NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|157820007|ref|NP_001100307|]
View 

KH domain-containing protein 3 [Rattus norvegicus]

Protein Classification

FILIA_N_like domain-containing protein( domain architecture ID 11240190)

FILIA_N_like domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
MOEP19 pfam16005
KH-like RNA-binding domain; MOEP19 is a family of mammalian KH-like RNA-binding motifs. The ...
 29-112 4.94e-41

KH-like RNA-binding domain; MOEP19 is a family of mammalian KH-like RNA-binding motifs. The family is expressed during early embryogenesis. It appears to effect an early form of molecular asymmetry within the murine oocyte cytoplasm. The family marks a defined cortical cytoplasmic domain in oocytes and provides evidence for mammalian oocyte polarity and a form of pre-patterning that persists in zygotes and early embryos through the morula stage.


:

Pssm-ID: 464969  Cd Length: 85  Bit Score: 140.47  E-value: 4.94e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007   29 LPKWFHVEYLEDPKKMYVEPTLVEIMFGKDGEHIPHVECTLHVLIHVNVWGPEKQAEILIFGPPNFQKDVAQMLSNVAHF 108
Cdd:pfam16005   2 RPWWFPPEELKDPLVFYLEAWLLELIFGPDGERIPHIEWMSQTLLQVDVVDSEGLAEITIFGRPRYQKRVKKMLLSLASW 81


                  ....
gi 157820007  109 CRMK 112
Cdd:pfam16005  82 HRER 85
rne super family cl35953
ribonuclease E; Reviewed
 140-340 3.57e-08

ribonuclease E; Reviewed


The actual alignment was detected with superfamily member PRK10811:

Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 55.82  E-value: 3.57e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  140 VKVRDAATQVAPVQVRDAAIQPAPVkvrdAATQVAPVQVHEVATQPVPVQVRDAATQPVPVRVRDAATQPVPVRVRDAAT 219
Cdd:PRK10811  841 VWIRYPVVRPQDVQVEEQREAEEVQ----VQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTH 916

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  220 QPVPVRVRDAATQPVpvrvrdaATEPVPVQVRDAAtQPAPVQVRDAATQPA--PVQVRDAATQPAPVQVRDAATQPAPVQ 297
Cdd:PRK10811  917 PEVIAAPVTEQPQVI-------TESDVAVAQEVAE-HAEPVVEPQDETADIeeAAETAEVVVAEPEVVAQPAAPVVAEVA 988

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 157820007  298 VRDAATQPAPVQVRDAATQPAPVQVRDAA----TQPAPVQVREAATQ 340
Cdd:PRK10811  989 AEVETVTAVEPEVAPAQVPEATVEHNHATapmtRAPAPEYVPEAPRH 1035
 
Name Accession Description Interval E-value
MOEP19 pfam16005
KH-like RNA-binding domain; MOEP19 is a family of mammalian KH-like RNA-binding motifs. The ...
 29-112 4.94e-41

KH-like RNA-binding domain; MOEP19 is a family of mammalian KH-like RNA-binding motifs. The family is expressed during early embryogenesis. It appears to effect an early form of molecular asymmetry within the murine oocyte cytoplasm. The family marks a defined cortical cytoplasmic domain in oocytes and provides evidence for mammalian oocyte polarity and a form of pre-patterning that persists in zygotes and early embryos through the morula stage.


Pssm-ID: 464969  Cd Length: 85  Bit Score: 140.47  E-value: 4.94e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007   29 LPKWFHVEYLEDPKKMYVEPTLVEIMFGKDGEHIPHVECTLHVLIHVNVWGPEKQAEILIFGPPNFQKDVAQMLSNVAHF 108
Cdd:pfam16005   2 RPWWFPPEELKDPLVFYLEAWLLELIFGPDGERIPHIEWMSQTLLQVDVVDSEGLAEITIFGRPRYQKRVKKMLLSLASW 81


                  ....
gi 157820007  109 CRMK 112
Cdd:pfam16005  82 HRER 85
FILIA_N_like cd12795
FILIA-N KH-like domain; This group contains the N-terminal atypical KH domain of FILIA and ...
 12-124 6.45e-33

FILIA-N KH-like domain; This group contains the N-terminal atypical KH domain of FILIA and related domains. FILIA is expressed in oocytes and embryo, and contains an atypical KH domain at the N-terminus with an N-terminal extension that interacts with RNA. RNA-binding may mediate RNA transcript regulation in oogenesis and embryogenesis. FILIA-N differs from typical KH domains by forming a stable dimer in solution and crystal structure.


Pssm-ID: 240613 [Multi-domain]  Cd Length: 114  Bit Score: 120.12  E-value: 6.45e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  12 QLKHKLGKAYEIVGEPRLPKWFHVEYLEDPKKMYVEPTLVEIMFGKDGEHIPHVECTLHVLIHVNVWGPEKQAEILIFGP 91
Cdd:cd12795    1 QLREKVPMSMEVLGLVKRPWWFRPEDLKDPLVLYVEAWLLEKIFGPDGALIPGIEWESQTLLQVEAWDSSGLAEITVFGR 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 157820007  92 PNFQKDVAQMLSNVAHFCRMKLMEK-EALEAGVE 124
Cdd:cd12795   81 PRARRRVKRMLLNLAAWHREHRARGrEKLEELEE 114
rne PRK10811
ribonuclease E; Reviewed
 140-340 3.57e-08

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 55.82  E-value: 3.57e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  140 VKVRDAATQVAPVQVRDAAIQPAPVkvrdAATQVAPVQVHEVATQPVPVQVRDAATQPVPVRVRDAATQPVPVRVRDAAT 219
Cdd:PRK10811  841 VWIRYPVVRPQDVQVEEQREAEEVQ----VQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTH 916

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  220 QPVPVRVRDAATQPVpvrvrdaATEPVPVQVRDAAtQPAPVQVRDAATQPA--PVQVRDAATQPAPVQVRDAATQPAPVQ 297
Cdd:PRK10811  917 PEVIAAPVTEQPQVI-------TESDVAVAQEVAE-HAEPVVEPQDETADIeeAAETAEVVVAEPEVVAQPAAPVVAEVA 988

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 157820007  298 VRDAATQPAPVQVRDAATQPAPVQVRDAA----TQPAPVQVREAATQ 340
Cdd:PRK10811  989 AEVETVTAVEPEVAPAQVPEATVEHNHATapmtRAPAPEYVPEAPRH 1035
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 141-354 2.79e-04

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 43.49  E-value: 2.79e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  141 KVRDAATQVapvQVRDAAIQPAPvkvRDAATQVAPVQVHEVATQPVPVQvrdAATQPVPVRV---RDAATQPVPVRVRDA 217
Cdd:pfam09770  90 KVSDAIEEE---QVRFNRQQPAA---RAAQSSAQPPASSLPQYQYASQQ---SQQPSKPVRTgyeKYKEPEPIPDLQVDA 160

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  218 ATQPVPVRVRDAAT---QPVPVRVRDAAT-------EPVPVQVRDAATQPAPVQVRDAATQPA--PVQVRDAATQPAPVQ 285
Cdd:pfam09770 161 SLWGVAPKKAAAPApapQPAAQPASLPAPsrkmmslEEVEAAMRAQAKKPAQQPAPAPAQPPAapPAQQAQQQQQFPPQI 240

