNQPIAMLYKGLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIENAMESFQKALLL 312
Cdd:COG0457 162 EALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALY 241
|
...
gi 194578961 313 DQN 315
Cdd:COG0457 242 QYR 244
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
82-405 |
1.94e-18 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 90.53 E-value: 1.94e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 82 LNAEKILNQAklfvEQRRFPfavDNQnTNEELAIGYvlIGNGLYDEAIKHFSLLLQGDPELVSAIYG-RGIAY-GKKSLQ 159
Cdd:TIGR02917 73 AAAEKELRKA----LSLGYP---KNQ-VLPLLARAY--LLQGKFQQVLDELPGKTLLDDEGAAELLAlRGLAYlGLGQLE 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 160 DIKNAdlalYELSRVIAlePNRPEVYEQRAEILSPLGRISEALLDLTKAIQLQPSAR-LYRHRGTLLFISEDYMAAMEDF 238
Cdd:TIGR02917 143 LAQKS----YEQALAID--PRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVdALLLKGDLLLSLGNIELALAAY 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 239 QQSLELKKNQPIAMLYKGLTFFHRGLLKEAiEVFKEALKLK---SDFIDAYKSLGQaYRElGDIENAMESFQKALLLDQN 315
Cdd:TIGR02917 217 RKAIALRPNNIAVLLALATILIEAGEFEEA-EKHADALLKKapnSPLAHYLKALVD-FQK-KNYEDARETLQDALKSAPE 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 316 HIQSLQLRGMMLYHHGSLQEAIGNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIkAQTKVML----NDPLLGQKASSE 391
Cdd:TIGR02917 294 YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAI-ATLSPALgldpDDPAALSLLGEA 372
|
330
....*....|....
gi 194578961 392 YLKVKYLREYSRYL 405
Cdd:TIGR02917 373 YLALGDFEKAAEYL 386
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
251-382 |
1.20e-17 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 80.24 E-value: 1.20e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 251 AMLYKGLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIENAMESFQKALLLDQNHIQSLQLRGMMLYHH 330
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 194578961 331 GSLQEAIGNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDP 382
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
253-382 |
1.38e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 83.63 E-value: 1.38e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 253 LYKGLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIENAMESFQKALLLDQNHIQSLQLRGMMLYHHGS 332
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 194578961 333 LQEAIGNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDP 382
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGP 141
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
200-326 |
1.60e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 76.58 E-value: 1.60e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 200 EALLDLTKAIQLQP-SARLYRHRGTLLFISEDYMAAMEDFQQSLELKKNQPIAMLYKGLTFFHRGLLKEAIEVFKEALKL 278
Cdd:COG4235 1 EAIARLRQALAANPnDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 194578961 279 KSDFIDAYKSLGQAYRELGDIENAMESFQKALLLDQNHIQSLQLRGMM 326
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
267-373 |
3.19e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 75.81 E-value: 3.19e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 267 EAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIENAMESFQKALLLDQNHIQSLQLRGMMLYHHGSLQEAIGNFKRCLQL 346
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100
....*....|....*....|....*..
gi 194578961 347 EPYNEVCQYMKGLSHVAMGQFYEGIKA 373
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAA 107
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
119-251 |
4.04e-15 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 79.65 E-value: 4.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 119 LIGNGLYDEAIKHFSLLLQGDPELVSAIYGRGIAygkksLQDIKNADLALYELSRVIALEPNRPEVYEQRAEILSPLGRI 198
Cdd:COG3914 88 LQALGRYEEALALYRRALALNPDNAEALFNLGNL-----LLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRL 162
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 194578961 199 SEALLDLTKAIQLQPS-ARLYRHRGTLLFISEDYMAAMEDFQQSLELKKNQPIA 251
Cdd:COG3914 163 EEAIAALRRALELDPDnAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADA 216
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
162-313 |
4.49e-15 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 73.46 E-value: 4.49e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 162 KNADLALYELSRVIALEPNRPEVYEQRAEILSPLGRISEALLDLTKAIQLQPSARLYRHRGTLLFISEDYMAAMEDFQQS 241
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 194578961 242 LELKKNQPIAMLYKGLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIENAMESFQKALLLD 313
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
259-348 |
3.48e-14 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 68.66 E-value: 3.48e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 259 FFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIENAMEsFQKALLLDQNHIQSLQLRGMMLYHHGSLQEAIG 338
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|
gi 194578961 339 NFKRCLQLEP 348
Cdd:COG3063 81 YLERALELDP 90
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
177-348 |
3.78e-14 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 72.64 E-value: 3.78e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 177 LEPNRPEVYEQRAEILSPLGRISEALLDLTKAIQLQPSARLYRHRGTLLFISEDYMAAMEDFQQSLELKKNQPIAMLYKG 256
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 257 LTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIENAMESFQKALLLDQNHIQSLQLRGMMLYHHGSLQEA 336
Cdd:COG4785 81 VAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELA 160
|
170
....*....|..
