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Conserved domains on  [gi|157819297|ref|NP_001102309|]
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methyltransferase-like protein 2A [Rattus norvegicus]

Protein Classification

class I SAM-dependent methyltransferase( domain architecture ID 10614797)

class I SAM-dependent methyltransferase catalyzes the methylation of one or more specific substrates using S-adenosyl-L-methionine (SAM or AdoMet) as the methyl donor

CATH:  2.20.25.110
EC:  2.1.-.-|2.1.1.-
Gene Ontology:  GO:0032259|GO:0008757|GO:0008168|GO:1904047
PubMed:  12504684|12826405

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Methyltransf_25 pfam13649
Methyltransferase domain; This family appears to be a methyltransferase domain.
 182-284 4.70e-17

Methyltransferase domain; This family appears to be a methyltransferase domain.


:

Pssm-ID: 463945 [Multi-domain]  Cd Length: 96  Bit Score: 75.68  E-value: 4.70e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819297  182 ILEVGCGVGNTVFPILQTNNnpdLFVYCCDFSATAIELVKTNSEYDPSRCFAFVHDLCDedqsYPMPKDSLDVIVLIFVL 261
Cdd:pfam13649   1 VLDLGCGTGRLTLALARRGG---ARVTGVDLSPEMLERARERAAEAGLNVEFVQGDAED----LPFPDGSFDLVVSSGVL 73

                          90       100
                  ....*....|....*....|...
gi 157819297  262 SAIVPDKMQKAISKLSRLLKPGG 284
Cdd:pfam13649  74 HHLPDPDLEAALREIARVLKPGG 96
 
Name Accession Description Interval E-value
Methyltransf_25 pfam13649
Methyltransferase domain; This family appears to be a methyltransferase domain.
 182-284 4.70e-17

Methyltransferase domain; This family appears to be a methyltransferase domain.


Pssm-ID: 463945 [Multi-domain]  Cd Length: 96  Bit Score: 75.68  E-value: 4.70e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819297  182 ILEVGCGVGNTVFPILQTNNnpdLFVYCCDFSATAIELVKTNSEYDPSRCFAFVHDLCDedqsYPMPKDSLDVIVLIFVL 261
Cdd:pfam13649   1 VLDLGCGTGRLTLALARRGG---ARVTGVDLSPEMLERARERAAEAGLNVEFVQGDAED----LPFPDGSFDLVVSSGVL 73

                          90       100
                  ....*....|....*....|...
gi 157819297  262 SAIVPDKMQKAISKLSRLLKPGG 284
Cdd:pfam13649  74 HHLPDPDLEAALREIARVLKPGG 96
UbiE COG2226
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ...
 181-300 1.38e-15

Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis


Pssm-ID: 441828 [Multi-domain]  Cd Length: 143  Bit Score: 73.10  E-value: 1.38e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819297 181 RILEVGCGVGNTVFPILQTNNNpdlfVYCCDFSATAIELVKTNSEYDPSRCFAFVHDLCDedqsYPMPKDSLDVIVLIFV 260
Cdd:COG2226   25 RVLDLGCGTGRLALALAERGAR----VTGVDISPEMLELARERAAEAGLNVEFVVGDAED----LPFPDGSFDLVISSFV 96

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 157819297 261 LSAiVPDKmQKAISKLSRLLKPGGVMLLRDYGRYDMAQLR 300
Cdd:COG2226   97 LHH-LPDP-ERALAEIARVLKPGGRLVVVDFSPPDLAELE 134
AdoMet_MTases cd02440
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ...
 181-288 1.43e-13

S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).


