|
Name |
Accession |
Description |
Interval |
E-value |
| 2A060602 |
TIGR00918 |
The Eukaryotic (Putative) Sterol Transporter (EST) Family; |
2-1140 |
0e+00 |
|
The Eukaryotic (Putative) Sterol Transporter (EST) Family;
Pssm-ID: 273338 [Multi-domain] Cd Length: 1145 Bit Score: 2072.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 2 GKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAANLETNVEELWVEVGGRVSRELNYTRQKI 81
Cdd:TIGR00918 28 GKATGRRAPLWLRAKFQRLLFTLGCYIQKHCGKVLFVGLLVFSAFAVGLRAANIETNVEQLWVEVGGRVSQELAYTRQKI 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 82 GEEAMFNPQLMIQTPKEEGANVLTTEALLQHLDSALQASRVHVYMYNRQWKLEHLCYKSGELITETGYMDQIIEYLYPCL 161
Cdd:TIGR00918 108 GEEAMFTPQLLIQTPHQEGANVLTPEALLQHLDSALKASRVHVYLYNRQWGLEHLCYKSGEPSTEGGYIEQILEKLIPCL 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 162 IITPLDCFWEGAKLQSGTAYLLGKPPLRWTNFDPLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPADPDCPAT 241
Cdd:TIGR00918 188 IITPLDCFWEGAKLQGGTAYLPGKPPLQWTNLDPASFLEELKQKMSQVESWEEMLKKAAVGQGYMERPCLNPADPDCPDT 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 242 APNKNSTKPLDMALVLNGGCHGLSRKYMHWQEELIVGGTVKNSTGKLVSAHALQTMFQLMTPKQMYEHFKGYEYVSHINW 321
Cdd:TIGR00918 268 APNKNSTQPPDVAAVLSGGCYGLSAKYMHWQEELIVGGTKRNRSGKLLSAQALQSMFQLMTPKQMYEHFKGYYKVHHIGW 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 322 NEDKAAAILEAWQRTYVEVVHQSVAQNSTQKVLSFTTTTLDDILKSFSDVSVIRVASGYLLMLAYACLTMLRWDCSKSQG 401
Cdd:TIGR00918 348 NEEKAAAVLEAWQRNFSEEVQQSLPKNSSQKILVFSSTTLDDILKKFSDVSAIRIVSGYLLMLAYACLTMLRWDCAKSQG 427
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 402 AVGLAGVLLVALSVAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNkrIPFEDRTGECLKRTGAS 481
Cdd:TIGR00918 428 SVGLAGVLLVALSVAAGLGLCALLGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQN--IPFEERTGECLKRTGAS 505
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 482 VALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLDIFCCFTSPCVSRVIQVEP 561
Cdd:TIGR00918 506 VVLTSISNVTAFFMAALIPIPALRAFSLQAAIVVVFNFAAVLLVFPAILSLDLRRREDRRLDIFCCFFSPCSARVIQIEP 585
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 562 QAYTDThdntryspppPYSSHSFAHetqitMQSTVQLRTEYDPHTHVYYTTAEPRSEISVQPvtvtQDTLSCQSPESTSS 641
Cdd:TIGR00918 586 QAYADG----------SAPPVYSSH-----MQSTVQLRTEYDPGTQHYYTTNEPRSHLSVQP----SDPLSCQSPDIAGS 646
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 642 TRDLLSQFSDSSLHCLEPPCTKWTLSSFAEKHYAPFLLKPKAKVVVIFLFLGLLGVSLYGTTRVRDGLDLTDIVPRETRE 721
Cdd:TIGR00918 647 TRDLLSQFEDSKAACLSLPCARWTLATFAEKHYAPFLLQSWAKVVVIFLFLALLGLSLYGTTRVQDGLDLTDIVPRDTNE 726
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 722 YDFIAAQFKYFSFYNMYIVTQK-ADYPNIQHLLYDLHRSFSNVKYVMLEENKQLPKMWLHYFRDWLQGLQDAFDSDWETG 800
Cdd:TIGR00918 727 HDFLDAQFRYFSFYNMYAVTQGnFDYPTQQQLLYDLHQSFSSVKYVLKEDNGQLPRMWLHYFRDWLQGLQKAFDEDWRDG 806
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 801 KIMPNNYKNGSDDGVLAYKLLVQTGSRDKPIDISQLTKQRLVDADGIINPSAFYIYLTAWVSNDPVAYAASQANIRPHRP 880