gi 194578961 337 IGNFKRCLQLEP 348
Cdd:COG4785 161 IADLEKALELDP 172
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
200-348 |
1.44e-13 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 69.22 E-value: 1.44e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 200 EALLDLTKAIQLQPSARLYRHRGTLLFISEDYMAAMEDFQQSLELKKNQPIAMLYKGLTFFHRGLLKEAIEVFKEALKLK 279
Cdd:COG5010 5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD 84
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 194578961 280 SDFIDAYKSLGQAYRELGDIENAMESFQKALLLDQNHIQSLQLRGMMLYHHGSLQEAIGNFKRCLQLEP 348
Cdd:COG5010 85 PNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
118-396 |
2.10e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 74.35 E-value: 2.10e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 118 VLIGNGLYDEAIKHFSLLLQGDPELVSAIYGRGIAYGKKslqdiKNADLALYELSRVIALEPNRPEVYEQRAEILSPLGR 197
Cdd:TIGR02917 338 IQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLAL-----GDFEKAAEYLAKATELDPENAAARTQLGISKLSQGD 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 198 ISEALLDLTKAIQLQPSarLYRHRgtlLFISEDYM------AAMEDFQQSLELKKNQPIAMLYKGLTFFHRGLLKEAIEV 271
Cdd:TIGR02917 413 PSEAIADLETAAQLDPE--LGRAD---LLLILSYLrsgqfdKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREA 487
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 272 FKEALKLKSDFIDAYKSLGQAYRELGDIENAMESFQKALLLDQNHIQSLQLRGMMLYHHGSLQEAIGNFKRCLQLEPYNE 351
Cdd:TIGR02917 488 FEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEI 567
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 194578961 352 VcqymkglSHVAMGQFYEGIK--AQTKVMLNDPLLGQKASSEYLKVK 396
Cdd:TIGR02917 568 E-------PALALAQYYLGKGqlKKALAILNEAADAAPDSPEAWLML 607
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
115-400 |
8.34e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 72.42 E-value: 8.34e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 115 IGYVLIGNGLYDEAIKHFSLLLQGDPELVSAIYGRG-IAYGKKslqdikNADLALYELSRVIALEPNRPEVYEQRAEILS 193
Cdd:TIGR02917 471 LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLArIDIQEG------NPDDAIQRFEKVLTIDPKNLRAILALAGLYL 544
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 194 PLGRISEALLDLTKAIQLQPS--------ARLYRHRGTLlfisedyMAAMEDFQQSLELKKNQPIAMLYKGLTFFHRGLL 265
Cdd:TIGR02917 545 RTGNEEEAVAWLEKAAELNPQeiepalalAQYYLGKGQL-------KKALAILNEAADAAPDSPEAWLMLGRAQLAAGDL 617
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 266 KEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIENAMESFQKALLLDQNHIQSLQLRGMMLYHHGSLQEAIGNFKRCLQ 345
Cdd:TIGR02917 618 NKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 194578961 346 LEPYNEVCQYMKGLSHVAMGQ-------FYEGIK----AQTKVMLNDPLLGQKASSEYLKV--KYLRE 400
Cdd:TIGR02917 698 QHPKAALGFELEGDLYLRQKDypaaiqaYRKALKrapsSQNAIKLHRALLASGNTAEAVKTleAWLKT 765
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
115-254 |
4.62e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 69.64 E-value: 4.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 115 IGYVLIGNGLYDEAIKHFSLLLQGDPELVSAIYGRGIAYgkKSLQDIKNAdLALYElsRVIALEPNRPEVYEQRAEILSP 194
Cdd:COG3914 118 LGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAL--RRLGRLEEA-IAALR--RALELDPDNAEALNNLGNALQD 192
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 194578961 195 LGRISEALLDLTKAIQLQPSARLYRHRgtLLFI---SEDYMAAMEDFQQSLELKKNQ----PIAMLY 254
Cdd:COG3914 193 LGRLEEAIAAYRRALELDPDNADAHSN--LLFAlrqACDWEVYDRFEELLAALARGPselsPFALLY 257
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
103-398 |
7.44e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 69.34 E-value: 7.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 103 AVDNQNTNEELAIGYVLIGNGLYDEAIKHFSLLLQGDPELVSAIYGRGIAYgkKSLQDIKNADlalYELSRVIALEPNRP 182
Cdd:TIGR02917 16 ACGDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIY--LALGDYAAAE---KELRKALSLGYPKN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 183 EVYEQRAEILSPLGRISEAlLDLTKAIQLQP---SARLYRHRGTLLFISEDYMAAMEDFQQSLELKKNQPIAMLYKGLTF 259
Cdd:TIGR02917 91 QVLPLLARAYLLQGKFQQV-LDELPGKTLLDdegAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 260 FHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIENAMESFQKALLLDQNHIQSLQLRGMMLYHHGSLQEAIGN 339