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157820007  286 VRDAATQPAPVQVRDAATQPAPVQV--RDAATQPAPvqvrdaaTQPAPVQVREAATQQTPVEVADDTQLVQ 354
Cdd:pfam09770 241 QQQQQPQQQPQQPQQHPGQGHPVTIlqRPQSPQPDP-------AQPSIQPQAQQFHQQPPPVPVQPTQILQ 304
FimV COG3170
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
142-357 9.48e-04

Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];


Pssm-ID: 442403 [Multi-domain]  Cd Length: 508  Bit Score: 41.32  E-value: 9.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 142 VRDAATQVAPVQVRDAAIQPAPvkvRDAATQVAPVQVHEVATQPVPVQVRDAATQPVPVR----VRDAATQPVPVRVRDA 217
Cdd:COG3170   97 VREYTLLLDPPAYAAAAAAPAA---APAPAPAAPAAAAAAADQPAAEAAPAASGEYYPVRpgdtLWSIAARPVRPSSGVS 173

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 218 ATQPVPVRVR---DAATQPVPVRVRDAATEPVPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPA 294
Cdd:COG3170  174 LDQMMVALYRanpDAFIDGNINRLKAGAVLRVPAAEEVAALSPAEARQEVQAQSADWAAYRARLAAAVEPAPAAAAPAAP 253

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 157820007 295 PVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVREAATQQTPVEVADDTQLVQLKA 357
Cdd:COG3170  254 PAAAAAAGPVPAAAEDTLSPEVTAAAAAEEADALPEAAAELAERLAALEAQLAELQRLLALKN 316
 
Name Accession Description Interval E-value
MOEP19 pfam16005
KH-like RNA-binding domain; MOEP19 is a family of mammalian KH-like RNA-binding motifs. The ...
 29-112 4.94e-41

KH-like RNA-binding domain; MOEP19 is a family of mammalian KH-like RNA-binding motifs. The family is expressed during early embryogenesis. It appears to effect an early form of molecular asymmetry within the murine oocyte cytoplasm. The family marks a defined cortical cytoplasmic domain in oocytes and provides evidence for mammalian oocyte polarity and a form of pre-patterning that persists in zygotes and early embryos through the morula stage.


Pssm-ID: 464969  Cd Length: 85  Bit Score: 140.47  E-value: 4.94e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007   29 LPKWFHVEYLEDPKKMYVEPTLVEIMFGKDGEHIPHVECTLHVLIHVNVWGPEKQAEILIFGPPNFQKDVAQMLSNVAHF 108
Cdd:pfam16005   2 RPWWFPPEELKDPLVFYLEAWLLELIFGPDGERIPHIEWMSQTLLQVDVVDSEGLAEITIFGRPRYQKRVKKMLLSLASW 81


                  ....
gi 157820007  109 CRMK 112
Cdd:pfam16005  82 HRER 85
FILIA_N_like cd12795
FILIA-N KH-like domain; This group contains the N-terminal atypical KH domain of FILIA and ...
 12-124 6.45e-33

FILIA-N KH-like domain; This group contains the N-terminal atypical KH domain of FILIA and related domains. FILIA is expressed in oocytes and embryo, and contains an atypical KH domain at the N-terminus with an N-terminal extension that interacts with RNA. RNA-binding may mediate RNA transcript regulation in oogenesis and embryogenesis. FILIA-N differs from typical KH domains by forming a stable dimer in solution and crystal structure.


Pssm-ID: 240613 [Multi-domain]  Cd Length: 114  Bit Score: 120.12  E-value: 6.45e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  12 QLKHKLGKAYEIVGEPRLPKWFHVEYLEDPKKMYVEPTLVEIMFGKDGEHIPHVECTLHVLIHVNVWGPEKQAEILIFGP 91
Cdd:cd12795    1 QLREKVPMSMEVLGLVKRPWWFRPEDLKDPLVLYVEAWLLEKIFGPDGALIPGIEWESQTLLQVEAWDSSGLAEITVFGR 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 157820007  92 PNFQKDVAQMLSNVAHFCRMKLMEK-EALEAGVE 124
Cdd:cd12795   81 PRARRRVKRMLLNLAAWHREHRARGrEKLEELEE 114
KH-I_KHDC1_like cd22440
type I K homology (KH) RNA-binding domain found in KHDC1-like family; The KHDC1-like family ...
 38-105 1.07e-22

type I K homology (KH) RNA-binding domain found in KHDC1-like family; The KHDC1-like family corresponds to a group of structurally related proteins characterized by an atypical RNA-binding KH domain. They are unique to eutherian mammals and specifically expressed in oocytes and/or embryonic stem cells. Family members include KH homology domain-containing protein 1 (KHDC1), KHDC1-like protein (KHDC1L), KHDC3-like protein (KHDC3L, also called ES cell-associated transcript 1 protein or ECAT1), developmental pluripotency-associated 5 protein (DPPA5, also called embryonal stem cell-specific gene 1 protein or ESG-1), Oocyte-expressed protein (OOEP, also called KH homology domain-containing protein 2 or KHDC2, or Oocyte- and embryo-specific protein 19 or OEP19). KHDC3L is essential for human oocyte maturation and pre-implantation development of the resulting embryos. DPPA5 is involved in the maintenance of embryonic stem (ES) cell pluripotency. OOEP plays an essential role for zygotes to progress beyond the first embryonic cell divisions.


Pssm-ID: 411868  Cd Length: 68  Bit Score: 90.82  E-value: 1.07e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 157820007  38 LEDPKKMYVEPTLVEIMFGKDGEHIPHVECTLHVLIHVNVWGPEKQAEILIFGPPNFQKDVAQMLSNV 105
Cdd:cd22440    1 LQDPSVFHVEARLLEKIFGPDGTLIPHLEQESHTLIHVDRWDPEGKAEITIFGPPRYRQRAKWMLQCL 68
rne PRK10811
ribonuclease E; Reviewed
 140-340 3.57e-08

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 55.82  E-value: 3.57e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  140 VKVRDAATQVAPVQVRDAAIQPAPVkvrdAATQVAPVQVHEVATQPVPVQVRDAATQPVPVRVRDAATQPVPVRVRDAAT 219
Cdd:PRK10811  841 VWIRYPVVRPQDVQVEEQREAEEVQ----VQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTH 916

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  220 QPVPVRVRDAATQPVpvrvrdaATEPVPVQVRDAAtQPAPVQVRDAATQPA--PVQVRDAATQPAPVQVRDAATQPAPVQ 297
Cdd:PRK10811  917 PEVIAAPVTEQPQVI-------TESDVAVAQEVAE-HAEPVVEPQDETADIeeAAETAEVVVAEPEVVAQPAAPVVAEVA 988

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 157820007  298 VRDAATQPAPVQVRDAATQPAPVQVRDAA----TQPAPVQVREAATQ 340
Cdd:PRK10811  989 AEVETVTAVEPEVAPAQVPEATVEHNHATapmtRAPAPEYVPEAPRH 1035
rne PRK10811
ribonuclease E; Reviewed
 173-345 3.70e-08

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 55.82  E-value: 3.70e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  173 VAPVQVHEVATQPVPVQVrdaatQPVPVrvrdAATQPVPVRVRDAATQPVPVRVRDAATQPVpVRVRDAATEPVPVQVRD 252
Cdd:PRK10811  847 VVRPQDVQVEEQREAEEV-----QVQPV----VAEVPVAAAVEPVVSAPVVEAVAEVVEEPV-VVAEPQPEEVVVVETTH 916