Cdd:TIGR00918 807 RITKENYRNGSDDAVLAYKLLVQTGHRDKPVDKEQLTTQRLVNADGIINPNAFYIYLSAWVSNDPVAYAASQANIYPHPP 886
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 881 EWVHDKADYMPETrLRIPAAEPIEYAQFPFYLNGLRDTSDFVEAIEKVRTICSNYTSLGLSSYPNGYPFLFWEQYIGLRH 960
Cdd:TIGR00918 887 EWLHDKNDYDPEN-LRIPAAEPLEYAQFPFYLNGLRETSQFVEAIEHVRAICNNYEGFGLPSYPSGYPFLFWEQYMGLRH 965
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 961 WLLLFISVVLACTFLVCAVFLLNPWTAGIIVMVLALMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLT 1040
Cdd:TIGR00918 966 WLLLSISVVLACTFLVCALLLLNPWTAGLIVLVLALMTVELFGMMGLLGIKLSAIPVVILIASVGIGVEFTVHIALGFLT 1045
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 1041 AIGDKNRRAVLALEHMFAPVLDGAVSTLLGVLMLAGSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGPYPEVSP 1120
Cdd:TIGR00918 1046 AIGDRNRRAVLALEHMFAPVLDGALSTLLGVLMLAGSEFDFIVRYFFAVLAVLTCLGVLNGLVLLPVLLSMFGPEPEVSP 1125
|
1130 1140
....*....|....*....|
gi 134254466 1121 ANGLNRLPTPSPEPPPSVVR 1140
Cdd:TIGR00918 1126 AEGRSRLPTPSPEPPPGGVR 1145
|
|
| 2A060601 |
TIGR00917 |
Niemann-Pick C type protein family; The model describes Niemann-Pick C type protein in ... |
332-1113 |
2.11e-66 |
|
Niemann-Pick C type protein family; The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis. [Transport and binding proteins, Other]
Pssm-ID: 273337 [Multi-domain] Cd Length: 1205 Bit Score: 246.74 E-value: 2.11e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 332 AWQRTYVEVVhQSVAQNSTQKVLSFTT-TTLDDILKSFSDVSVIRVASGYLLMLAYACLTM-----LRWDCSKSQGAVGL 405
Cdd:TIGR00917 533 AWEKAFIQLA-KDELLPMVQATISFSAeRSIEDELKRESTADVITIAISYLVMFAYISLTLgdsprLKSLYVTSKVLLGL 611
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 406 AGVLLVALSVAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAF---------SETGQNKRIPFEDRTGECLK 476
Cdd:TIGR00917 612 SGILIVMLSVLGSVGVFSAVGLKSTLIIMEVIPFLVLAVGVDNIFILVFFYfyleyfyrqVGVDNEQELTLERRLSRALM 691
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 477 RTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLDIFCCftspcvsrv 556
Cdd:TIGR00917 692 EVGPSITLASLSEILAFALGALIKMPAVRVFSMFAVLAVFLDFLLQITAFVALLVLDFKRTEDKRVDCFPC--------- 762
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 557 IQVEPQAYTDThdntrysppppysshsfahetqitmqstvqlrteydphthvyyTTAEPRSEisvqpvtvtqdtlSCqsp 636
Cdd:TIGR00917 763 IKTSKSSISAE-------------------------------------------KGSGQRKA-------------GL--- 783
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 637 estsstrdllsqfsdsslhcleppctkwtLSSFAEKHYAPFLLKPKAKVVVIFLFLGLLGVSLYGTTRVRDGLDLTDIVP 716
Cdd:TIGR00917 784 -----------------------------LTRYFKEVYAPVLLHWIVKIVVIAFFVGLLMAGIALSTRVEIGLDQQIVLP 834
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 717 RETREYDFIAAQFKYFSFYNMYIVTQKADYPniqhllYDLHRSFSNVKYVMLEENKQL-------------PKMWLHYFR 783
Cdd:TIGR00917 835 QDSYLQIYFASLTPLLEVGPPFYIVIKGDYN------YTDFESQNKLCTMGGCDKDSIvnvfnnlsyiakpASSWLDDYL 908
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 784 DWLQGLQDAFDSDWETGKimpnnYKNGSDDGVLAYKllvqtgsrdkpiDISQLTKQRlvdadgiINPSAFYIYLTAWVSN 863