Cdd:TIGR02917 170 LAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKH 249
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 194578961 340 FKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPllgqkassEYLKVKYL 398
Cdd:TIGR02917 250 ADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAP--------EYLPALLL 300
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
167-389 |
7.71e-12 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 68.86 E-value: 7.71e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 167 ALYELSRVIALEPNRPEVYEQRAEILSPLGRISEALLDLTKAIQLQPS-ARLYRHRGTLLFISEDYMAAMEDFQQSLELK 245
Cdd:TIGR00990 350 ALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEdPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 246 KNQPIAMLYKGLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIENAMESFQ------------------ 307
Cdd:TIGR00990 430 PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDtaieleketkpmymnvlp 509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 308 ---KALLL---DQNHIQSLQL---------------RGM--MLYHHGSLQEAIGNFKRCLQLEPYNEvcQYMKGLShvam 364
Cdd:TIGR00990 510 linKALALfqwKQDFIEAENLcekaliidpecdiavATMaqLLLQQGDVDEALKLFERAAELARTEG--ELVQAIS---- 583
|
250 260
....*....|....*....|....*
gi 194578961 365 gqFYEGIKAQTKVMLNDPLLGQKAS 389
Cdd:TIGR00990 584 --YAEATRTQIQVQEDYPVLASKLQ 606
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
176-345 |
1.42e-11 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 68.09 E-value: 1.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 176 ALEPNRPEVYEQRAEILsplgrisEALLDLTKaiqLQPS-ARLYRHRGTLLFISEDYMAAMEDFQQSLELKKNQPIAMLY 254
Cdd:TIGR00990 301 SPESKADESYEEAARAF-------EKALDLGK---LGEKeAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIK 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 255 KGLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIENAMESFQKALLLDQNHIQS-LQLrGMMLYHHGSL 333
Cdd:TIGR00990 371 RASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFShIQL-GVTQYKEGSI 449
|
170
....*....|..
gi 194578961 334 QEAIGNFKRCLQ 345
Cdd:TIGR00990 450 ASSMATFRRCKK 461
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
127-257 |
3.39e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 61.56 E-value: 3.39e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 127 EAIKHFSLLLQGDPELVSAIYGRGIAYgkkslQDIKNADLALYELSRVIALEPNRPEVYEQRAEILSPLGRISEALLDLT 206
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAY-----LRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLE 75
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 194578961 207 KAIQLQPS-ARLYRHRGTLLFISEDYMAAMEDFQQSLEL-KKNQPIAMLYKGL 257
Cdd:COG4235 76 RALALDPDnPEALYLLGLAAFQQGDYAEAIAAWQKLLALlPADAPARLLEASI 128
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
118-216 |
8.35e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 59.03 E-value: 8.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 118 VLIGNGLYDEAIKHFSLLLQGDPELVSAIYGRGIAYgkkslQDIKNADLALyELSRVIALEPNRPEVYEQRAEILSPLGR 197
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLL-----LEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGD 74
|
90
....*....|....*....
gi 194578961 198 ISEALLDLTKAIQLQPSAR 216
Cdd:COG3063 75 YDEALAYLERALELDPSAL 93
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
242-383 |
1.02e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 60.74 E-value: 1.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 242 LELKKNQPIAMLYKGLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIENAMESFQKALLLDQNHIQSLQ 321
Cdd:COG5010 13 YLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYY 92
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 194578961 322 LRGMMLYHHGSLQEAIGNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPL 383
Cdd:COG5010 93 NLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPL 154
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
292-384 |
1.99e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 58.26 E-value: 1.99e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 292 AYRELGDIENAMESFQKALLLDQNHIQSLQLRGMMLYHHGSLQEAIgNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGI 371
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|...