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  253 AATQPAPV----QVRDAATQPAPVQVRDAATQPAPVQVRDAATQPApVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQ 328
Cdd:PRK10811  917 PEVIAAPVteqpQVITESDVAVAQEVAEHAEPVVEPQDETADIEEA-AETAEVVVAEPEVVAQPAAPVVAEVAAEVETVT 995

                         170
                  ....*....|....*..
gi 157820007  329 PAPVQVREAATQQTPVE 345
Cdd:PRK10811  996 AVEPEVAPAQVPEATVE 1012
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
150-338 6.09e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 54.86  E-value: 6.09e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 150 APVQVRDAAIQPAPVKVRDAATQVAPVQVHEVATQPVPVQVRdAATQPVPVRVRDAATQPVPVRVRDAATqpvpvrvrDA 229
Cdd:PRK07003 372 VPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPK-AAAAAAATRAEAPPAAPAPPATADRGD--------DA 442

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 230 ATQPVPVRVRDAATEPVPVQVRDAATQPAPVQVRDAAtqPAPVQVRDAATQPAPvqvRDAATQPAPVQVRDAATQPAPVQ 309
Cdd:PRK07003 443 ADGDAPVPAKANARASADSRCDERDAQPPADSGSASA--PASDAPPDAAFEPAP---RAAAPSAATPAAVPDARAPAAAS 517

                        170       180
                 ....*....|....*....|....*....
gi 157820007 310 VRDAATQPAPVQVRdaATQPAPVQVREAA 338
Cdd:PRK07003 518 REDAPAAAAPPAPE--ARPPTPAAAAPAA 544
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 156-351 1.33e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 53.84  E-value: 1.33e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 156 DAAIQPAPVKVRDAATQVAPVQVhEVATQPVPVQVRDAATQPVPVRVRDAATQPVPVRVRDAATQPVPVRVRDAATQPVP 235
Cdd:PRK07764 596 GGEGPPAPASSGPPEEAARPAAP-AAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAG 674

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 236 VRVRDAATE-PVPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAP-VQVRDAATQPAPVQVRDA 313
Cdd:PRK07764 675 GAAPAAPPPaPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAAdDPVPLPPEPDDPPDPAGA 754

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 157820007 314 ATQPAPVQVRDAATQPAPVQvREAATQQTPVEVADDTQ 351
Cdd:PRK07764 755 PAQPPPPPAPAPAAAPAAAP-PPSPPSEEEEMAEDDAP 791
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 129-340 2.64e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 53.07  E-value: 2.64e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 129 AASKATTQPTPVKVRDAATQVAPVQVrDAAIQPAPVKVRDAATQVAPVQVHEVATQPVPVQVRDAATQPVPVRVRDAATQ 208
Cdd:PRK07764 593 GAAGGEGPPAPASSGPPEEAARPAAP-AAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPA 671

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 209 PVPVRVRDA-ATQPVPVRVRDAATQPVPVRVRDAATEPVPVQVRDAATQPAPVQVRDAATQPAP-VQVRDAATQPAPVQV 286
Cdd:PRK07764 672 KAGGAAPAApPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAAdDPVPLPPEPDDPPDP 751

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 157820007 287 RDAATQPAPVQVRDAATQPAPVQvRDAATQPAPVQVRDAATQPAPVQVREAATQ 340
Cdd:PRK07764 752 AGAPAQPPPPPAPAPAAAPAAAP-PPSPPSEEEEMAEDDAPSMDDEDRRDAEEV 804
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
121-334 3.46e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 52.54  E-value: 3.46e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 121 AGVERRLMAASKATTQPTPVKVR-DAATQVAPVQVRDAAIQPAPVKVRDAATqvapvqvhEVATQPVPVQVRDAATQPVP 199
Cdd:PRK07003 389 AAVGASAVPAVTAVTGAAGAALApKAAAAAAATRAEAPPAAPAPPATADRGD--------DAADGDAPVPAKANARASAD 460

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 200 VRVRDAATQPVP-VRVRDAATQPVPVRVRDAATQPVpvrvrDAATEPVPVQVRDAATqPAPVQVRDAATQPAPVQVRdaA 278
Cdd:PRK07003 461 SRCDERDAQPPAdSGSASAPASDAPPDAAFEPAPRA-----AAPSAATPAAVPDARA-PAAASREDAPAAAAPPAPE--A 532

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 279 TQPAPVQVRDAATQ---PAPVQV-RDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQV 334
Cdd:PRK07003 533 RPPTPAAAAPAARAggaAAALDVlRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRV 592
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
154-343 1.25e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 51.00  E-value: 1.25e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 154 VRDAAIQPAPVKVRDAATQVAPVQVHEVatqPVPVQVRDAATQPVPVRVRDAATQPVPVRVRDAATQPVPVRVRDAAT-Q 232
Cdd:PRK07003 353 LRMLAFEPAVTGGGAPGGGVPARVAGAV---PAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPaA 429

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 233 PVPVRVRDAATEPvpvqvrdaATQPAPVQVRDAATQPAPVQVRDAATQPAP-VQVRDAATQPAPVQVRDAATQPApvqvr 311
Cdd:PRK07003 430 PAPPATADRGDDA--------ADGDAPVPAKANARASADSRCDERDAQPPAdSGSASAPASDAPPDAAFEPAPRA----- 496

                        170       180       190
                 ....*....|....*....|....*....|..
gi 157820007 312 DAATQPAPVQVRDAATQPAPVQVREAATQQTP 343
Cdd:PRK07003 497 AAPSAATPAAVPDARAPAAASREDAPAAAAPP 528
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
145-348 1.85e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 50.26  E-value: 1.85e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 145 AATQVAPV-QVRDAAIQPAPVKVRDAATQVAPVQVHEVATQPVPVQVRDAATQPVPVRVRDAATQPVPVRVRDAATQPVP 223
Cdd:PRK12323 375 ATAAAAPVaQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAP 454

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 224 VRVRDAATQPVPVRVRD-AATEPVPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAA 302
Cdd:PRK12323 455 AAAPAAAARPAAAGPRPvAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADP 534

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 157820007 303 TQPAPVQVRDAATQPAPVQVRDAATQPAPVQVREAATQQTPVEVAD 348
Cdd:PRK12323 535 DDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGD 580
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 222-348 2.06e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 49.98  E-value: 2.06e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 222 VPVRVRDAATQPVPVRVRDAATEPVPVQvrdAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAA-TQPAPVQVRD 300
Cdd:PRK07764 385 LGVAGGAGAPAAAAPSAAAAAPAAAPAP---AAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAgGAPSPPPAAA 461

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 157820007 301 AATQPAPVQVRDAATQPAPVQVRDA--ATQPAPVQVREAATQQTPVEVAD 348
Cdd:PRK07764 462 PSAQPAPAPAAAPEPTAAPAPAPPAapAPAAAPAAPAAPAAPAGADDAAT 511
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 211-357 2.44e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 49.86  E-value: 2.44e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 211 PVRVRDAATQPvPVRVRDAATQPVPVRVRDAATEPVPVQVRdAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAA 290
Cdd:PRK07994 361 PAAPLPEPEVP-PQSAAPAASAQATAAPTAAVAPPQAPAVP-PPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKA 438