Pssm-ID: 100107 [Multi-domain]  Cd Length: 107  Bit Score: 66.30  E-value: 1.43e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819297 181 RILEVGCGVGNTVFPILQtnnNPDLFVYCCDFSATAIELVKTNSEYDPSRCFAFVHdlCDEDQSYPMPKDSLDVIVLIFV 260
Cdd:cd02440    1 RVLDLGCGTGALALALAS---GPGARVTGVDISPVALELARKAAAALLADNVEVLK--GDAEELPPEADESFDVIISDPP 75

                         90       100
                 ....*....|....*....|....*...
gi 157819297 261 LSAIVPDkMQKAISKLSRLLKPGGVMLL 288
Cdd:cd02440   76 LHHLVED-LARFLEEARRLLKPGGVLVL 102
PRK08317 PRK08317
hypothetical protein; Provisional
 181-284 8.47e-07

hypothetical protein; Provisional


Pssm-ID: 181382 [Multi-domain]  Cd Length: 241  Bit Score: 49.55  E-value: 8.47e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819297 181 RILEVGCGVGNTVFpILQTNNNPDLFVYCCDFSATAIELVKTNSEYDPSRCFaFVHDlcDEDQSyPMPKDSLDVIVLIFV 260
Cdd:PRK08317  22 RVLDVGCGPGNDAR-ELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVE-FVRG--DADGL-PFPDGSFDAVRSDRV 96

                         90       100
                 ....*....|....*....|....
gi 157819297 261 LSAIvPDKmQKAISKLSRLLKPGG 284
Cdd:PRK08317  97 LQHL-EDP-ARALAEIARVLRPGG 118
 
Name Accession Description Interval E-value
Methyltransf_25 pfam13649
Methyltransferase domain; This family appears to be a methyltransferase domain.
 182-284 4.70e-17

Methyltransferase domain; This family appears to be a methyltransferase domain.


Pssm-ID: 463945 [Multi-domain]  Cd Length: 96  Bit Score: 75.68  E-value: 4.70e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819297  182 ILEVGCGVGNTVFPILQTNNnpdLFVYCCDFSATAIELVKTNSEYDPSRCFAFVHDLCDedqsYPMPKDSLDVIVLIFVL 261
Cdd:pfam13649   1 VLDLGCGTGRLTLALARRGG---ARVTGVDLSPEMLERARERAAEAGLNVEFVQGDAED----LPFPDGSFDLVVSSGVL 73

                          90       100
                  ....*....|....*....|...
gi 157819297  262 SAIVPDKMQKAISKLSRLLKPGG 284
Cdd:pfam13649  74 HHLPDPDLEAALREIARVLKPGG 96
Methyltransf_12 pfam08242
Methyltransferase domain; Members of this family are SAM dependent methyltransferases.
 183-285 5.98e-17

Methyltransferase domain; Members of this family are SAM dependent methyltransferases.


Pssm-ID: 400515 [Multi-domain]  Cd Length: 98  Bit Score: 75.48  E-value: 5.98e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819297  183 LEVGCGVGNTVFPILqtNNNPDLFVYCCDFSATAIEL----VKTNSEYDPSRCFAFVHDLCDEDQsypmpkDSLDVIVLI 258
Cdd:pfam08242   1 LEIGCGTGTLLRALL--EALPGLEYTGLDISPAALEAarerLAALGLLNAVRVELFQLDLGELDP------GSFDVVVAS 72

                          90       100
                  ....*....|....*....|....*..
gi 157819297  259 FVLSAIvpDKMQKAISKLSRLLKPGGV 285
Cdd:pfam08242  73 NVLHHL--ADPRAVLRNIRRLLKPGGV 97
UbiE COG2226
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ...
 181-300 1.38e-15

Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis


Pssm-ID: 441828 [Multi-domain]  Cd Length: 143  Bit Score: 73.10  E-value: 1.38e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819297 181 RILEVGCGVGNTVFPILQTNNNpdlfVYCCDFSATAIELVKTNSEYDPSRCFAFVHDLCDedqsYPMPKDSLDVIVLIFV 260
Cdd:COG2226   25 RVLDLGCGTGRLALALAERGAR----VTGVDISPEMLELARERAAEAGLNVEFVVGDAED----LPFPDGSFDLVISSFV 96

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 157819297 261 LSAiVPDKmQKAISKLSRLLKPGGVMLLRDYGRYDMAQLR 300
Cdd:COG2226   97 LHH-LPDP-ERALAEIARVLKPGGRLVVVDFSPPDLAELE 134
SmtA COG0500
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, ...
 181-288 4.11e-14

SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];


Pssm-ID: 440266 [Multi-domain]  Cd Length: 199  Bit Score: 70.33  E-value: 4.11e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819297 181 RILEVGCGVGNTVFPILQTNNNPdlfVYCCDFSATAIEL-VKTNSEYDPSRCFAFVHDLCDEDqsyPMPKDSLDVIVLIF 259
Cdd:COG0500   29 RVLDLGCGTGRNLLALAARFGGR---VIGIDLSPEAIALaRARAAKAGLGNVEFLVADLAELD---PLPAESFDLVVAFG 102

                         90       100
                 ....*....|....*....|....*....
gi 157819297 260 VLSAIVPDKMQKAISKLSRLLKPGGVMLL 288
Cdd:COG0500  103 VLHHLPPEEREALLRELARALKPGGVLLL 131
AdoMet_MTases cd02440
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ...
 181-288 1.43e-13

S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).


Pssm-ID: 100107 [Multi-domain]  Cd Length: 107  Bit Score: 66.30  E-value: 1.43e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819297 181 RILEVGCGVGNTVFPILQtnnNPDLFVYCCDFSATAIELVKTNSEYDPSRCFAFVHdlCDEDQSYPMPKDSLDVIVLIFV 260
Cdd:cd02440    1 RVLDLGCGTGALALALAS---GPGARVTGVDISPVALELARKAAAALLADNVEVLK--GDAEELPPEADESFDVIISDPP 75

                         90       100
                 ....*....|....*....|....*...
gi 157819297 261 LSAIVPDkMQKAISKLSRLLKPGGVMLL 288
Cdd:cd02440   76 LHHLVED-LARFLEEARRLLKPGGVLVL 102
Methyltransf_23 pfam13489
Methyltransferase domain; This family appears to be a methyltransferase domain.
 181-341 2.04e-12

Methyltransferase domain; This family appears to be a methyltransferase domain.


Pssm-ID: 404385 [Multi-domain]  Cd Length: 162  Bit Score: 64.76  E-value: 2.04e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819297  181 RILEVGCGVGNtVFPILQTNNnpdlfvyccdFSATAIELvktnSEYDPSRCFAFVHDLCDEDQSYPMPKDSLDVIVLIFV 260
Cdd:pfam13489  25 RVLDFGCGTGI-FLRLLRAQG----------FSVTGVDP----SPIAIERALLNVRFDQFDEQEAAVPAGKFDVIVAREV 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819297  261 LSAiVPDkMQKAISKLSRLLKPGGVMLLRDYGRYDMAQLRFKKgqclsgNFYVRGDGTRVYFFTQDELDTLFTAAGLEKV 340
Cdd:pfam13489  90 LEH-VPD-PPALLRQIAALLKPGGLLLLSTPLASDEADRLLLE------WPYLRPRNGHISLFSARSLKRLLEEAGFEVV 161


                  .
gi 157819297  341 Q 341
Cdd:pfam13489 162 S 162
Methyltransf_11 pfam08241
Methyltransferase domain; Members of this family are SAM dependent methyltransferases.
 183-288 2.99e-11

Methyltransferase domain; Members of this family are SAM dependent methyltransferases.


Pssm-ID: 462406 [Multi-domain]  Cd Length: 94  Bit Score: 59.22  E-value: 2.99e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819297  183 LEVGCGVGNTVFPILQTNNNpdlfVYCCDFSATAIELVKTNSEYDPsrcFAFVH-DLCDedqsYPMPKDSLDVIVLIFVL 261
Cdd:pfam08241   1 LDVGCGTGLLTELLARLGAR----VTGVDISPEMLELAREKAPREG---LTFVVgDAED----LPFPDNSFDLVLSSEVL 69

