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Conserved domains on  [gi|145323868|ref|NP_001077523|]
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Pentapeptide repeat-containing protein [Arabidopsis thaliana]

Protein Classification

pentapeptide repeat-containing protein( domain architecture ID 11442852)

pentapeptide repeat-containing protein (PRP) adopts a beta-helical structure and may have a targeting or structural function

CATH:  2.160.20.10
PubMed:  33925937|9655353

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
40-135 4.48e-15

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


:

Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 69.97  E-value: 4.48e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323868  40 ADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADL---SDTLMDRMVLNEANLTNAVLVRSV 116
Cdd:COG1357   34 ANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSGANLanlSGANLSGANLSGANLRGANLSGAN 113

                         90
                 ....*....|....*....
gi 145323868 117 LTRSDLGGAKIEGADFSDA 135
Cdd:COG1357  114 LSGADLSGADLSGANLSGA 132
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
40-135 4.48e-15

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 69.97  E-value: 4.48e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323868  40 ADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADL---SDTLMDRMVLNEANLTNAVLVRSV 116
Cdd:COG1357   34 ANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSGANLanlSGANLSGANLSGANLRGANLSGAN 113

                         90
                 ....*....|....*....
gi 145323868 117 LTRSDLGGAKIEGADFSDA 135
Cdd:COG1357  114 LSGADLSGADLSGANLSGA 132
PRK15197 PRK15197
type III secretion system effector PipB;
41-135 5.32e-06

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 45.69  E-value: 5.32e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323868  41 DLSKTVHSNENFRRANFTSADMresdfSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLTRS 120
Cdd:PRK15197 170 DLSDIDASNADFRETTLSNVNL-----VGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAILFGSDLTDT 244

                         90
                 ....*....|....*
gi 145323868 121 DLGGAKIEGADFSDA 135
Cdd:PRK15197 245 KLNGAKLDKIALTLA 259
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 51-94 6.07e-06

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 41.56  E-value: 6.07e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 145323868   51 NFRRANFTSADMRESDFSGSTFNGAYLEKAvaykaNFSGADLSD 94
Cdd:pfam00805   2 NLSGANLSGANLSGANLSGANLTGANLSGA-----DLSGANLSG 40
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
40-135 4.48e-15

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 69.97  E-value: 4.48e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323868  40 ADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADL---SDTLMDRMVLNEANLTNAVLVRSV 116
Cdd:COG1357   34 ANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSGANLanlSGANLSGANLSGANLRGANLSGAN 113

                         90
                 ....*....|....*....
gi 145323868 117 LTRSDLGGAKIEGADFSDA 135
Cdd:COG1357  114 LSGADLSGADLSGANLSGA 132
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
40-135 7.96e-14

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 66.50  E-value: 7.96e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323868  40 ADLSKTVHSNENFRRAN---FTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSV 116
Cdd:COG1357   69 ADLSGANLTGADLSGANlanLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGAD 148

                         90
                 ....*....|....*....
gi 145323868 117 LTRSDLGGAKIEGADFSDA 135
Cdd:COG1357  149 LSGADLSGANLSGANLSGA 167
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
41-135 9.91e-13

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 63.42  E-value: 9.91e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323868  41 DLSKTVHSNENFRRANFTSADMRESDFSGS----TFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSV 116
Cdd:COG1357    1 DLSGADLSGADLSGADLSGADLSGANLSGAlsgaNLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGAD 80

                         90       100
                 ....*....|....*....|..
gi 145323868 117 LTRSDL---GGAKIEGADFSDA 135
Cdd:COG1357   81 LSGANLanlSGANLSGANLSGA 102
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
33-135 6.59e-12

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 61.50  E-value: 6.59e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323868  33 SAAQYGSADLSKTVHSNENFRRANFTSAdMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVL 112
Cdd:COG1357    3 SGADLSGADLSGADLSGADLSGANLSGA-LSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADL 81

                         90       100       110
                 ....*....|....*....|....*....|.
gi 145323868 113 VRS--------VLTRSDLGGAKIEGADFSDA 135
Cdd:COG1357   82 SGAnlanlsgaNLSGANLSGANLRGANLSGA 112
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
40-134 6.07e-11