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157820007 291 TQPAPVQVRDAATQPAPVQvRDAATQPAPVQVRDAATQPAPVQVReaATQQTPVEVADDTQLVQLKA 357
Cdd:PRK07994 439 KKSEPAAASRARPVNSALE-RLASVRPAPSALEKAPAKKEAYRWK--ATNPVEVKKEPVATPKALKK 502
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
210-362 2.73e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 49.85  E-value: 2.73e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 210 VPVRVRDAATQPVPVRVRDAATQPVPVRvrDAATEPVPVQVRDAATQPAPVQVRDAAT-QPAPVQVRDAATQPAPVQVRD 288
Cdd:PRK07003 372 VPARVAGAVPAPGARAAAAVGASAVPAV--TAVTGAAGAALAPKAAAAAAATRAEAPPaAPAPPATADRGDDAADGDAPV 449

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 157820007 289 AATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVREAATQQTPVEVADDTQLVQLKAGEAFA 362
Cdd:PRK07003 450 PAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPA 523
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 226-363 2.89e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 49.71  E-value: 2.89e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 226 VRDAATQPVPVRVRDAATEPVPVQVRDAATQPAPVQVrdAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQP 305
Cdd:PRK14951 382 ARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPP--AAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPET 459

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 157820007 306 APVQVRDAATQPAPVQVRDAATQPAPVqvREAATQQTPVEVADDTQLVQLKAGEAFAQ 363
Cdd:PRK14951 460 VAIPVRVAPEPAVASAAPAPAAAPAAA--RLTPTEEGDVWHATVQQLAAAEAITALAR 515
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 199-339 3.03e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 49.48  E-value: 3.03e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 199 PVRVRDAATQPvPVRVRDAATQPVPVRVRDAATQPVPVRVRdAATEPVPVQVRDAATQPAPVQVRDAATQPAPVQVRDAA 278
Cdd:PRK07994 361 PAAPLPEPEVP-PQSAAPAASAQATAAPTAAVAPPQAPAVP-PPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKA 438

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157820007 279 TQPAPVQVRDAATQPAPVQvRDAATQPAPVQVRDAATQPAPVQVRdaATQPAPVQVREAAT 339
Cdd:PRK07994 439 KKSEPAAASRARPVNSALE-RLASVRPAPSALEKAPAKKEAYRWK--ATNPVEVKKEPVAT 496
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 214-358 6.60e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 48.56  E-value: 6.60e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 214 VRDAATQPVPVRVRDAATQPVPVRVRDAATEPVPVQVrdAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQP 293
Cdd:PRK14951 382 ARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPP--AAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPET 459

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 294 APVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVREAATQQTPV-----EVADDTQLVQLKAG 358
Cdd:PRK14951 460 VAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDVWHATVQQLAAAEAItalarELALQSELVARDGD 529
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 181-370 1.18e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 47.55  E-value: 1.18e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 181 VATQPVPVQVRDAATQPVPVRVRDAATQPVPVRVRDAATQPVPVRVRDAATQPVPVRVRDAATEPVPVQVRDAATQPAPV 260
Cdd:PRK07994 365 LPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPA 444

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 261 QVRDAATQPAPVQvRDAATQPAPVQVRDAATQPAPVQVRdaATQPAPVQVRDAATQPAPVQVRDAATQPAPVQ--VREAA 338
Cdd:PRK07994 445 AASRARPVNSALE-RLASVRPAPSALEKAPAKKEAYRWK--ATNPVEVKKEPVATPKALKKALEHEKTPELAAklAAEAI 521

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 157820007 339 TQQTPVEVADDTQL----VQLKAGEAFAQHTSGKVH 370
Cdd:PRK07994 522 ERDPWAALVSQLGLpglvEQLALNAWKEEHDNGEVC 557
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 225-357 1.28e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 47.50  E-value: 1.28e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 225 RVRDAATQPVPVRVRDAATEPVPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATqPAPVQVRDAATQ 304
Cdd:PRK14950 342 RTTSYGQLPLELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETAT-PPPVPPRPVAPP 420

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 157820007 305 --PAPVQVRDAATQPAPVQVRDAATQPAPVQVREAATqqtpveVADDTQLVQLKA 357
Cdd:PRK14950 421 vpHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKAL------IADGDVLEQLEA 469
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 126-285 1.95e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 46.78  E-value: 1.95e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 126 RLMAASKATTQPTPVkVRDAATQVAPVQ----VRDAAIQPAPVKVRDAATQVAPVQVHEVATQPVPVQVRDAATQPVPVR 201
Cdd:PRK07994 355 RMLAFHPAAPLPEPE-VPPQSAAPAASAqataAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQ 433

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 202 VRDAATQPVPVrvrdAATQPVPVRV---RDAATQPVPVRVRDAATEPVPVQVRdaATQPAPVQVRDAATQPAPVQVRDAA 278
Cdd:PRK07994 434 GATKAKKSEPA----AASRARPVNSaleRLASVRPAPSALEKAPAKKEAYRWK--ATNPVEVKKEPVATPKALKKALEHE 507


                 ....*..
gi 157820007 279 TQPAPVQ 285
Cdd:PRK07994 508 KTPELAA 514
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
129-350 2.52e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 46.79  E-value: 2.52e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 129 AASKATTQPTPVKVRDAATQVAPVQVRDAAIQPAPVKVRDAATQVAP--VQVHEVATQPVPVQVRDAATQPVPVRVRDAA 206
Cdd:PRK12323 384 QPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPeaLAAARQASARGPGGAPAPAPAPAAAPAAAAR 463

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 207 TQPVPVRVRdAATQPVPVRVRDAATQPVPVRVRDAATEPVPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQV 286
Cdd:PRK12323 464 PAAAGPRPV-AAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLA 542

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 157820007 287 RDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRD----AATQPAPVQVREAATQQTPVEVADDT 350
Cdd:PRK12323 543 PAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDwpalAARLPVRGLAQQLARQSELAGVEGDT 610
rne PRK10811
ribonuclease E; Reviewed
 140-373 2.69e-05

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 46.57  E-value: 2.69e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  140 VKVRDAATQ--VAPVQVRDAAIQPAPVKVRDAATQVAPVQVHEVATQPVPVQVRDAATQ-------------PVPVRV-- 202
Cdd:PRK10811  729 VRIEQSVAEeaVAPVVEETVAAEPVVQEVPAPRTELVKVPLPVVAQTAPEQDEENNAENrdnngmprrsrrsPRHLRVsg 808

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  203 ------RDA--ATQ-PVP--------------VRVRDAATQPVPVRVRDAATQPVPVRVRDAATEPVPVQVRDAATQPAP 259
Cdd:PRK10811  809 qrrrryRDEryPTQsPMPltvacaspemasgkVWIRYPVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV 888

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  260 VQVrdAATQPAPVQVRDAAtqpAPVQVRDAATQPAPVQVrDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVREAAT 339
Cdd:PRK10811  889 EAV--AEVVEEPVVVAEPQ---PEEVVVVETTHPEVIAA-PVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEA 962

                         250       260       270
                  ....*....|....*....|....*....|....
gi 157820007  340 QQTPVEVADDTQLVQLKAGEAFAQHTSGKVHQDV 373
Cdd:PRK10811  963 AETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTA 996
rne PRK10811
ribonuclease E; Reviewed
 123-304 3.97e-05