                          90       100
                  ....*....|....*....|....*..
gi 157819297  262 SAiVPDkMQKAISKLSRLLKPGGVMLL 288
Cdd:pfam08241  70 HH-VED-PERALREIARVLKPGGILII 94
UbiG COG2227
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and ...
 181-291 4.15e-11

2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 441829 [Multi-domain]  Cd Length: 126  Bit Score: 60.03  E-value: 4.15e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819297 181 RILEVGCGVGNTVFPILQTNNNpdlfVYCCDFSATAIELVKTNSEYDPSRCF-AFVHDLCDEDQSYpmpkdslDVIVLIF 259
Cdd:COG2227   27 RVLDVGCGTGRLALALARRGAD----VTGVDISPEALEIARERAAELNVDFVqGDLEDLPLEDGSF-------DLVICSE 95

                         90       100       110
                 ....*....|....*....|....*....|..
gi 157819297 260 VLSAiVPDkMQKAISKLSRLLKPGGVMLLRDY 291
Cdd:COG2227   96 VLEH-LPD-PAALLRELARLLKPGGLLLLSTP 125
Methyltransf_31 pfam13847
Methyltransferase domain; This family appears to have methyltransferase activity.
 180-336 2.48e-09

Methyltransferase domain; This family appears to have methyltransferase activity.


Pssm-ID: 463998 [Multi-domain]  Cd Length: 150  Bit Score: 55.50  E-value: 2.48e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819297  180 YRILEVGCGVGNTVFpILQTNNNPDLFVYCCDFSATAIELVKTNSEYDPSRCFAFVH-DLCDEDQSYPmpKDSLDVIVLI 258
Cdd:pfam13847   5 MRVLDLGCGTGHLSF-ELAEELGPNAEVVGIDISEEAIEKARENAQKLGFDNVEFEQgDIEELPELLE--DDKFDVVISN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819297  259 FVLSAIvPDKmQKAISKLSRLLKPGGVMLLRDY-----GRYDMAQLRFKKGQCLSGNfyvrgdgtrvyfFTQDELDTLFT 333
Cdd:pfam13847  82 CVLNHI-PDP-DKVLQEILRVLKPGGRLIISDPdslaeLPAHVKEDSTYYAGCVGGA------------ILKKKLYELLE 147


                  ...
gi 157819297  334 AAG 336
Cdd:pfam13847 148 EAG 150
COG4976 COG4976
Predicted methyltransferase, contains TPR repeat [General function prediction only];
181-338 9.90e-09

Predicted methyltransferase, contains TPR repeat [General function prediction only];


Pssm-ID: 444001 [Multi-domain]  Cd Length: 181  Bit Score: 54.62  E-value: 9.90e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819297 181 RILEVGCGVGNTVFPILqtnnnpDLF--VYCCDFSATAIELVKTNSEYDPsrcfAFVHDLCDedqsYPMPKDSLDVIVLI 258
Cdd:COG4976   49 RVLDLGCGTGLLGEALR------PRGyrLTGVDLSEEMLAKAREKGVYDR----LLVADLAD----LAEPDGRFDLIVAA 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819297 259 FVLSAIvpDKMQKAISKLSRLLKPGGVMLlrdygrydmaqlrfkkgqclsgnFYV-RGDGTRVYFFTQDELDTLFTAAGL 337
Cdd:COG4976  115 DVLTYL--GDLAAVFAGVARALKPGGLFI-----------------------FSVeDADGSGRYAHSLDYVRDLLAAAGF 169


                 .
gi 157819297 338 E 338
Cdd:COG4976  170 E 170
Tam COG4106
Trans-aconitate methyltransferase [Energy production and conversion];
181-288 1.09e-08

Trans-aconitate methyltransferase [Energy production and conversion];


Pssm-ID: 443282 [Multi-domain]  Cd Length: 100  Bit Score: 52.13  E-value: 1.09e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819297 181 RILEVGCGVGNTVFPILQtnNNPDLFVYCCDFSATAIELVKTNSeydpSRCFAFVHDLCDEDqsypmPKDSLDVIVLIFV 260
Cdd:COG4106    4 RVLDLGCGTGRLTALLAE--RFPGARVTGVDLSPEMLARARARL----PNVRFVVADLRDLD-----PPEPFDLVVSNAA 72