gi 194578961 372 KAQTKVMLNDPLL 384
Cdd:COG3063 80 AYLERALELDPSA 92
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
284-382 |
3.02e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.05 E-value: 3.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 284 DAYKSLGQAYRELGDIENAMESFQKALLLDQNHIQSLQLRGMMLYHHGSLQEAIGNFKRCLQLEPYNEVCQYMKGLSHVA 363
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90
....*....|....*....
gi 194578961 364 MGQFYEGIKAQTKVMLNDP 382
Cdd:COG4783 85 AGDYDEALALLEKALKLDP 103
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
103-277 |
3.40e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 61.67 E-value: 3.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 103 AVDNQNTNEELAIGYVLIGNGLYDEAIKHFSLLLQGDPELVSAIYGRGIAYgkkslQDIKNADLALYELSRVIALEPNRP 182
Cdd:COG2956 70 ERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIY-----EQEGDWEKAIEVLERLLKLGPENA 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 183 EVYEQRAEILSPLGRISEALLDLTKAIQLQP-SARLYRHRGTLLFISEDYMAAMEDFQQSLELKKN-------------- 247
Cdd:COG2956 145 HAYCELAELYLEQGDYDEAIEALEKALKLDPdCARALLLLAELYLEQGDYEEAIAALERALEQDPDylpalprlaelyek 224
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 194578961 248 -------------------QPIAMLYKGLTFFHRGLLKEAIEVFKEALK 277
Cdd:COG2956 225 lgdpeealellrkaleldpSDDLLLALADLLERKEGLEAALALLERQLR 273
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
96-213 |
4.00e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 59.20 E-value: 4.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 96 EQRRFPFAVDNQNTNEELAIGYVLIGNGLYDEAIKHFSLLLQGDPELVSAIYGRGIAYGKKslqdiKNADLALYELSRVI 175
Cdd:COG5010 41 ELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRS-----GDKDEAKEYYEKAL 115
|
90 100 110
....*....|....*....|....*....|....*...
gi 194578961 176 ALEPNRPEVYEQRAEILSPLGRISEALLDLTKAIQLQP 213
Cdd:COG5010 116 ALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
195-281 |
9.37e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 56.33 E-value: 9.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 195 LGRISEALLDLTKAIQLQPS-ARLYRHRGTLLFISEDYMAAMEdFQQSLELKKNQPIAMLYKGLTFFHRGLLKEAIEVFK 273
Cdd:COG3063 5 LGDLEEAEEYYEKALELDPDnADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLE 83
|
....*...
gi 194578961 274 EALKLKSD 281
Cdd:COG3063 84 RALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
97-246 |
1.12e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 54.97 E-value: 1.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 97 QRRFPFAVDNQNTNEELAIGYVLIGNGLYDEAIKHFSLLLQGDPELVSAIYGRGIAYGKKSLQDIKNADLALYELSRVIA 176
Cdd:COG5010 3 ALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 194578961 177 LEPNRPEVYEQRAEILSPLGRISEALLDLTKAIQLQP-SARLYRHRGTLLFISEDYMAAMEDFQQSLELKK 246
Cdd:COG5010 83 LDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPdNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
180-313 |
3.56e-08 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 56.07 E-value: 3.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 180 NRPEVYEQRAEILSPLGRISEALLDLTKAIQLQPSARLYRHRGTLLfiSEDYMAAMEDFQQSLELKKNQPIAMLYKGLTF 259
Cdd:COG3071 191 RDPELAAAYARALIALGDHDEAERLLREALKRQWDPRLVRLYGRLQ--GGDPAKQLKRAEKWLKKHPNDPDLLLALGRLC 268
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 194578961 260 FHRGLLKEAIEVFKEALKLKSDfIDAYKSLGQAYRELGDIENAMESFQKALLLD 313
Cdd:COG3071 269 LRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALALA 321
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
103-383 |
1.39e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 55.47 E-value: 1.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 103 AVDNQNTNEEL--AIGYVLIGNGLYDEAIKHFSLLLQGDPE------LVSAIYG------RGIAYGKKSLQDIKNADLAL 168
Cdd:TIGR02917 593 AADAAPDSPEAwlMLGRAQLAAGDLNKAVSSFKKLLALQPDsalallLLADAYAvmknyaKAITSLKRALELKPDNTEAQ 672
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 169 YELSRvIALEPNRPE--------VYEQR---AEILSPLGRI-------SEALLDLTKAIQLQPSARLYRHRGTLLFISED 230
Cdd:TIGR02917 673 IGLAQ-LLLAAKRTEsakkiaksLQKQHpkaALGFELEGDLylrqkdyPAAIQAYRKALKRAPSSQNAIKLHRALLASGN 751
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 231 YMAAMEDFQQSLELKKNQPIAMLYKGLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIEnAMESFQKAL 310
Cdd:TIGR02917 752 TAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPR-ALEYAERAL 830
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 194578961 311 LLDQNHIQSLQLRGMMLYHHGSLQEAIGNFKRCLQLEPYNEVCQYmkglsHVAMGQFYEGIKAQTKVMLNDPL 383
Cdd:TIGR02917 831 KLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRY-----HLALALLATGRKAEARKELDKLL 898
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
217-393 |
2.48e-07 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 52.22 E-value: 2.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 217 LYRHRGTLLFISEDYMAAMEDFQQSLELKKNQPIAMLYKGLTFFHRGLLKEAIEVFKEALK------LKSDFIDAYKSLG 290
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAEridralALPDLAQLYYERG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 291 QAYRELGDIENAMESFQKALLLDQNHIQSLQLRGMMLYHHGSLQEAIGNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEG 370
Cdd:COG4785 81 VAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELA 160
|
170 180
....*....|....*....|...
