ZIM-like 1 [Arabidopsis thaliana]
Protein Classification
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| CCT | pfam06203 | CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino ... |
141-184 | 4.54e-18 | ||
CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localization signal within the second half of the CCT motif. Toc1 mutants have been identified in this region. : Pssm-ID: 461849 Cd Length: 44 Bit Score: 74.46 E-value: 4.54e-18
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| TIFY | smart00979 | This short possible domain is found in a variety of plant transcription factors that contain ... |
73-108 | 8.09e-12 | ||
This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs; Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. : Pssm-ID: 198047 Cd Length: 36 Bit Score: 57.66 E-value: 8.09e-12
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| Name | Accession | Description | Interval | E-value | ||
| CCT | pfam06203 | CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino ... |
141-184 | 4.54e-18 | ||
CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localization signal within the second half of the CCT motif. Toc1 mutants have been identified in this region. Pssm-ID: 461849 Cd Length: 44 Bit Score: 74.46 E-value: 4.54e-18
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| TIFY | smart00979 | This short possible domain is found in a variety of plant transcription factors that contain ... |
73-108 | 8.09e-12 | ||
This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs; Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Pssm-ID: 198047 Cd Length: 36 Bit Score: 57.66 E-value: 8.09e-12
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| tify | pfam06200 | tify domain; This short possible domain is found in a variety of plant transcription factors ... |
79-107 | 1.46e-10 | ||
tify domain; This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs. Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Pssm-ID: 461847 Cd Length: 33 Bit Score: 54.30 E-value: 1.46e-10
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| Name | Accession | Description | Interval | E-value | ||
| CCT | pfam06203 | CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino ... |
141-184 | 4.54e-18 | ||
CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localization signal within the second half of the CCT motif. Toc1 mutants have been identified in this region. Pssm-ID: 461849 Cd Length: 44 Bit Score: 74.46 E-value: 4.54e-18
|
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| TIFY | smart00979 | This short possible domain is found in a variety of plant transcription factors that contain ... |
73-108 | 8.09e-12 | ||
This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs; Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Pssm-ID: 198047 Cd Length: 36 Bit Score: 57.66 E-value: 8.09e-12
|
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| tify | pfam06200 | tify domain; This short possible domain is found in a variety of plant transcription factors ... |
79-107 | 1.46e-10 | ||
tify domain; This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs. Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Pssm-ID: 461847 Cd Length: 33 Bit Score: 54.30 E-value: 1.46e-10
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| Blast search parameters | ||||
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