Cdd:TIGR00917 909 VWLSPQASCCCRKFTNGT-----FCNGPDPQCFRCA------------DLSSDAQGR-------PSTTQFKEKLPWFLNA 964
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 864 DP--------VAYAASQANIRPHrpewvhdkadympetrlripaAEPIEYAQFPFYLNGLRDTSDFVEAIEKVRTICSNY 935
Cdd:TIGR00917 965 LPsadcakggHAAYSSAVDLQGY---------------------ATIIQASSFRTYHTPLNTQVDFINAMRAAQEFAAKV 1023
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 936 T-SLGLSSYPNGYPFLFWEQYIGLRHWLLLFISVVLACTFLVCAVFL-LNPWTAGIIVMVLALMTVELFGMMGLIGIKLS 1013
Cdd:TIGR00917 1024 SrSSKMEVYPYSVFYVFFEQYLTIWKTAIINLSIALGAIFIVCLFLLqLNALSVVNLIMSVGMAVVFCVGIMHLWSISLN 1103
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 1014 AVPVVILIASVGIGVEFTVHVALAFLTAI-GDKNRRAVLALEHMFAPVLDGAVST-LLGVLMLAGSEFDFIVRYFFAVLA 1091
Cdd:TIGR00917 1104 AVSVVNSVMHKGIAIEFCTHINAQFSTGKhFSRNHRAKEALGGMGSSVFSGITLTkLVGVVVLGFSRSEIFVVYYFRMYL 1183
|
810 820
....*....|....*....|..
gi 134254466 1092 ILTILGVLNGLVLLPVLLSFFG 1113
Cdd:TIGR00917 1184 ALVLLGFLHGLVFLPVLLSVLG 1205
|
|
| Sterol-sensing |
pfam12349 |
Sterol-sensing domain of SREBP cleavage-activation; Sterol regulatory element-binding proteins ... |
396-550 |
1.04e-49 |
|
Sterol-sensing domain of SREBP cleavage-activation; Sterol regulatory element-binding proteins (SREBPs) are membrane-bound transcription factors that promote lipid synthesis in animal cells. They are embedded in the membranes of the endoplasmic reticulum (ER) in a helical hairpin orientation and are released from the ER by a two-step proteolytic process. Proteolysis begins when the SREBPs are cleaved at Site-1, which is located at a leucine residue in the middle of the hydrophobic loop in the lumen of the ER. Upon proteolytic processing SREBP can activate the expression of genes involved in cholesterol biosynthesis and uptake. SCAP stimulates cleavage of SREBPs via fusion of the their two C-termini. This domain is the transmembrane region that traverses the membrane eight times and is the sterol-sensing domain of the cleavage protein. WD40 domains are found towards the C-terminus.
Pssm-ID: 463544 [Multi-domain] Cd Length: 153 Bit Score: 173.15 E-value: 1.04e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 396 CSKSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETgqNKRIPFEDRTGECL 475
Cdd:pfam12349 1 MVKSKFGLGLAGVIIVLASVASSLGLCAYFGLPLTLIISEVIPFLVLAIGVDNIFLLVKAVVRT--PRSLDVSERIAEAL 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 134254466 476 KRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLDIFCCFTS 550
Cdd:pfam12349 79 GEVGPSITLTSLTEILAFLLGALTDMPAVQEFCLFAAVAVLFDFLLQMTFFVAVLSLDIRRLESNRLDVACCIRV 153
|
|
| Patched |
pfam02460 |
Patched family; The transmembrane protein Patched is a receptor for the morphogene Sonic ... |
318-1112 |
2.97e-46 |
|
Patched family; The transmembrane protein Patched is a receptor for the morphogene Sonic Hedgehog. This protein associates with the smoothened protein to transduce hedgehog signals.
