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Conserved domains on  [gi|157821613|ref|NP_001102648|]
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ATP synthase subunit C lysine N-methyltransferase [Rattus norvegicus]

Protein Classification

methyltransferase domain-containing protein( domain architecture ID 1012635)

methyltransferase domain-containing protein similar to Caenorhabditis elegans small RNA 2'-O-methyltransferase that adds a 2'-O-methyl group at the 3'-end of PIWI-interacting RNAs (piRNAs) and small interfering RNAs (siRNAs) which are classes of regulatory RNAs that are involved in gene silencing in endogenous RNA interference (RNAi) pathways

EC:  2.1.1.-
Gene Ontology:  GO:0008168|GO:0032259
PubMed:  22536158

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UbiG super family cl34436
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and ...
 70-157 8.82e-05

2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase is part of the Pathway/BioSystem: Ubiquinone biosynthesis


The actual alignment was detected with superfamily member COG2227:

Pssm-ID: 441829 [Multi-domain]  Cd Length: 126  Bit Score: 40.77  E-value: 8.82e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157821613  70 SRQVENVVKMLQHRRGPLVDIGSGDGRIVIAAAKAGFPAVGYELNPWLVWYSRYRAWREGVHgsakFYISDLWKVTFA-- 147
Cdd:COG2227   11 DRRLAALLARLLPAGGRVLDVGCGTGRLALALARRGADVTGVDISPEALEIARERAAELNVD----FVQGDLEDLPLEdg 86

                         90
                 ....*....|
gi 157821613 148 QYSNVVIFGV 157
Cdd:COG2227   87 SFDLVICSEV 96
 
Name Accession Description Interval E-value
UbiG COG2227
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and ...
 70-157 8.82e-05

2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 441829 [Multi-domain]  Cd Length: 126  Bit Score: 40.77  E-value: 8.82e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157821613  70 SRQVENVVKMLQHRRGPLVDIGSGDGRIVIAAAKAGFPAVGYELNPWLVWYSRYRAWREGVHgsakFYISDLWKVTFA-- 147
Cdd:COG2227   11 DRRLAALLARLLPAGGRVLDVGCGTGRLALALARRGADVTGVDISPEALEIARERAAELNVD----FVQGDLEDLPLEdg 86

                         90
                 ....*....|
gi 157821613 148 QYSNVVIFGV 157
Cdd:COG2227   87 SFDLVICSEV 96
 
Name Accession Description Interval E-value
UbiG COG2227
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and ...
 70-157 8.82e-05

2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 441829 [Multi-domain]  Cd Length: 126  Bit Score: 40.77  E-value: 8.82e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157821613  70 SRQVENVVKMLQHRRGPLVDIGSGDGRIVIAAAKAGFPAVGYELNPWLVWYSRYRAWREGVHgsakFYISDLWKVTFA-- 147
Cdd:COG2227   11 DRRLAALLARLLPAGGRVLDVGCGTGRLALALARRGADVTGVDISPEALEIARERAAELNVD----FVQGDLEDLPLEdg 86

                         90
                 ....*....|
gi 157821613 148 QYSNVVIFGV 157
Cdd:COG2227   87 SFDLVICSEV 96
Cfa COG2230
Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport ...
 67-157 6.10e-04

Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport and metabolism];


Pssm-ID: 441831 [Multi-domain]  Cd Length: 158  Bit Score: 38.76  E-value: 6.10e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157821613  67 PATSRQVENVVKMLQHRRGP-LVDIGSGDGRIVIAAAKA-GFPAVGYELNPWLVWYSRYRAWREGVHGSAKFYISDLWKV 144
Cdd:COG2230   34 EAQEAKLDLILRKLGLKPGMrVLDIGCGWGGLALYLARRyGVRVTGVTLSPEQLEYARERAAEAGLADRVEVRLADYRDL 113

                         90
                 ....*....|....
gi 157821613 145 TF-AQYSNVVIFGV 157
Cdd:COG2230  114 PAdGQFDAIVSIGM 127
UbiE COG2226
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ...
 74-188 1.11e-03

Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis


Pssm-ID: 441828 [Multi-domain]  Cd Length: 143  Bit Score: 38.05  E-value: 1.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157821613  74 ENVVKMLQHRRGPLV-DIGSGDGRIVIAAAKAGFPAVGYELNPWLVWYSRYRAWREGVHgsAKFYISDLWKVTFA--QYS 150
Cdd:COG2226   12 EALLAALGLRPGARVlDLGCGTGRLALALAERGARVTGVDISPEMLELARERAAEAGLN--VEFVVGDAEDLPFPdgSFD 89

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 157821613 151 NVVIFGVPQMMPQLEKKL-EFE--LEDGARVIACRFPFPHW 188
Cdd:COG2226   90 LVISSFVLHHLPDPERALaEIArvLKPGGRLVVVDFSPPDL 130
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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