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Conserved domains on  [gi|157822477|ref|NP_001099752|]
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large ribosomal subunit protein mL48 isoform 2 [Rattus norvegicus]

Protein Classification

uS10/mL48 family ribosomal protein( domain architecture ID 10448432)

uS10/mL48 family ribosomal protein similar to fungal mitochondrial 37S ribosomal protein S10, human mitochondrial 39S ribosomal protein L48 and 28S ribosomal protein S10, and archaeal 30S ribosomal protein S10

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S10 pfam00338
Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes ...
 91-186 6.25e-26

Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.


:

Pssm-ID: 459769  Cd Length: 98  Bit Score: 96.02  E-value: 6.25e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822477   91 NIHLTAYDMTLAESYARYVHRLCNQLSIKVEESYAMPTKTME--VMRLPDQGNKMVLDSVLTTHERVVQISGLSATFAEI 168
Cdd:pfam00338   1 RIKLKSYDHALLDSYAKFIVRAAKRLGIKVSGPIPLPTKRLRvtVLKSPHVHKKSREQFEMRTHKRLIDIKDATPETVDA 80

                          90
                  ....*....|....*...
gi 157822477  169 FLEILQINLPEGVRLSVR 186
Cdd:pfam00338  81 LLRYLQLNLPEGVDVEVK 98
 
Name Accession Description Interval E-value
Ribosomal_S10 pfam00338
Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes ...
 91-186 6.25e-26

Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.


Pssm-ID: 459769  Cd Length: 98  Bit Score: 96.02  E-value: 6.25e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822477   91 NIHLTAYDMTLAESYARYVHRLCNQLSIKVEESYAMPTKTME--VMRLPDQGNKMVLDSVLTTHERVVQISGLSATFAEI 168
Cdd:pfam00338   1 RIKLKSYDHALLDSYAKFIVRAAKRLGIKVSGPIPLPTKRLRvtVLKSPHVHKKSREQFEMRTHKRLIDIKDATPETVDA 80

                          90
                  ....*....|....*...
gi 157822477  169 FLEILQINLPEGVRLSVR 186
Cdd:pfam00338  81 LLRYLQLNLPEGVDVEVK 98
 
Name Accession Description Interval E-value
Ribosomal_S10 pfam00338
Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes ...
 91-186 6.25e-26

Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.


Pssm-ID: 459769  Cd Length: 98  Bit Score: 96.02  E-value: 6.25e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822477   91 NIHLTAYDMTLAESYARYVHRLCNQLSIKVEESYAMPTKTME--VMRLPDQGNKMVLDSVLTTHERVVQISGLSATFAEI 168
Cdd:pfam00338   1 RIKLKSYDHALLDSYAKFIVRAAKRLGIKVSGPIPLPTKRLRvtVLKSPHVHKKSREQFEMRTHKRLIDIKDATPETVDA 80

                          90
                  ....*....|....*...
gi 157822477  169 FLEILQINLPEGVRLSVR 186
Cdd:pfam00338  81 LLRYLQLNLPEGVDVEVK 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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