gi 194578961 371 IKAQTKVMLNDPLLGQKASSEYL 393
Cdd:COG4785 161 IADLEKALELDPNDPERALWLYL 183
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
165-249 |
3.53e-07 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 53.25 E-value: 3.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 165 DLALYELSRVIALEPNRPEVYEQRAEILSPLGRISEALLDLTKAIQLQPS-ARLYRHRGTLLFISEDYMAAMEDFQQSLE 243
Cdd:PLN03088 19 ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSlAKAYLRKGTACMKLEEYQTAKAALEKGAS 98
|
....*.
gi 194578961 244 LKKNQP 249
Cdd:PLN03088 99 LAPGDS 104
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
284-370 |
4.66e-07 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 52.63 E-value: 4.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 284 DAYKSLGQAYRELGDIENAMESFQKALLLDQNHIQSLQLRGMMLYHHGSLQEAIGNFKRCLQLEPYNEVCQYMKglshva 363
Cdd:cd24142 1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEKYLY------ 74
|
....*..
gi 194578961 364 MGQFYEG 370
Cdd:cd24142 75 LGQLSGG 81
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
163-346 |
1.11e-06 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 51.48 E-value: 1.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 163 NADLALYELSRVIALEPNRPEVYEQRAEILSPLGRISEALLDLTKAIQLQPSArlyrhrGTLLFIsedYMAAMEDFQQSL 242
Cdd:cd24142 15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG------GYEKYL---YLGQLSGGEEAL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 243 ELkKNQPIAMLYKGLtffhRGLLKEAIEVFKEALKLKSDFIDAYKSLGQAY-RELGDIENAmES-----FQKALLLDQNH 316
Cdd:cd24142 86 QY-YEKGIEILEEEL----QALQAASAEAEEEAEELKRKLSSALCALAEIYmTDLCDEPDA-EQrceelITKALELDPTN 159
|
170 180 190
....*....|....*....|....*....|
gi 194578961 317 IQSLQLRGMMLYHHGSLQEAIGNFKRCLQL 346
Cdd:cd24142 160 PEALQTLASLRISQQRPDEAKEALRRSLEL 189
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
256-297 |
2.14e-06 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 45.16 E-value: 2.14e-06
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 194578961 256 GLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYRELG 297
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
283-316 |
2.22e-06 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 44.74 E-value: 2.22e-06
10 20 30
....*....|....*....|....*....|....
gi 194578961 283 IDAYKSLGQAYRELGDIENAMESFQKALLLDQNH 316
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
283-316 |
3.68e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 43.95 E-value: 3.68e-06
10 20 30
....*....|....*....|....*....|....