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 58.80  E-value: 6.07e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323868  40 ADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDtlmdrmvlneANLTNAVLVRSVLTR 119
Cdd:COG1357   87 ANLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSG----------ANLSGADLSGADLSG 156

                         90
                 ....*....|....*
gi 145323868 120 SDLGGAKIEGADFSD 134
Cdd:COG1357  157 ANLSGANLSGANLAN 171
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
40-128 9.87e-11

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 58.03  E-value: 9.87e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323868  40 ADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLtr 119
Cdd:COG1357   92 ANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGANLSGANL-- 169


                 ....*....
gi 145323868 120 SDLGGAKIE 128
Cdd:COG1357  170 ANLEGADLK 178
PRK15197 PRK15197
type III secretion system effector PipB;
41-135 5.32e-06

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 45.69  E-value: 5.32e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323868  41 DLSKTVHSNENFRRANFTSADMresdfSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLTRS 120
Cdd:PRK15197 170 DLSDIDASNADFRETTLSNVNL-----VGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAILFGSDLTDT 244

                         90
                 ....*....|....*
gi 145323868 121 DLGGAKIEGADFSDA 135
Cdd:PRK15197 245 KLNGAKLDKIALTLA 259
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 51-94 6.07e-06

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 41.56  E-value: 6.07e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 145323868   51 NFRRANFTSADMRESDFSGSTFNGAYLEKAvaykaNFSGADLSD 94
Cdd:pfam00805   2 NLSGANLSGANLSGANLSGANLTGANLSGA-----DLSGANLSG 40
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 85-134 1.03e-05

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 41.17  E-value: 1.03e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 145323868   85 ANFSGADLSdtlmdrmvlnEANLTNAVLVRSVLTRSDLGGAKIEGADFSD 134
Cdd:pfam00805   1 ANLSGANLS----------GANLSGANLSGANLTGANLSGADLSGANLSG 40
PRK15196 PRK15196
type III secretion system effector PipB2;
55-135 1.14e-05

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 45.00  E-value: 1.14e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323868  55 ANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTlmdrmVLNEANLTNAVLVRSVLTRSDLGGAKIEGADFSD 134
Cdd:PRK15196 162 ANLTAENLCDADLSGANLEGAVLFMADCEGANFKGANLSGT-----SLGDSNFKNACLEDSIMCGATLDHANLTGANLQH 236


                 .
gi 145323868 135 A 135
Cdd:PRK15196 237 A 237
PRK15197 PRK15197
type III secretion system effector PipB;
51-159 1.16e-05

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 44.92  E-value: 1.16e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323868  51 NFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAKIEGA 130
Cdd:PRK15197 160 NLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAILFGS 239

                         90       100       110
                 ....*....|....*....|....*....|.
gi 145323868 131 DFSDAVID--LLQKQALckyaTGTNPLTGVD 159
Cdd:PRK15197 240 DLTDTKLNgaKLDKIAL----TLAKALTGAD 266
PRK15196 PRK15196
type III secretion system effector PipB2;
21-135 1.43e-05

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 44.61  E-value: 1.43e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323868  21 FEADTRGefgigsaAQYGSADLSKTVHSNENFR---------------RANFTSADMRESDFSG-----STFNGAYLEKA 80
Cdd:PRK15196 185 FMADCEG-------ANFKGANLSGTSLGDSNFKnacledsimcgatldHANLTGANLQHASLLGcsmieCNCSGANMDHT 257

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 145323868  81 VAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAKIEGADFSDA 135
Cdd:PRK15196 258 NLSGATLIRADMSGATLQGATIMAAIMEGAVLTRANLRKASFISTNLDGADLAEA 312
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
52-132 3.30e-05

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 40.72  E-value: 3.30e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323868   52 FRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLmdrmvLNEANLTNAVLVRSVLTRSDLGGAKIEGAD 131
Cdd:pfam13599   3 FTRCSFEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVD-----FLEAQLKNAQFSGCNLKNSNFSDVKLKGAD 77


                  .
gi 145323868  132 F 132
Cdd:pfam13599  78 F 78
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 60-97 3.73e-05

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 39.63  E-value: 3.73e-05
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 145323868   60 ADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLM 97
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANL 38
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 40-74 8.86e-05

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 38.48  E-value: 8.86e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 145323868   40 ADLSKTVHSNENFRRANFTSADMRESDFSGSTFNG 74
Cdd:pfam00805   6 ANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
33-94 1.44e-04