Pssm-ID: 308203 [Multi-domain] Cd Length: 793 Bit Score: 179.86 E-value: 2.97e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 318 HINWNEDKAAAILEAWQRTYVEVVHQSVAQNSTQkVLSFTTTTLDDILKSFSDVSVIRVASGYLLMLAYACLT-----ML 392
Cdd:pfam02460 162 FLKFDEEEVEEDSKEWEDELSQLLHNKYASEHIQ-FTIFHDQILNDELVRNALTLTPFFVIGFFLLLTFSIIVsvtlsSY 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 393 RWDCSKSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAATTqVLPFLALGVGVDDVFLLAHAFSETgqNKRIPFEDRTG 472
Cdd:pfam02460 241 TIDWVRSKPILAALGLLSPVMAIVSSFGLLFWMGFPFNSIVC-VTPFLVLAIGVDDMFLMVAAWQRT--TATLSVKKRMG 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 473 ECLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMdlyrredrrldifccftspc 552
Cdd:pfam02460 318 EALSEAGVSITITSLTDVLSFGIGTYTPTPAIQLFCAYTAVAIFFDFIYQITFFAAIMAI-------------------- 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 553 vsrviqvepqaytdthdntrysppppysshsfahetqitmqstvqlrteydphthvyytTAEPrsEISVQPVTVTQDTLS 632
Cdd:pfam02460 378 -----------------------------------------------------------CAKP--EAEGRHCLFVWATSS 396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 633 CQSPESTSSTRDllsqfsdsSLHCLEPPctkwtLSSFAEKHYAPFLLKPKAKVVVIFLFLGLLGVSLYGTTRVRDGLDLT 712
Cdd:pfam02460 397 PQRIDSEGSEPD--------KSHNIEQL-----KSRFFLDIYCPFLLNPSVRVCMLVLFVVYIAIAIYGCVNIKEGLEPD 463
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 713 DIVPRETREYDFIAAQFKYFSFY--NMYIVTQKAdyPNIQ-HLLYD----LHRSFSNVKYVMleeNKQLPKMWLHYFRDW 785
Cdd:pfam02460 464 KLVLEDSPLVEYLSLREKHFWPEglQIQVAVNNP--PNLTiPESRDrmneMVDEFENTPYSL---GPNSTLFWLREYENF 538
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 786 LQGLQDAFDSDWEtgkimpnnykngsddgvlaykllvqtgsrdkpidisqltkqrlvdadgiinPSAFYIYLTAWVSNdp 865
Cdd:pfam02460 539 LSTLNMEEEEDEE---------------------------------------------------KEWSYGNLPSFLKA-- 565
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 866 vayaasqanirPHRPEW----VHDKADYMpetrlripaaepIEYAQFPFYLNGLRDTSDFVEAIEKVRTICSNYTSLGLS 941
Cdd:pfam02460 566 -----------PGNSHWagdlVWDDNTTM------------VTKFRFTLAGKGLSTWNDRTRALQEWRSIADQYPEFNVT 622
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 942 SYPNGYPFLfwEQYIGLRHWLLLFISVVLACTFLVCAVFLLNPWTAGIIVMVLALMTVELFGMMGLIGIKLSAVPVVILI 1021
Cdd:pfam02460 623 VFDEDAPFA--DQYLTILPSTIQNIVITLICMFIVCFLFIPNPPCVFVITLAIASIDIGVFGFLSLWGVDLDPISMITII 700
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 1022 ASVGIGVEFTVHVALAFLTAIG-DKNRRAVLALEHMFAPVLDGAVSTLLGVLMLAgseF--DFIVRYFFAVLAILTILGV 1098
Cdd:pfam02460 701 MSIGFSVDFSAHIAYHFVRSRGdTPAERVVDALEALGWPVFQGGLSTILGVLVLL---FvpSYMVVVFFKTVFLVVAIGL 777
|
810
....*....|....