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 46.19  E-value: 3.97e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  123 VERRLMAASKATTQPTPVKVRDAATQVAPVQVRDAAIQPAPVKVrdaATQVAPVQVHEVATQPVPVQVrDAATQPVPVrv 202
Cdd:PRK10811  858 QREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVV---AEPQPEEVVVVETTHPEVIAA-PVTEQPQVI-- 931

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  203 rDAATQPVPVRVRDAATQPVPVRVRDAATQPVPVRVRDAATEPvPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPA 282
Cdd:PRK10811  932 -TESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEP-EVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEA 1009

                         170       180
                  ....*....|....*....|....*.
gi 157820007  283 PVQVRDAA----TQPAPVQVRDAATQ 304
Cdd:PRK10811 1010 TVEHNHATapmtRAPAPEYVPEAPRH 1035
PHA03378 PHA03378
EBNA-3B; Provisional
 131-343 4.90e-05

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 45.83  E-value: 4.90e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 131 SKATTQPTPVKVRDAATQVAPVQVRDAAIQPAPVKVRDAATQVAPVQVHEVATQPVPVQVRDAATQPVPVRVRDA-ATQP 209
Cdd:PHA03378 610 TTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTMlPIQW 689

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 210 VPVRVRDAATQPVPVRVRDAAtqPVPVRVRDAATEPV--PVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVR 287
Cdd:PHA03378 690 APGTMQPPPRAPTPMRPPAAP--PGRAQRPAAATGRArpPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPP 767

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 157820007 288 DAAT-QPAPVQVRDAAtqPAPVQVRDAAtqPAPVQVRDAATQPAPVQVREAATQQTP 343
Cdd:PHA03378 768 AAAPgAPTPQPPPQAP--PAPQQRPRGA--PTPQPPPQAGPTSMQLMPRAAPGQQGP 820
PHA03247 PHA03247
large tegument protein UL36; Provisional
 130-359 6.13e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.70  E-value: 6.13e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  130 ASKATTQPTPVKVRDAATQVAPVQVRDAAIQPAPVKVRDAATQVAPVQVHEVATQPVPVQVRDAATQPVPVrVRDAATQP 209
Cdd:PHA03247 2730 QASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPS-PWDPADPP 2808

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  210 VPVRVRDAAtqpVPVRVRDAATQPVPVRVRDAA--TEPVPVQ--------------VRDAATQPAPVQVRDAATQPAPVQ 273
Cdd:PHA03247 2809 AAVLAPAAA---LPPAASPAGPLPPPTSAQPTAppPPPGPPPpslplggsvapggdVRRRPPSRSPAAKPAAPARPPVRR 2885

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  274 VRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVREAATQQTPVEVADDTQLV 353
Cdd:PHA03247 2886 LARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLG 2965


                  ....*.
gi 157820007  354 QLKAGE 359
Cdd:PHA03247 2966 ALVPGR 2971
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 213-319 6.97e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 45.19  E-value: 6.97e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 213 RVRDAATQPVPVRVRDAATQPVPVRVRDAATEPVPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATqPAPVQVRDAATQ 292
Cdd:PRK14950 342 RTTSYGQLPLELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETAT-PPPVPPRPVAPP 420

                         90       100
                 ....*....|....*....|....*....
gi 157820007 293 --PAPVQVRDAATQPAPVQVRDAATQPAP 319
Cdd:PRK14950 421 vpHTPESAPKLTRAAIPVDEKPKYTPPAP 449
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
120-331 7.54e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 45.23  E-value: 7.54e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 120 EAGVERRLMAASKATTQPTPVKVRDAATQVAPVQVRDAAIQPAPVKVRDAATQVAPVQVHEVATQPVPVQVRDAATQPVP 199
Cdd:PRK07003 413 KAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEP 492

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 200 VRVRDAATQPVPVRVRDAATQPVPVRVRDAATQPVPVRVRDAATEPVPVQVRDAATQPAPVQV-RDAATQPAPVQVRDAA 278
Cdd:PRK07003 493 APRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVlRNAGMRVSSDRGARAA 572

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 157820007 279 TQPAPVQVRDAATQPAP----VQVRDAATQPAPVQVRDAATQPAPvQVRDAATQPAP 331
Cdd:PRK07003 573 AAAKPAAAPAAAPKPAAprvaVQVPTPRARAATGDAPPNGAARAE-QAAESRGAPPP 628
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 198-337 1.04e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.59  E-value: 1.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 198 VPVRVRDAATQPVPVRVRDAATQPVPVRVRDAAtQPVPVRVRDAATEPVPvqvrdaATQPAPVQVRDAATQPAPVQVRDA 277
Cdd:PRK07764 385 LGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAP-AAAAAPAPAAAPQPAP------APAPAPAPPSPAGNAPAGGAPSPP 457

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 278 AtQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPvQVREA 337
Cdd:PRK07764 458 P-AAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAA-TLRER 515
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 120-241 1.81e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.93  E-value: 1.81e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 120 EAGVERRLMAASKATTQP---TPVKVRDAATQVAPVQVRDAAIQPAPVKVRDAATQVAPVQVHEVATQPVPVQVRDAATQ 196
Cdd:PRK14951 367 AAAAEAAAPAEKKTPARPeaaAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 157820007 197 PVPVRVRDAATQPVPVRVRDAATQPVPVRVRDAATQPVPVRVRDA 241
Cdd:PRK14951 447 LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPT 491
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 186-328 2.31e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.44  E-value: 2.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 186 VPVQVRDAATQPVPVRVRDAATQPVPVRVRDAAtQPVPVRVRDAATQPVPvRVRDAATEPVPVQVRDAATQPAPVQVRDA 265
Cdd:PRK07764 385 LGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAP-AAAAAPAPAAAPQPAP-APAPAPAPPSPAGNAPAGGAPSPPPAAAP 462

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 157820007 266 ATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQ 328
Cdd:PRK07764 463 SAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRERWPEILAAVPK 525
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 201-307 2.41e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 43.26  E-value: 2.41e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 201 RVRDAATQPVPVRVRDAATQPVPVRVRDAATQPVPVRVRDAATEPVPVQVRDAATQPAPVQVRDAATqPAPVQVRDAATQ 280
Cdd:PRK14950 342 RTTSYGQLPLELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETAT-PPPVPPRPVAPP 420

                         90       100
                 ....*....|....*....|....*....
gi 157820007 281 --PAPVQVRDAATQPAPVQVRDAATQPAP 307
Cdd:PRK14950 421 vpHTPESAPKLTRAAIPVDEKPKYTPPAP 449
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 141-354 2.79e-04

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 43.49  E-value: 2.79e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  141 KVRDAATQVapvQVRDAAIQPAPvkvRDAATQVAPVQVHEVATQPVPVQvrdAATQPVPVRV---RDAATQPVPVRVRDA 217
Cdd:pfam09770  90 KVSDAIEEE---QVRFNRQQPAA---RAAQSSAQPPASSLPQYQYASQQ---SQQPSKPVRTgyeKYKEPEPIPDLQVDA 160