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 40.69  E-value: 1.44e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 145323868  33 SAAQYGSADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSD 94
Cdd:COG1357  110 SGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGANLSGANLAN 171
PRK15196 PRK15196
type III secretion system effector PipB2;
33-159 2.95e-04

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 40.76  E-value: 2.95e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323868  33 SAAQYGSADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDT--LMDRMV---LNEANL 107
Cdd:PRK15196 175 SGANLEGAVLFMADCEGANFKGANLSGTSLGDSNFKNACLEDSIMCGATLDHANLTGANLQHAslLGCSMIecnCSGANM 254

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 145323868 108 TNAVLVRSVLTRSDLGGAKIEGADFSDAVID--LLQKQALCKYATGTNPLTGVD 159
Cdd:PRK15196 255 DHTNLSGATLIRADMSGATLQGATIMAAIMEgaVLTRANLRKASFISTNLDGAD 308
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 102-135 9.49e-04

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 35.78  E-value: 9.49e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 145323868  102 LNEANLTNAVLVRSVLTRSDLGGAKIEGADFSDA 135
Cdd:pfam00805   3 LSGANLSGANLSGANLSGANLTGANLSGADLSGA 36
PRK15377 PRK15377
type III secretion system effector HECT-type E3 ubiquitin transferase;
32-137 1.64e-03

type III secretion system effector HECT-type E3 ubiquitin transferase;


Pssm-ID: 185275 [Multi-domain]  Cd Length: 782  Bit Score: 38.89  E-value: 1.64e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323868  32 GSAAQYGSADLSKTVHSNENFRRANFTSA------DMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEA 105
Cdd:PRK15377 187 GEELTYADRDFSNADFRNINFSKINPSGFmlrdgdIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNS 266

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 145323868 106 NLTNAVLVRSVLTR-------SDLGGAKI-EGADFSDAVI 137
Cdd:PRK15377 267 DMNEASLKYSITTQqqpsfieTTLKNTIIiHKANLSGVIL 306
PRK15196 PRK15196
type III secretion system effector PipB2;
48-120 1.75e-03

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 38.45  E-value: 1.75e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 145323868  48 SNENFRRANFTSADMRESDFSGSTFNGAY-----LEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLTRS 120
Cdd:PRK15196 250 SGANMDHTNLSGATLIRADMSGATLQGATimaaiMEGAVLTRANLRKASFISTNLDGADLAEANLNNTCFKDCTLTHL 327
PRK15197 PRK15197
type III secretion system effector PipB;
40-130 1.87e-03

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 38.37  E-value: 1.87e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323868  40 ADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLTR 119
Cdd:PRK15197 179 ADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAILFGSDLTDTKLNGAKLDKIALTL 258

                         90
                 ....*....|..
gi 145323868 120 SD-LGGAKIEGA 130
Cdd:PRK15197 259 AKaLTGADLTGS 270
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 40-78 2.50e-03

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 34.62  E-value: 2.50e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 145323868   40 ADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLE 78
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLS 39
PRK15196 PRK15196
type III secretion system effector PipB2;
56-152 3.23e-03

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 37.68  E-value: 3.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323868  56 NFTSADMRESDFSGSTFNGAYLEKAVaykanFSGADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAKIEGADFSDA 135
Cdd:PRK15196 248 NCSGANMDHTNLSGATLIRADMSGAT-----LQGATIMAAIMEGAVLTRANLRKASFISTNLDGADLAEANLNNTCFKDC 322

                         90
                 ....*....|....*...
gi 145323868 136 VI-DLLQKQALCKYATGT 152
Cdd:PRK15196 323 TLtHLRTEDATMSTSTQT 340
PRK15197 PRK15197
type III secretion system effector PipB;
35-126 4.65e-03

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 37.22  E-value: 4.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323868  35 AQYGSADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLekavaykanfSGADLSDTLMDRMVLNEANLTNAvlvr 114
Cdd:PRK15197 194 ANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAIL----------FGSDLTDTKLNGAKLDKIALTLA---- 259

                         90
                 ....*....|..
gi 145323868 115 SVLTRSDLGGAK 126
Cdd:PRK15197 260 KALTGADLTGSQ 271
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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