                         90       100
                 ....*....|....*....|....*...
gi 157819297 261 LSAiVPDkMQKAISKLSRLLKPGGVMLL 288
Cdd:COG4106   73 LHW-LPD-HAALLARLAAALAPGGVLAV 98
Cfa COG2230
Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport ...
 181-290 2.08e-07

Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport and metabolism];


Pssm-ID: 441831 [Multi-domain]  Cd Length: 158  Bit Score: 49.93  E-value: 2.08e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819297 181 RILEVGCGVGNTVFPILQtnnNPDLFVYCCDFSATAIELVKTNSEYDPSRCFAFVHdLCD-----EDQSYpmpkdslDVI 255
Cdd:COG2230   54 RVLDIGCGWGGLALYLAR---RYGVRVTGVTLSPEQLEYARERAAEAGLADRVEVR-LADyrdlpADGQF-------DAI 122

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 157819297 256 VLIFVLSAIVPDKMQKAISKLSRLLKPGGVMLLRD 290
Cdd:COG2230  123 VSIGMFEHVGPENYPAYFAKVARLLKPGGRLLLHT 157
PRK08317 PRK08317
hypothetical protein; Provisional
 181-284 8.47e-07

hypothetical protein; Provisional


Pssm-ID: 181382 [Multi-domain]  Cd Length: 241  Bit Score: 49.55  E-value: 8.47e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819297 181 RILEVGCGVGNTVFpILQTNNNPDLFVYCCDFSATAIELVKTNSEYDPSRCFaFVHDlcDEDQSyPMPKDSLDVIVLIFV 260
Cdd:PRK08317  22 RVLDVGCGPGNDAR-ELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVE-FVRG--DADGL-PFPDGSFDAVRSDRV 96

                         90       100
                 ....*....|....*....|....
gi 157819297 261 LSAIvPDKmQKAISKLSRLLKPGG 284
Cdd:PRK08317  97 LQHL-EDP-ARALAEIARVLRPGG 118
MTS pfam05175
Methyltransferase small domain; This domain is found in ribosomal RNA small subunit ...
 181-288 2.88e-03

Methyltransferase small domain; This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.


Pssm-ID: 428349 [Multi-domain]  Cd Length: 170  Bit Score: 38.34  E-value: 2.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819297  181 RILEVGCGVGntVFPILQTNNNPDLFVYCCDFSATAIELVKTNSEYDPSRCFAFVHDLCDEDQsypmPKDSLDVIVL--- 257
Cdd:pfam05175  34 KVLDLGCGAG--VLGAALAKESPDAELTMVDINARALESARENLAANGLENGEVVASDVYSGV----EDGKFDLIISnpp 107

                          90       100       110
                  ....*....|....*....|....*....|.
gi 157819297  258 IFVLSAIVPDKMQKAISKLSRLLKPGGVMLL 288
Cdd:pfam05175 108 FHAGLATTYNVAQRFIADAKRHLRPGGELWI 138
RsmC COG2813
16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA ...
 181-288 3.91e-03

16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA G1207 methylase RsmC is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 442062 [Multi-domain]  Cd Length: 191  Bit Score: 38.25  E-value: 3.91e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819297 181 RILEVGCGVGntvfPILQT--NNNPDLFVYCCDFSATAIELVKTNSE-YDPSRCFAFVHDLCDedqsyPMPKDSLDVIVL 257
Cdd:COG2813   52 RVLDLGCGYG----VIGLAlaKRNPEARVTLVDVNARAVELARANAAaNGLENVEVLWSDGLS-----GVPDGSFDLILS 122

                         90       100       110
                 ....*....|....*....|....*....|....
gi 157819297 258 ---IFVLSAIVPDKMQKAISKLSRLLKPGGVMLL 288
Cdd:COG2813  123 nppFHAGRAVDKEVAHALIADAARHLRPGGELWL 156
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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