gi 194578961 283 IDAYKSLGQAYRELGDIENAMESFQKALLLDQNH 316
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
83-243 |
4.41e-06 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 48.76 E-value: 4.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 83 NAEKILNQAKLFVEQRRFPFAVDNQNTNEELA---------IGYVLIGNGLYDEAIKHFSLLLQGDPELVSAIYGRGIAY 153
Cdd:COG4785 72 LAQLYYERGVAYDSLGDYDLAIADFDQALELDpdlaeaynnRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIAL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 154 gkkslQDIKNADLALYELSRVIALEPNRPEVYEQRaeilsplgRISEALLDLTKAIQlqpsaRLYRHRGTLLFISEDYMA 233
Cdd:COG4785 152 -----YYLGRYELAIADLEKALELDPNDPERALWL--------YLAERKLDPEKALA-----LLLEDWATAYLLQGDTEE 213
|
170
....*....|
gi 194578961 234 AMEDFQQSLE 243
Cdd:COG4785 214 ARELFKLALA 223
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
69-372 |
4.88e-06 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 49.98 E-value: 4.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 69 EEGSSPPCESVFSLNAEKILNQAKLFVEQRRFPFAVDNQNTNEelaigyvLIGNGLYDEAIKHFS--LLLQGDPelvsaI 146
Cdd:TIGR00990 94 TAPKNAPVEPADELPEIDESSVANLSEEERKKYAAKLKEKGNK-------AYRNKDFNKAIKLYSkaIECKPDP-----V 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 147 YGRGIAYGKKSLQDIKNAdlaLYELSRVIALEPNRPEVYEQRAEILSPLGRISEALLDLT-------------------- 206
Cdd:TIGR00990 162 YYSNRAACHNALGDWEKV---VEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTasciidgfrneqsaqaverl 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 207 -------KAIQ------------------------------LQPSARLYRHRGTLLF----------ISEDYMAAMEDFQ 239
Cdd:TIGR00990 239 lkkfaesKAKEiletkpenlpsvtfvgnylqsfrpkprpagLEDSNELDEETGNGQLqlglkspeskADESYEEAARAFE 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 240 QSL---ELKKNQPIAMLYKGLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIENAMESFQKALLLDQNH 316
Cdd:TIGR00990 319 KALdlgKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED 398
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 194578961 317 IQSLQLRGMMLYHHGSLQEAIGNFKRCLQLEPYN-------EVCQYMKGLSHVAMGQFYEGIK 372
Cdd:TIGR00990 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFifshiqlGVTQYKEGSIASSMATFRRCKK 461
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
208-348 |
6.58e-06 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 48.73 E-value: 6.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 208 AIQLQPSarlYRHRGTLlfisedymAAMEDFQQSLELKKNQPIAMLYKgltffhRGLLKEAIEV-------FKEALKLKS 280
Cdd:PRK11189 33 AVPLQPT---LQQEVIL--------ARLNQILASRDLTDEERAQLHYE------RGVLYDSLGLralarndFSQALALRP 95
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 194578961 281 DFIDAYKSLGQAYRELGDIENAMESFQKALLLDQNHIQSLQLRGMMLYHHGSLQEAIGNFKRCLQLEP 348
Cdd:PRK11189 96 DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP 163
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
123-366 |
8.59e-06 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 48.75 E-value: 8.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 123 GLYDEAIKHFSLLLQGDPELVSAiygRGIAYGKKSLQDiKNADLALYELSRVIALEPNRPEVYEQRAEILSPLGRiSEAL 202
Cdd:COG3071 64 GDYERRDEYLAQALELAPEAELA---VLLTRAELLLDQ-GQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGD-WEEL 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 203 LDLTKAIQ----LQPS-ARLYR---HRGTLLFISEDYmAAMEDFQQSL--ELKKNQPIAMLY-KGLTffHRGLLKEAIEV 271
Cdd:COG3071 139 LELLPALRkhkaLSAEeAQALErraYLGLLRQAARDA-EALKALWKALprAERRDPELAAAYaRALI--ALGDHDEAERL 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 272 FKEALKLKSDfidayKSLGQAYREL--GDIENAMESFQKALLLDQNHIQSLQLRGMMLYHHGSLQEAIGNFKRCLQLEPY 349
Cdd:COG3071 216 LREALKRQWD-----PRLVRLYGRLqgGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPS 290
|
250
....*....|....*..
gi 194578961 350 NEVCQYMkGLSHVAMGQ 366
Cdd:COG3071 291 AEAYAEL-ARLLEQLGD 306
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
259-348 |
1.00e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 42.29 E-value: 1.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 259 FFHRGLLKEAIEVFKEALKL--KSDFI-DAYKSLGQAYRELGDIENAMESFQKALLLDQNHI---QSLQLRGMMLYHHGS 332
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRypNSPLApDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGD 82
|
90
....*....|....*.
gi 194578961 333 LQEAIGNFKRCLQLEP 348
Cdd:COG1729 83 YDKARATLEELIKKYP 98
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
250-310 |
2.11e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 40.45 E-value: 2.11e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 194578961 250 IAMLYKGLTFFHRGLLKEAIEVFKEALKLKSDFID--------AYKSLGQAYRELGDIENAMESFQKAL 310
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLLGpdhpltatTLLNLGRLYLELGRYEEALELLERAL 72
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
221-281 |
2.61e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 40.01 E-value: 2.61e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 194578961 221 RGTLLFISEDYMAAMEDFQQSLELKKNQP---IAMLYKGLTFFHRGLLKEAIEVFKEALKLKSD 281
Cdd:pfam13432 3 LARAALRAGDYDDAAAALEAALARFPESPdaaAALLLLGLAALRQGRLAEAAAAYRAALRAAPG 66
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
289-315 |
2.93e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 38.53 E-value: 2.93e-04
10 20
....*....|....*....|....*..
