NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|145332609|ref|NP_001078170|]
View 

RHOMBOID-like protein 14 [Arabidopsis thaliana]

Protein Classification

zinc finger Ran-binding domain-containing protein( domain architecture ID 10457766)

zinc finger Ran-binding domain-containing protein similar to Arabidopsis thaliana chloroplastic zinc finger protein VAR3, which is involved in C-to-U editing of chloroplastic RNA

CATH:  2.20.28.140
Gene Ontology:  GO:0008270|GO:0003723
PubMed:  19505478|17210253|11179890|12665246
SCOP:  4000343

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
113-137 1.08e-04

Zn-finger in Ran binding protein and others;


:

Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 37.72  E-value: 1.08e-04
                          10        20
                  ....*....|....*....|....*
gi 145332609  113 PGIWRCQSCTYDNSGWLSACEMCGS 137
Cdd:pfam00641   2 EGDWDCSKCLVQNFATSTKCVACQA 26
 
Name Accession Description Interval E-value
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
113-137 1.08e-04

Zn-finger in Ran binding protein and others;


Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 37.72  E-value: 1.08e-04
                          10        20
                  ....*....|....*....|....*
gi 145332609  113 PGIWRCQSCTYDNSGWLSACEMCGS 137
Cdd:pfam00641   2 EGDWDCSKCLVQNFATSTKCVACQA 26
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 116-136 3.20e-03

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 33.83  E-value: 3.20e-03
                           10        20
                   ....*....|....*....|.
gi 145332609   116 WRCQSCTYDNSGWLSACEMCG 136
Cdd:smart00547   3 WECPACTFLNFASRSKCFACG 23
 
Name Accession Description Interval E-value
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
113-137 1.08e-04

Zn-finger in Ran binding protein and others;


Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 37.72  E-value: 1.08e-04
                          10        20
                  ....*....|....*....|....*
gi 145332609  113 PGIWRCQSCTYDNSGWLSACEMCGS 137
Cdd:pfam00641   2 EGDWDCSKCLVQNFATSTKCVACQA 26
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 116-136 3.20e-03

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 33.83  E-value: 3.20e-03
                           10        20
                   ....*....|....*....|.
gi 145332609   116 WRCQSCTYDNSGWLSACEMCG 136
Cdd:smart00547   3 WECPACTFLNFASRSKCFACG 23
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH