NCBI Conserved Domain Search

Conserved domains on [gi|157820279|ref|NP_001100106|]

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BSD domain-containing protein 1 [Rattus norvegicus]

Protein Classification

BSD domain-containing protein( domain architecture ID 10654557)

BSD domain-containing protein similar to Homo sapiens BSD domain-containing protein 1 and synapse-associated protein 1

CATH: 1.10.3970.10

PubMed: 11943536

SCOP: 4001198

Graphical summary

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List of domain hits

Name

Accession

Description

Interval

E-value

BSD

smart00751

domain in transcription factors and synapse-associated proteins;

148-198

1.82e-14

domain in transcription factors and synapse-associated proteins;

Pssm-ID: 128990 [Multi-domain] Cd Length: 51 Bit Score: 67.21 E-value: 1.82e-14

                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 157820279   148 SRFCLEEKKGEISELLVGSPSIRALYTKMVPAAVSHSEFWHRYFYKVHQLE 198
Cdd:smart00751   1 NSFSLDAKKEEIESLLKENPLLKKLYNELVPKVLSEEEFWARYFYLLYKIK 51

Name

Accession

Description

Interval

E-value

BSD

smart00751

domain in transcription factors and synapse-associated proteins;

148-198

1.82e-14

domain in transcription factors and synapse-associated proteins;

Pssm-ID: 128990 [Multi-domain] Cd Length: 51 Bit Score: 67.21 E-value: 1.82e-14

                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 157820279   148 SRFCLEEKKGEISELLVGSPSIRALYTKMVPAAVSHSEFWHRYFYKVHQLE 198
Cdd:smart00751   1 NSFSLDAKKEEIESLLKENPLLKKLYNELVPKVLSEEEFWARYFYLLYKIK 51

BSD

pfam03909

BSD domain; This domain contains a distinctive -FW- motif. It is found in a family of ...

152-202

1.19e-13

BSD domain; This domain contains a distinctive -FW- motif. It is found in a family of eukaryotic transcription factors as well as a set of proteins of unknown function.

Pssm-ID: 461089 Cd Length: 55 Bit Score: 65.22 E-value: 1.19e-13

                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 157820279  152 LEEKKGEISELLVGS-PSIRALYTKMVPAAVSHSEFWHRYFYKVHQLEQEQA 202
Cdd:pfam03909   4 LDEKTEEIAQLLLKEdPELRKLYEELVPSKVSEEEFWSRYFYLLRALKQEEE 55

Name

Accession

Description

Interval

E-value

BSD

smart00751

domain in transcription factors and synapse-associated proteins;

148-198

1.82e-14

domain in transcription factors and synapse-associated proteins;

Pssm-ID: 128990 [Multi-domain] Cd Length: 51 Bit Score: 67.21 E-value: 1.82e-14

                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 157820279   148 SRFCLEEKKGEISELLVGSPSIRALYTKMVPAAVSHSEFWHRYFYKVHQLE 198
Cdd:smart00751   1 NSFSLDAKKEEIESLLKENPLLKKLYNELVPKVLSEEEFWARYFYLLYKIK 51

BSD

pfam03909

BSD domain; This domain contains a distinctive -FW- motif. It is found in a family of ...

152-202

1.19e-13

BSD domain; This domain contains a distinctive -FW- motif. It is found in a family of eukaryotic transcription factors as well as a set of proteins of unknown function.

Pssm-ID: 461089 Cd Length: 55 Bit Score: 65.22 E-value: 1.19e-13

                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 157820279  152 LEEKKGEISELLVGS-PSIRALYTKMVPAAVSHSEFWHRYFYKVHQLEQEQA 202
Cdd:pfam03909   4 LDEKTEEIAQLLLKEdPELRKLYEELVPSKVSEEEFWSRYFYLLRALKQEEE 55

Blast search parameters

Data Source:	Precalculated data, version = cdd.v.3.21
Preset Options:	Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01