gi 134254466 1099 LNGLVLLPVLLSFF 1112
Cdd:pfam02460 778 LHGLFILPIILSLF 791
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
362-1115 |
1.47e-20 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 98.39 E-value: 1.47e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 362 DDILKSFSDVSVIRVASGYLLMLAYACLTMLRWdcsksqgAVGLAGVLLVALSVAAGLGLCSLIGISFNAATTqVLPFLA 441
Cdd:COG1033 210 GDIAEAIQSDLAIFFPLALLLILLLLFLFFRSL-------RGVLLPLLVVLLAVIWTLGLMGLLGIPLSPLTI-LVPPLL 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 442 LGVGVDD-VFLLAHAFSETGQNKriPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFA 520
Cdd:COG1033 282 LAIGIDYgIHLLNRYREERRKGL--DKREALREALRKLGPPVLLTSLTTAIGFLSLLFSDIPPIRDFGIVAAIGVLLAFL 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 521 MVLLIFPAILSMdLYRREDRRldifccftspcvsrviqvepqaytdthdntrysppppysshsfahetqitmqstvqlrt 600
Cdd:COG1033 360 TSLTLLPALLSL-LPRPKPKT----------------------------------------------------------- 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 601 eydphthvyyttaeprseisvqpvtvtqdtlscQSPESTSSTRDLLSQFSDsslhcleppctkwtlssFAEKHYapfllk 680
Cdd:COG1033 380 ---------------------------------RRLKKPPELGRLLAKLAR-----------------FVLRRP------ 403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 681 pkakVVVIFLFLGLLGVSLYGTTRVRDGLDLTDIVPRETREY---DFIAAQFKYFSFYNMYIVTQKADY---PNIQHLLY 754
Cdd:COG1033 404 ----KVILVVALVLAVVSLYGISRLKVEYDFEDYLPEDSPIRqdlDFIEENFGGSDPLEVVVDTGEPDGlkdPEVLKEID 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 755 DLH---RSFSNVKYVMleenkqlpkmWLHYFRDWLQGLQDAFDSDWETgkiMPNNykngsDDGVLAYKLLVQTGSRDkpi 831
Cdd:COG1033 480 RLQdylESLPEVGKVL----------SLADLVKELNQALNEGDPKYYA---LPES-----RELLAQLLLLLSSPPGD--- 538
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 832 disqlTKQRLVDADGiinpsafyiyltawvsndpvayaaSQANIRphrpewvhdkadympetrlripaaepieyaqfpFY 911
Cdd:COG1033 539 -----DLSRFVDEDY------------------------SAARVT---------------------------------VR 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 912 LNGLrDTSDFVEAIEKVRT-ICSNYTSLGLSSYPNGYPFLF--WEQYIGLRHWLLLFISVVLacTFLVCAVFLLNpWTAG 988
Cdd:COG1033 557 LKDL-DSEEIKALVEEVRAfLAENFPPDGVEVTLTGSAVLFaaINESVIESQIRSLLLALLL--IFLLLLLAFRS-LRLG 632
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 989 IIVMVLALMTVEL-FGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAI--GDKNRRAVL-ALEHMFAPVLDGA 1064
Cdd:COG1033 633 LISLIPNLLPILLtFGLMGLLGIPLNIATAVVASIALGIGVDYTIHFLSRYREERrkGGDLEEAIRrALRTTGKAILFTS 712
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 1065 VSTLLGVLMLAGSEFDFIvRYF---------FAVLAILTIlgvlnglvlLPVLLSFFGPY 1115
Cdd:COG1033 713 LTLAAGFGVLLFSSFPPL-ADFglllalgllVALLAALLL---------LPALLLLLDPR 762
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
907-1117 |
4.42e-15 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 80.67 E-value: 4.42e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 907 QFPFYLNGLRDTSDFVEAIEKVRTICSNYTSLGLSSYPNGYPFLFWEQYIGLRHWLLLFISVVLACTFLVCAVFLLNPWT 986
Cdd:COG1033 165 VVTLDPDPLSSDLDRKEVVAEIRAIIAKYEDPGVEVYLTGFPVLRGDIAEAIQSDLAIFFPLALLLILLLLFLFFRSLRG 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 987 AGIIVMVLALMTVELFGMMGLIGIKLS----AVPVVILiasvGIGVEFTVHVALAFLTAI---GDKNRRAVLALEHMFAP 1059
Cdd:COG1033 245 VLLPLLVVLLAVIWTLGLMGLLGIPLSpltiLVPPLLL----AIGIDYGIHLLNRYREERrkgLDKREALREALRKLGPP 320
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 134254466 1060 VLDGAVSTLLGVLMLAGSEFDfIVRYF---------FAVLAILTIlgvlnglvlLPVLLSFFGPYPE 1117