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  218 ATQPVPVRVRDAAT---QPVPVRVRDAAT-------EPVPVQVRDAATQPAPVQVRDAATQPA--PVQVRDAATQPAPVQ 285
Cdd:pfam09770 161 SLWGVAPKKAAAPApapQPAAQPASLPAPsrkmmslEEVEAAMRAQAKKPAQQPAPAPAQPPAapPAQQAQQQQQFPPQI 240

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157820007  286 VRDAATQPAPVQVRDAATQPAPVQV--RDAATQPAPvqvrdaaTQPAPVQVREAATQQTPVEVADDTQLVQ 354
Cdd:pfam09770 241 QQQQQPQQQPQQPQQHPGQGHPVTIlqRPQSPQPDP-------AQPSIQPQAQQFHQQPPPVPVQPTQILQ 304
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 202-328 3.26e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.16  E-value: 3.26e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 202 VRDAATQPVPVRVRDAATQPVPVRVRDAATQPVPVRVrdAATEPVPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQP 281
Cdd:PRK14951 382 ARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPP--AAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPET 459

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 157820007 282 APVQVRdaaTQPAPvQVRDAATQPAPVQVRDAATQPAPVQVRDAATQ 328
Cdd:PRK14951 460 VAIPVR---VAPEP-AVASAAPAPAAAPAAARLTPTEEGDVWHATVQ 502
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 178-283 3.36e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 42.87  E-value: 3.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 178 VHEVATQPVPVQVRDAATQPVPVRVRDAATQPVPVRVRDAATQPVPVRVRDAATQPVPVRVRDAATePVPVQVRDAATQ- 256
Cdd:PRK14950 343 TTSYGQLPLELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETAT-PPPVPPRPVAPPv 421

                         90       100
                 ....*....|....*....|....*...
gi 157820007 257 -PAPVQVRDAATQPAPVQVRDAATQPAP 283
Cdd:PRK14950 422 pHTPESAPKLTRAAIPVDEKPKYTPPAP 449
PHA03247 PHA03247
large tegument protein UL36; Provisional
 129-343 4.02e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.00  E-value: 4.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  129 AASKATTQPTPVKVRDAATQVAPVQvRDAAIQPAPVKVRDAA--TQVAPVQVHEVATQPVPVQVRDAATQPVPVRVRDAA 206
Cdd:PHA03247 2777 AGPPRRLTRPAVASLSESRESLPSP-WDPADPPAAVLAPAAAlpPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGS 2855

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  207 TQP-VPVRVRDAATQPVPVrvrdaATQPVPVRVRDAATEPVPVQVRDAAT---QPAPVQVRDAATQPAPVQVRDAATQPA 282
Cdd:PHA03247 2856 VAPgGDVRRRPPSRSPAAK-----PAAPARPPVRRLARPAVSRSTESFALppdQPERPPQPQAPPPPQPQPQPPPPPQPQ 2930

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 157820007  283 PVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQ---PAPVQVREAATQQTP 343
Cdd:PHA03247 2931 PPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRfrvPQPAPSREAPASSTP 2994
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 248-351 5.84e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.28  E-value: 5.84e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 248 VQVRDAATQPAPVQVRDAATQPAPVQVRdAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAA-TQPAPVQVRDAA 326
Cdd:PRK07764 385 LGVAGGAGAPAAAAPSAAAAAPAAAPAP-AAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAgGAPSPPPAAAPS 463

                         90       100
                 ....*....|....*....|....*
gi 157820007 327 TQPAPVQVREAATQQTPVEVADDTQ 351
Cdd:PRK07764 464 AQPAPAPAAAPEPTAAPAPAPPAAP 488
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 174-316 9.47e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.51  E-value: 9.47e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 174 APVQVHEVATQPVPVQVRDAATQPVPVRvrdAATQPVPVRVRDAATQPVPVRVRDAATQPVPVRVRDAA-TEPVPVQVRD 252
Cdd:PRK07764 385 LGVAGGAGAPAAAAPSAAAAAPAAAPAP---AAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAgGAPSPPPAAA 461

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 157820007 253 AATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQ 316
Cdd:PRK07764 462 PSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRERWPEILAAVPK 525
FimV COG3170
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
142-357 9.48e-04

Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];


Pssm-ID: 442403 [Multi-domain]  Cd Length: 508  Bit Score: 41.32  E-value: 9.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 142 VRDAATQVAPVQVRDAAIQPAPvkvRDAATQVAPVQVHEVATQPVPVQVRDAATQPVPVR----VRDAATQPVPVRVRDA 217
Cdd:COG3170   97 VREYTLLLDPPAYAAAAAAPAA---APAPAPAAPAAAAAAADQPAAEAAPAASGEYYPVRpgdtLWSIAARPVRPSSGVS 173

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 218 ATQPVPVRVR---DAATQPVPVRVRDAATEPVPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPA 294
Cdd:COG3170  174 LDQMMVALYRanpDAFIDGNINRLKAGAVLRVPAAEEVAALSPAEARQEVQAQSADWAAYRARLAAAVEPAPAAAAPAAP 253

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 157820007 295 PVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVREAATQQTPVEVADDTQLVQLKA 357
Cdd:COG3170  254 PAAAAAAGPVPAAAEDTLSPEVTAAAAAEEADALPEAAAELAERLAALEAQLAELQRLLALKN 316
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 182-360 1.22e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.12  E-value: 1.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 182 ATQPVPVQVRDAATQPVPVRVrDAATQPVPVRVRDAATQPVPVRVRDAATQPVPVRVRDAATEPVPvqvrDAATQPAPVQ 261
Cdd:PRK07764 598 EGPPAPASSGPPEEAARPAAP-AAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDA----SDGGDGWPAK 672

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 262 VRDAA-TQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVREAATQ 340
Cdd:PRK07764 673 AGGAApAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPA 752

                        170       180
                 ....*....|....*....|
gi 157820007 341 QTPVEVADDTQLVQLKAGEA 360
Cdd:PRK07764 753 GAPAQPPPPPAPAPAAAPAA 772
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
193-350 1.32e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.01  E-value: 1.32e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 193 AATQPVPvRVRDAATQPVPVRVRDAATQPVPVRVRDAATQPVPVRVRDAATEPVPVQVRDAATQPAPVQVRDAATQPAPV 272
Cdd:PRK12323 377 AAAAPVA-QPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPA 455

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 273 QVRDAATQPAPVQVR---DAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRD-AATQPAPVQVREAATQQTPVEVAD 348
Cdd:PRK12323 456 AAPAAAARPAAAGPRpvaAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPApAQPDAAPAGWVAESIPDPATADPD 535


                 ..
gi 157820007 349 DT 350
Cdd:PRK12323 536 DA 537
rne PRK10811
ribonuclease E; Reviewed
 161-348 1.55e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 41.18  E-value: 1.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  161 PAPVKVRDAATQVAPVQVHEVATQPVPVQVRDAATQ-PVPVRVRDAATQPVPVRVRDA--ATQPVPVRVRDAATQPVPVR 237
Cdd:PRK10811  689 QAQQEAKALNVEEQSVQETEQEERVQQVQPRRKQRQlNQKVRIEQSVAEEAVAPVVEEtvAAEPVVQEVPAPRTELVKVP 768

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  238 VrDAATEPVPVQVRDAATQPA-----------------------------------PVQVRDAATQP----APVQVRDAA 278
Cdd:PRK10811  769 L-PVVAQTAPEQDEENNAENRdnngmprrsrrsprhlrvsgqrrrryrderyptqsPMPLTVACASPemasGKVWIRYPV 847