gi 194578961 289 LGQAYRELGDIENAMESFQKALLLDQN 315
Cdd:pfam13181 7 LGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| PRK09782 |
PRK09782 |
bacteriophage N4 receptor, outer membrane subunit; Provisional |
196-342 |
3.33e-04 |
|
bacteriophage N4 receptor, outer membrane subunit; Provisional
Pssm-ID: 236624 [Multi-domain] Cd Length: 987 Bit Score: 44.52 E-value: 3.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 196 GRISEALLDLTKAIQLQPSARLYRHRGTLLFISEDYMAAMEDFQQSLELKKNQPIAMLYKGLTFFHRGLLKEAIEVFKEA 275
Cdd:PRK09782 590 GQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA 669
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 276 LKlksDFIDAY---KSLGQAYRELGDIENAMESFQKALLLDQNHIQSLQLrgmmlyhHGSLQEAIGNFKR 342
Cdd:PRK09782 670 HK---GLPDDPaliRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPL-------TPEQNQQRFNFRR 729
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
123-315 |
3.51e-04 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 44.30 E-value: 3.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 123 GLYDEAIKHFSLLLQGDP----------ELVSAIYGRgiaygkkslqdiknADLALYELSRVIALEPNRPEVYEQRAEIL 192
Cdd:PRK11447 126 GRTEEALASYDKLFNGAPpeldlaveywRLVAKLPAQ--------------RPEAINQLQRLNADYPGNTGLRNTLALLL 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 193 SPLGRISEALLDLTK-----AIQLQPSARLYRHRGTLLfISEDYMAAMEDFQQ-----------SLELKKNQpiAML--- 253
Cdd:PRK11447 192 FSSGRRDEGFAVLEQmakspAGRDAAAQLWYGQIKDMP-VSDASVAALQKYLQvfsdgdsvaaaRSQLAEQQ--KQLadp 268
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 194578961 254 -----YKGLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIENAMESFQKALLLDQN 315
Cdd:PRK11447 269 afrarAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH 335
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
170-336 |
5.78e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 43.69 E-value: 5.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 170 ELSRVIALEPNRPEVYEQRAEILSPLGRISEALLDLTKAIQLQ--------------PSARLYRHRGTLLFisEDYMAAM 235
Cdd:COG3899 733 ELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARalaalaalrhgnppASARAYANLGLLLL--GDYEEAY 810
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 236 EDFQQSLEL------KKNQPIAMLYKGLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIENAMESFQKA 309
Cdd:COG3899 811 EFGELALALaerlgdRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAAALAAAA 890
|
170 180
....*....|....*....|....*..
gi 194578961 310 LLLDQNHIQSLQLRGMMLYHHGSLQEA 336
Cdd:COG3899 891 AAAARLLAAAAAALAAAAAAAALAAAE 917
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
284-315 |
6.18e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 37.89 E-value: 6.18e-04
10 20 30
....*....|....*....|....*....|..
gi 194578961 284 DAYKSLGQAYRELGDIENAMESFQKALLLDQN 315
Cdd:pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
267-339 |
7.36e-04 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 41.20 E-value: 7.36e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 194578961 267 EAIEVFKEALKLKSDFID-AY--KSLGQAYRELGDIENAMESFQKALLLDQNHIQSLQLRGMMLYHHGSLQEAIGN 339
Cdd:PRK02603 53 EALENYEEALKLEEDPNDrSYilYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGD 128
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
113-185 |
7.58e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 43.06 E-value: 7.58e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 194578961 113 LAIGYVLIGNGLYDEAIKHFSLLLQGDPELVSAIYGRGIAygkksLQDIKNADLALYELSRVIALEPNRPEVY 185
Cdd:COG3914 150 LNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNA-----LQDLGRLEEAIAAYRRALELDPDNADAH 217
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
265-323 |
1.59e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.56 E-value: 1.59e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 194578961 265 LKEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIENAMESFQKALLLDQNHIQSLQLR 323
Cdd:pfam14559 4 YAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALL 62
|
|
| TPR_9 |
pfam13371 |
Tetratricopeptide repeat; |
162-216 |
1.74e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463860 [Multi-domain] Cd Length: 73 Bit Score: 37.58 E-value: 1.74e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 194578961 162 KNADLALYELSRVIALEPNRPEVYEQRAEILSPLGRISEALLDLTKAIQLQPSAR 216
Cdd:pfam13371 9 EDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAP 63
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
83-180 |
1.75e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 39.40 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 83 NAEKILNQAKLFVEQRRFP---------FAVDNQNTNEELAIGYVLIGNGLYDEAIKHFSLLLQGDPELVSAIYGRGIAY 153
Cdd:COG4783 37 NPEAFALLGEILLQLGDLDeaivllheaLELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAY 116
|
90 100
....*....|....*....|....*..