Cdd:COG1033 321 VLLTSLTTAIGFLSLLFSDIP-PIRDFgivaaigvlLAFLTSLTL---------LPALLSLLPRPKP 377
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
403-541 |
5.16e-13 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 73.74 E-value: 5.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 403 VGLAGVLLVALSVAAGLGLCSLIGISFNAATTQVLPfLALGVGVDDVFLLAHAFSEtGQNKRIPFEDRTGECLKRTGASV 482
Cdd:COG1033 631 LGLISLIPNLLPILLTFGLMGLLGIPLNIATAVVAS-IALGIGVDYTIHFLSRYRE-ERRKGGDLEEAIRRALRTTGKAI 708
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 134254466 483 ALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMdLYRREDRR 541
Cdd:COG1033 709 LFTSLTLAAGFGVLLFSSFPPLADFGLLLALGLLVALLAALLLLPALLLL-LDPRIAKK 766
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
363-546 |
2.45e-07 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 55.23 E-value: 2.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 363 DILKSFSDVSVIRVASGYLLMLAYACLTMLRWdcsksqgAVGLAGVLLVALSVAAGLGLCSLIGISFNAATTQVLPFLaL 442
Cdd:TIGR00921 186 DIEREFGKDMGTTMAISGILVVLVLLLDFKRW-------WRPLLPLVIILFGVAWVLGIMGWLGIPLYATTLLAVPML-I 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 443 GVGVDDVFLLAHAFSETGQNKRiPFEDRTGECLKRTGASVALTSISNVtAFFMAALIPI-PALRAFSLQAAVVVVFNFAM 521
Cdd:TIGR00921 258 GVGIDYGIQTLNRYEEERDIGR-AKGEAIVTAVRRTGRAVLIALLTTS-AGFAALALSEfPMVSEFGLGLVAGLITAYLL 335
|
170 180
....*....|....*....|....*.
gi 134254466 522 VLLIFPAIL-SMDLYRREDRRLDIFC 546
Cdd:TIGR00921 336 TLLVLPALLqSIDIGREKVKKEIIAI 361
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
403-530 |
3.48e-06 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 51.76 E-value: 3.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 403 VGLAGVLLVALSVAAGLGLCSLIGISFNAaTTQVLPFLALGVGVDDVFLLAHAFSETgQNKRIPFEDRTgECLKRTGASV 482
Cdd:TIGR00921 593 KAVFPLIAIGSGILWAIGLMGLRGIPSFL-AMATTISIILGLGMDYSIHLAERYFEE-RKEHGPKEAIT-HTMERTGPGI 669
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 134254466 483 ALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAIL 530
Cdd:TIGR00921 670 LFSGLTTAGGFLSLLLSHFPIMRNFGLVQGIGVLSSLTAALVVFPALL 717
|
|
| COG4258 |
COG4258 |
Predicted exporter [General function prediction only]; |
375-528 |
8.64e-06 |
|
Predicted exporter [General function prediction only];
Pssm-ID: 443400 [Multi-domain] Cd Length: 783 Bit Score: 50.24 E-value: 8.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 375 RVASGYLLMLAYA---CLTMLRwdcskSQGAVGLAGVLLV-ALSVAAGLGLCSLIGISFNAATTQVLpFLALGVGVD-DV 449
Cdd:COG4258 638 RNDALWLLLLALLlilLLLLLR-----LRSLRRALRVLLPpLLAVLLTLAILGLLGIPLNLFHLIAL-LLVLGIGIDyAL 711
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 134254466 450 FllahaFSETGQNKRIpfedrtgecLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPA 528
Cdd:COG4258 712 F-----FTEGLLDKGE---------LARTLLSILLAALTTLLGFGLLAFSSTPALRSFGLTVLLGILLALLLAPLLAPR 776
|
|
| COG4258 |
COG4258 |
Predicted exporter [General function prediction only]; |
963-1077 |
1.18e-05 |
|
Predicted exporter [General function prediction only];
Pssm-ID: 443400 [Multi-domain] Cd Length: 783 Bit Score: 49.85 E-value: 1.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 963 LLFISVVLActFLVCAVFLLNPWTAGIIVMVLALMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFtvhvALAFLTAI 1042
Cdd:COG4258 644 LLLLALLLI--LLLLLLRLRSLRRALRVLLPPLLAVLLTLAILGLLGIPLNLFHLIALLLVLGIGIDY----ALFFTEGL 717
|
90 100 110
....*....|....*....|....*....|....*
gi 134254466 1043 GDKNRRAvlalEHMFAPVLdGAVSTLLGVLMLAGS 1077
Cdd:COG4258 718 LDKGELA----RTLLSILL-AALTTLLGFGLLAFS 747
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
401-532 |
3.93e-05 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 48.22 E-value: 3.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 401 GAVGLAGV--LLVALSVAAGLGLCSLIG--ISFNAATTQVLPFLALGVGVD-DVFLLAhAFSE---TGQNKripfEDRTG 472
Cdd:COG2409 191 RSLVAALLplLTAGLAVGVALGLLALLAafTDVSSFAPNLLTMLGLGVGIDyALFLVS-RYREelrAGEDR----EEAVA 265
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 134254466 473 ECLKRTGASVAltsISNVT---AFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSM 532
Cdd:COG2409 266 RAVATAGRAVL---FSGLTvaiALLGLLLAGLPFLRSMGPAAAIGVAVAVLAALTLLPALLAL 325
|
|
| COG4258 |
COG4258 |
Predicted exporter [General function prediction only]; |
369-541 |
1.90e-04 |
|
Predicted exporter [General function prediction only];
Pssm-ID: 443400 [Multi-domain] Cd Length: 783 Bit Score: 46.00 E-value: 1.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 369 SDVSVIRVASGY----LLMLAYACLTMLrwdcsksqgavgLAGVLLVALSVAAGLGLCSLI-----GISFNAATTqvlpf 439
Cdd:COG4258 249 HDISTIGLISLLgillLLLLVFRSLRPL------------LLGLLPVAVGALAGLAAVSLVfgsvhGITLGFGSS----- 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 440 LaLGVGVD-DVFLLAHAFSETGQNKRIPfedrtgecLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFN 518
Cdd:COG4258 312 L-IGVAVDySLHYLTHRRAAGEWDPRAA--------LRRIWPTLLLGLLTTVLGYLALLFSPFPGLRQLGVFAAAGLLAA 382
|
170 180
....*....|....*....|...
gi 134254466 519 FAMVLLIFPAilsmdLYRREDRR 541
Cdd:COG4258 383 ALTTLLWLPL-----LLPRAAPR 400
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
975-1085 |
2.35e-04 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 45.60 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 975 LVCAVFLL--NPWTAGIIVMVLALMTVEL-FGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIG---DKNRR 1048
Cdd:TIGR00921 205 LVVLVLLLdfKRWWRPLLPLVIILFGVAWvLGIMGWLGIPLYATTLLAVPMLIGVGIDYGIQTLNRYEEERDigrAKGEA 284
|
90 100 110
....*....|....*....|....*....|....*..
gi 134254466 1049 AVLALEHMFAPVLDGAVSTLLGVLMLAGSEFDFIVRY 1085
Cdd:TIGR00921 285 IVTAVRRTGRAVLIALLTTSAGFAALALSEFPMVSEF 321
|
|
| PHA03377 |
PHA03377 |
EBNA-3C; Provisional |
1181-1303 |
4.34e-04 |
|
EBNA-3C; Provisional
Pssm-ID: 177614 [Multi-domain] Cd Length: 1000 Bit Score: 45.04 E-value: 4.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 1181 AGGPahQVIVEATENPVFAHSTVVHPES-RHHPPSNPRQ-QPHLDSGSLPPGRQGQQPRRDP-----PREGLW--PPPYR 1251
Cdd:PHA03377 695 AGRA--QPSEESHLSSMSPTQPISHEEQpRYEDPDDPLDlSLHPDQAPPPSHQAPYSGHEEPqaqqaPYPGYWepRPPQA 772
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 134254466 1252 PRRDAFEISTEGHSGPSNRARWGPRGARSHNPRNPASTAMGSSVPGYCQPIT 1303
Cdd:PHA03377 773 PYLGYQEPQAQGVQVSSYPGYAGPWGLRAQHPRYRHSWAYWSQYPGHGHPQG 824
|
|
| HpnN |
TIGR03480 |
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing ... |
335-530 |
5.01e-04 |
|
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Pssm-ID: 274598 [Multi-domain] Cd Length: 862 Bit Score: 44.60 E-value: 5.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 335 RTYVEVVhQSVAQNSTQKVLSFTTTTlDDILKSFsdvsvIRVASGYLLMLAYACLTMLRwdcSKSQGAVGLAGVLLVALS 414
Cdd:TIGR03480 683 RRFVRAV-RKVAPDATGAPVSILESG-DTVVGAF-----LQAFIYALVAITVLLLLTLR---RVRDVLLVLAPLLLAGLL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 415 VAAglgLCSLIGISFNAATTQVLPFLaLGVGVDDVFLLAHAFSEtGQNKRIPFEDRTGEclkrtgaSVALTSISNVTAFF 494
Cdd:TIGR03480 753 TVA---AMVLLGIPFNFANIIALPLL-LGLGVDFGIYMVHRWRN-GVDSGNLLQSSTAR-------AVFFSALTTATAFG 820
|
170 180 190
....*....|....*....|....*....|....*.
gi 134254466 495 MAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAIL 530
Cdd:TIGR03480 821 SLAVSSHPGTASMGILLSLGLGLTLLCTLIFLPALL 856
|
|
| MMPL |
pfam03176 |
MMPL family; Members of this family are putative integral membrane proteins from bacteria. ... |
401-532 |
4.05e-03 |
|
MMPL family; Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport.
Pssm-ID: 308676 [Multi-domain] Cd Length: 332 Bit Score: 41.12 E-value: 4.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 401 GAVGLAGVLL--VALSVAAGLGLCS-LIGISFNAATTQVLPF---LALGVGVD-DVFLLA--HAFSETGQNKripfEDRT 471
Cdd:pfam03176 164 RSVVAALLPLltVGLSLGAAQGLVAiLAHILGIGLSTFALNLlvvLLIAVGTDyALFLVSryREELRAGEDR----EEAV 239
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 134254466 472 GECLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSM 532
Cdd:pfam03176 240 IRAVRGTGKVVTAAGLTVAIAMLALSFARLPVFAQVGPTIAIGVLVDVLAALTLLPALLAL 300
|
|
| FucP |
COG0738 |
Fucose permease [Carbohydrate transport and metabolism]; |
962-1121 |
5.70e-03 |
|
Fucose permease [Carbohydrate transport and metabolism];
Pssm-ID: 440501 [Multi-domain] Cd Length: 391 Bit Score: 40.61 E-value: 5.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 962 LLLFISVVLACTFLVCAVFLLNPWTAGIIVMV-LALMTVelfgmmGLIGIKLSAVPVVILIASVGIGVEFT-VHVAL-AF 1038
Cdd:COG0738 47 LLLFAFFLGYLLASLPAGRLIDRFGYKRGLLLgLLLMAL------GLLLFALAPSYPLLLLALFLLGLGLGlLDVAAnPY 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 1039 LTAIGDKNRRAVLALEHMFAPVldGAVSTLLGVLMLAGSEFDFIVRYFFAVLAILTILGvlnglvllpVLLSFFGPYPEV 1118
Cdd:COG0738 121 VAALGPETAASRLNLLHAFFSL--GALLGPLLGGLLILLGLSLSWHLPYLILAVLLLLL---------ALLFLRSKLPEI 189
|
...
gi 134254466 1119 SPA 1121
Cdd:COG0738 190 EEE 192
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
970-1095 |
5.92e-03 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 40.98 E-value: 5.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 970 LACTFLVCAVFLL---NPWTAgiIVMVLALMTVELF--GMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFL---TA 1041
Cdd:TIGR00921 574 IAGAILVLMILLAvfrNPIKA--VFPLIAIGSGILWaiGLMGLRGIPSFLAMATTISIILGLGMDYSIHLAERYFeerKE 651
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 134254466 1042 IGDKNrrAVL-ALEHMFAPVLDGAVSTLLGVLMLAGSEFDFI--------VRYFFAVLAILTI 1095
Cdd:TIGR00921 652 HGPKE--AIThTMERTGPGILFSGLTTAGGFLSLLLSHFPIMrnfglvqgIGVLSSLTAALVV 712
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1163-1297 |
7.04e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 40.92 E-value: 7.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134254466 1163 TTVSGLSEELRhyeAQQGAGGPAHQVIVEATENPVFAHSTVVHP----------ESRHHPPSNPRQQPHLDSGslPPGRQ 1232
Cdd:PHA03307 129 SPAPDLSEMLR---PVGSPGPPPAASPPAAGASPAAVASDAASSrqaalplsspEETARAPSSPPAEPPPSTP--PAAAS 203
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 134254466 1233 GQQPRRDPPR--EGLWPPPYRPRRDAFEISTE---GHSGPSNRARWGPRGA--RSHNPRNPASTAMGSSVPG 1297
Cdd:PHA03307 204 PRPPRRSSPIsaSASSPAPAPGRSAADDAGASssdSSSSESSGCGWGPENEcpLPRPAPITLPTRIWEASGW 275
|
|
| |