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  279 TQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPApVQVREAATQQTPVEVAD 348
Cdd:PRK10811  848 VRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPV-VVAEPQPEEVVVVETTH 916
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 230-365 1.72e-03

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 40.48  E-value: 1.72e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 230 ATQPVPVrvrdaatePVPVQVRDAATQ---PAPVQVRDAATQPAPVQVRDAATQPAPvqvrDAATQPAPVQVRDAATQPA 306
Cdd:PHA03269  20 ANLNTNI--------PIPELHTSAATQkpdPAPAPHQAASRAPDPAVAPTSAASRKP----DLAQAPTPAASEKFDPAPA 87

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 307 PVQVRDAATQPAPVQVRDAATQPAPVQVREAATQQTPVEVADDTQLVQLKAGEAF-AQHT 365
Cdd:PHA03269  88 PHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAhTQHS 147
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 176-271 1.86e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 40.56  E-value: 1.86e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 176 VQVHEVATQPVPVQVRDAATQPVPVRVRDAATQPVPVRVRDAATQPVPVRVRDAATQP-VPVRVRDAATEPVPVQVRDAA 254
Cdd:PRK14950 353 LAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPpVPPRPVAPPVPHTPESAPKLT 432

                         90
                 ....*....|....*..
gi 157820007 255 TQPAPVQVRDAATQPAP 271
Cdd:PRK14950 433 RAAIPVDEKPKYTPPAP 449
PHA03379 PHA03379
EBNA-3A; Provisional
 133-399 2.01e-03

EBNA-3A; Provisional


Pssm-ID: 223066 [Multi-domain]  Cd Length: 935  Bit Score: 40.43  E-value: 2.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 133 ATTQPTPVKVRDAATQVaPVQVRDAAIQPAPVKVRDAAT----QVAPVQVHEVATQPVPVQVRDAATQPVPVRVRDAATQ 208
Cdd:PHA03379 468 AQLPPGPLQDLEPGDQL-PGVVQDGRPACAPVPAPAGPIvrpwEASLSQVPGVAFAPVMPQPMPVEPVPVPTVALERPVC 546

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 209 PVPVRV------RDAATQPVPVRVRDAATQPVPVRvrdaatEPVPVQVRDAATQPAP-VQVRDAATQPAPVQVRDAATQP 281
Cdd:PHA03379 547 PAPPLIamqgpgETSGIVRVRERWRPAPWTPNPPR------SPSQMSVRDRLARLRAeAQPYQASVEVQPPQLTQVSPQQ 620

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 282 A---PVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQvrDAATQPAPVQVREAATQQTPVEVADDTQLVQLKAG 358
Cdd:PHA03379 621 PmeyPLEPEQQMFPGSPFSQVADVMRAGGVPAMQPQYFDLPLQ--QPISQGAPLAPLRASMGPVPPVPATQPQYFDIPLT 698

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 157820007 359 EAFAQHTSGKVHQDVNGQSPIEVCE-----GATQRHSVDASEALSQ 399
Cdd:PHA03379 699 EPINQGASAAHFLPQQPMEGPLVPErwmfqGATLSQSVRPGVAQSQ 744
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 118-280 2.25e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.35  E-value: 2.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 118 ALEAGVERRLMAASKATTQPTPVKVRDAATQVAPVQVRDAAI-----QPAPVKVRDAATQVAPVQVHEVATQPVPVQVRD 192
Cdd:PRK07764 637 AEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPaapppAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADD 716

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 193 AATQPVPVRVRDAATQPVPVRVRDAATQPVPVRVRDAATQPVPVRVRDAATEPVPVQVRDAATQPAPVQVRDAATQPAPV 272
Cdd:PRK07764 717 PAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDE 796


                 ....*...
gi 157820007 273 QVRDAATQ 280
Cdd:PRK07764 797 DRRDAEEV 804
PHA03247 PHA03247
large tegument protein UL36; Provisional
 126-319 2.46e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.31  E-value: 2.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  126 RLMAASKATTQPTPVKVRDAATQVAPVQVRDAAIQPA-----PVKVRDAATQVAPVQVHEVATQPVPVQVRDAATQPVPV 200
Cdd:PHA03247 2785 RPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAaspagPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRR 2864

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  201 RVRDAATQPVPV-----RVRDAATQPVPVRVRDAAT---QPVPVRVRDAATEPVPVQVRDAATQPAPVQVRDAATQPAPV 272
Cdd:PHA03247 2865 RPPSRSPAAKPAaparpPVRRLARPAVSRSTESFALppdQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA 2944

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 157820007  273 QVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAP 319
Cdd:PHA03247 2945 PTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPAS 2991
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 114-261 2.51e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 40.23  E-value: 2.51e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 114 MEKEALEAGVERRLMAASKATTQPTPVKVRDAATQVAPVQVRDAAIQPAPVKVRDAATQVAPVQVHEVATQPVPVQVRDA 193
Cdd:PRK07994 370 VPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRA 449

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 157820007 194 ATQPVPVRvRDAATQPVPVRVRDAATQPVPVRVRdaATQPVPVRVRDAATEPVPVQVRDAATQPAPVQ 261
Cdd:PRK07994 450 RPVNSALE-RLASVRPAPSALEKAPAKKEAYRWK--ATNPVEVKKEPVATPKALKKALEHEKTPELAA 514
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
253-332 2.57e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 40.14  E-value: 2.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 253 AATQPAPVQVRDAATQP--APVQVRDAATQPAPVQVRDAAtqPAPVQVRDAATQPAPVQVRDAATQPAPVQVRdAATQPA 330
Cdd:PRK14971 382 VFTQPAAAPQPSAAAAAspSPSQSSAAAQPSAPQSATQPA--GTPPTVSVDPPAAVPVNPPSTAPQAVRPAQF-KEEKKI 458


                 ..
gi 157820007 331 PV 332
Cdd:PRK14971 459 PV 460
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
241-353 3.36e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 39.76  E-value: 3.36e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 241 AATEPVPVQVRDAATQP--APVQVRDAATQPAPVQVRDAAtqPAPVQVRDAATQPAPVQVRDAATQPAPVQVRdAATQPA 318
Cdd:PRK14971 382 VFTQPAAAPQPSAAAAAspSPSQSSAAAQPSAPQSATQPA--GTPPTVSVDPPAAVPVNPPSTAPQAVRPAQF-KEEKKI 458

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 157820007 319 PVQ------------VRDAATQPApVQVREAATQQTPvEVADDTQLV 353
Cdd:PRK14971 459 PVSkvsslgpstlrpIQEKAEQAT-GNIKEAPTGTQK-EIFTEEDLQ 503
PHA03247 PHA03247
large tegument protein UL36; Provisional
 124-343 3.37e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.92  E-value: 3.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  124 ERRLMAASKATTQPTPVKVRD---AATQVAPVQVRDAAIQPAPVKVRDAATQVAPvqvHEVATQPVPVQVRDAATQPVPV 200
Cdd:PHA03247 2586 ARRPDAPPQSARPRAPVDDRGdprGPAPPSPLPPDTHAPDPPPPSPSPAANEPDP---HPPPTVPPPERPRDDPAPGRVS 2662