gi 194578961 154 gkkslQDIKNADLALYELSRVIALEPN 180
Cdd:COG4783 117 -----RALGRPDEAIAALEKALELDPD 138
|
|
| PRK12370 |
PRK12370 |
HilA/EilA family virulence transcriptional regulator; |
234-359 |
3.76e-03 |
|
HilA/EilA family virulence transcriptional regulator;
Pssm-ID: 237080 [Multi-domain] Cd Length: 553 Bit Score: 40.61 E-value: 3.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 234 AMEDFQQSLELKKNQPIAMLYKGLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQAYRELGDIENAMESFQKALLLD 313
Cdd:PRK12370 323 AKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD 402
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 194578961 314 QNHIQSLQLRGMMLYHHGSLQEAI--GNFKRCLQLEPyNEVCQYMKGL 359
Cdd:PRK12370 403 PTRAAAGITKLWITYYHTGIDDAIrlGDELRSQHLQD-NPILLSMQVM 449
|
|
| BTAD |
smart01043 |
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ... |
176-240 |
5.05e-03 |
|
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.
Pssm-ID: 198111 [Multi-domain] Cd Length: 145 Bit Score: 38.05 E-value: 5.05e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 194578961 176 ALEPNRPEVYEQRAEILSPLGRISEALLDLTKAIQLQPSA-RLYRHRGTLLFISEDYMAAMEDFQQ 240
Cdd:smart01043 55 RLRELRLEALEALAEALLALGRHEEALALLERLLALDPLReRLHRLLMRALYRAGRRAEALRAYRR 120
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
281-346 |
5.07e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.60 E-value: 5.07e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 194578961 281 DFIDAYKSLGQAYRELGDIENAMESFQKALLLDQ--------NHIQSLQLRGMMLYHHGSLQEAIGNFKRCLQL 346
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARrllgpdhpLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
188-336 |
7.07e-03 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 39.60 E-value: 7.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 188 RAEILSPLGRISEALLDLTKAIQLQPSARLYrHRGTLLF-------ISEDYMAAMEDFQQSLELKKNQPI------AMLY 254
Cdd:pfam17874 7 RAQLAISKGDAERALELAEQALALLPEDDLL-ARGLATFvlgeaylCLGDLDAALQAMREAEALARRADSphvtlwALLQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 255 KGLTFFHRGLLKEAIEVFKEALKLKSD--------FIDAYKSLGQAYRELGDIENAMESFQKALLLDQNH--IQSLQLRG 324
Cdd:pfam17874 86 QGEILRAQGRLHQALETYQQALQLARDhglqhlplHGFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWepDAAVDAYV 165
|
170
....*....|....*
gi 194578961 325 MMLYHH---GSLQEA 336
Cdd:pfam17874 166 LLARIAlaqGELEEA 180
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
122-216 |
8.03e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.89 E-value: 8.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 122 NGLYDEAIKHFSLLLQGDPE---LVSAIYGRGIAYGKKslqdiKNADLALYELSRVIALEPN---RPEVYEQRAEILSPL 195
Cdd:COG1729 6 AGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYAL-----GDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLEL 80
|
90 100
....*....|....*....|.
gi 194578961 196 GRISEALLDLTKAIQLQPSAR 216
Cdd:COG1729 81 GDYDKARATLEELIKKYPDSE 101
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
83-191 |
9.62e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 37.29 E-value: 9.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194578961 83 NAEKILNQAKLFVEQRRFPFAV---------DNQNTNEELAIGYVLIGNGLYDEAIKHFSLLLQGDPELVSAIYGRGIAY 153
Cdd:COG4235 16 DAEGWLLLGRAYLRLGRYDEALaayekalrlDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAA 95
|
90 100 110
....*....|....*....|....*....|....*...
gi 194578961 154 gkkslQDIKNADLALYELSRVIALEPNRPEVYEQRAEI 191
Cdd:COG4235 96 -----FQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
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