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  201 RVRDAATQPVPVRVRDAATQPVPVRVRDAATqPVPVRVRDAATEPVPVQVRDAATQPAPvqvrdAATQPAPVQVRDAATQ 280
Cdd:PHA03247 2663 RPRRARRLGRAAQASSPPQRPRRRAARPTVG-SLTSLADPPPPPPTPEPAPHALVSATP-----LPPGPAAARQASPALP 2736

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 157820007  281 PAPVQVRDAATQPAPVQVRDAATQPAPvqvrdaATQPAPVQVRDAATQPAPVQVREAATQQTP 343
Cdd:PHA03247 2737 AAPAPPAVPAGPATPGGPARPARPPTT------AGPPAPAPPAAPAAGPPRRLTRPAVASLSE 2793
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 117-229 3.39e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 39.70  E-value: 3.39e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 117 EALEAGVERRLMAASKATTQPTPVKVRDAATQVApvqvrdAAIQPAPVKVRDAATQVAPVQVHEVATQPVPVQVRDAATQ 196
Cdd:PRK14951 385 EAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPP------AAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPE 458

                         90       100       110
                 ....*....|....*....|....*....|...
gi 157820007 197 PVPVRVRDAATQPVPVRVRDAATQPVPVRVRDA 229
Cdd:PRK14951 459 TVAIPVRVAPEPAVASAAPAPAAAPAAARLTPT 491
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 161-259 3.84e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 39.41  E-value: 3.84e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 161 PAPVKVRDAATQVAPVQVHEVATQPVPVQVRDAATQPVPVRVRDAATQPVPVRVRDAATQPvPVRVRDAATQPVPVR--V 238
Cdd:PRK14950 350 PLELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPP-PVPPRPVAPPVPHTPesA 428

                         90       100
                 ....*....|....*....|.
gi 157820007 239 RDAATEPVPVQVRDAATQPAP 259
Cdd:PRK14950 429 PKLTRAAIPVDEKPKYTPPAP 449
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 129-372 4.00e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 39.68  E-value: 4.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  129 AASKATTQPTPVKVRDAATQVAPVQVRDAAIQPAPV-KVRDAATQVAPVQVHEVATQPVPVQVrdaATQPVPVRVRDAAT 207
Cdd:PRK10263  426 EQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTyQTEQTYQQPAAQEPLYQQPQPVEQQP---VVEPEPVVEETKPA 502

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  208 QPVPVRVRDAATQPVPVRVRDAA-TQPVPvrvrDAATEPVPVQVRDAATQPAPVQVRDAATQPAPVqvrDAATQPAPVQV 286
Cdd:PRK10263  503 RPPLYYFEEVEEKRAREREQLAAwYQPIP----EPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPL---ASGVKKATLAT 575

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  287 RDAATQPAPVQVRDAATQPAPvQVRD--AATQPAPVQVRDAATQPAPVQVREAATQQTPVEVADDTQLVQLKAGEAFAQH 364
Cdd:PRK10263  576 GAAATVAAPVFSLANSGGPRP-QVKEgiGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDD 654


                  ....*...
gi 157820007  365 TSGKVHQD 372
Cdd:PRK10263  655 EIDAMQQD 662
PRK13700 PRK13700
conjugal transfer protein TraD; Provisional
 269-372 4.22e-03

conjugal transfer protein TraD; Provisional


Pssm-ID: 184256 [Multi-domain]  Cd Length: 732  Bit Score: 39.56  E-value: 4.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 269 PAPVQVRDAATQPAPVQvrdaATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVREAATQQTPVEVAD 348
Cdd:PRK13700 608 PEVASGEDVTQAEQPQQ----PQQPQQPQQPQQPQQPVSPVINDKKSDAGVNVPAGGIEQELKMKPEEEMEQQLPPGISE 683

                         90       100
                 ....*....|....*....|....
gi 157820007 349 DTQLVQLKAGEAFAQHTSGKVHQD 372
Cdd:PRK13700 684 SGEVVDMAAYEAWQQENHPDIQQQ 707
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
259-351 4.55e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 39.37  E-value: 4.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 259 PVQVRDAATQPAPVQ-VRDAATQPAPVQVRDAATQP--APVQVRDAATQPAPVQVRDAAtqPAPVQVRDAATQPAPVQVR 335
Cdd:PRK14971 363 TQKGDDASGGRGPKQhIKPVFTQPAAAPQPSAAAAAspSPSQSSAAAQPSAPQSATQPA--GTPPTVSVDPPAAVPVNPP 440

                         90
                 ....*....|....*.
gi 157820007 336 EAATQQTPVEVADDTQ 351
Cdd:PRK14971 441 STAPQAVRPAQFKEEK 456
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 252-327 5.81e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 39.10  E-value: 5.81e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 157820007  252 DAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAAT 327
Cdd:PRK12270   43 APTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118
rne PRK10811
ribonuclease E; Reviewed
 117-241 6.54e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 38.87  E-value: 6.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007  117 EALEAGVERRLMAASKATTQPTPVKVRDAATQVAPVQVRDAAI----QPAPVKVRDAATQVAPVQVHEVATQPVpVQVRD 192
Cdd:PRK10811  889 EAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVItesdVAVAQEVAEHAEPVVEPQDETADIEEA-AETAE 967

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 157820007  193 AATQPVPVRVRDAATQPVPVRVRDAATQPVPVRVRDAATQPVPVRVRDA 241
Cdd:PRK10811  968 VVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHA 1016
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 240-315 7.71e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 38.72  E-value: 7.71e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 157820007  240 DAATEPVPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAAT 315
Cdd:PRK12270   43 APTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
241-363 8.04e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 38.70  E-value: 8.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 241 AATEPVPvQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPV 320
Cdd:PRK12323 377 AAAAPVA-QPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPA 455

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 157820007 321 QVrdaatqPAPVQVREAATQQTPVEVADDTQLVQLKAGEAFAQ 363
Cdd:PRK12323 456 AA------PAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPA 492
FimV COG3170
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
129-347 9.83e-03

Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];


Pssm-ID: 442403 [Multi-domain]  Cd Length: 508  Bit Score: 38.24  E-value: 9.83e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 129 AASKATTQPTPVKVRDAATQVAPVQVRDAAIQPAPVKVRD-----AATQVAPVQVHEVATQPVPVQV--RDAATQPVPVR 201
Cdd:COG3170  117 AAAPAPAPAAPAAAAAAADQPAAEAAPAASGEYYPVRPGDtlwsiAARPVRPSSGVSLDQMMVALYRanPDAFIDGNINR 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820007 202 VRDAATQPVPVRVRDAATQPVPVRVRDAATQPVPVRVRDAATEPVPVQVRDAATQPAPVQVRDAATQPAPVQVRDAATQP 281
Cdd:COG3170  197 LKAGAVLRVPAAEEVAALSPAEARQEVQAQSADWAAYRARLAAAVEPAPAAAAPAAPPAAAAAAGPVPAAAEDTLSPEVT 276

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157820007 282 APVQVRDAATQPAPVQ-----VRDAATQPAPVQVRDAATQPAPVQVRDAATQPAPVQVREAATQQTPVEVA 347
Cdd:COG3170  277 AAAAAEEADALPEAAAelaerLAALEAQLAELQRLLALKNPAPAAAVSAPAAAAAAATVEAAAPAAAAQPA 347
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH