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Conserved domains on  [gi|130507929|ref|NP_001076410|]
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zinc finger BED domain-containing protein 4 [Danio rerio]

Protein Classification

zf-BED and Dimer_Tnp_hAT domain-containing protein( domain architecture ID 10502528)

zf-BED and Dimer_Tnp_hAT domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-BED pfam02892
BED zinc finger;
205-253 1.92e-15

BED zinc finger;


:

Pssm-ID: 427043  Cd Length: 44  Bit Score: 71.24  E-value: 1.92e-15
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 130507929   205 SPAWNHFFISPRDSTKAICMYCMKEFSRGKNekdlsTSCLMRHVRRAHP 253
Cdd:pfam02892    1 SKVWKYFRELPLDETKAVCRYCGKILSRGGG-----TSNLIRHLRRKHP 44
zf-BED pfam02892
BED zinc finger;
368-414 2.66e-13

BED zinc finger;


:

Pssm-ID: 427043  Cd Length: 44  Bit Score: 65.08  E-value: 2.66e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 130507929   368 VWKHFYLSPADSSKAVCIHCMNEFSRGKngkdlGTSCLIRHMWRAHR 414
Cdd:pfam02892    3 VWKYFRELPLDETKAVCRYCGKILSRGG-----GTSNLIRHLRRKHP 44
zf-BED pfam02892
BED zinc finger;
537-584 1.12e-11

BED zinc finger;


:

Pssm-ID: 427043  Cd Length: 44  Bit Score: 60.46  E-value: 1.12e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 130507929   537 SEVWHHFIVSPVDQLKALCRYCPCVISRGKrgdfGTSCLMRHLMRRHP 584
Cdd:pfam02892    1 SKVWKYFRELPLDETKAVCRYCGKILSRGG----GTSNLIRHLRRKHP 44
zf-BED pfam02892
BED zinc finger;
634-681 2.50e-11

BED zinc finger;


:

Pssm-ID: 427043  Cd Length: 44  Bit Score: 59.69  E-value: 2.50e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 130507929   634 SKLWNHFSISSADPTKVVCLHCSRTISRGKkttnlGTSCLFRHMQRFH 681
Cdd:pfam02892    1 SKVWKYFRELPLDETKAVCRYCGKILSRGG-----GTSNLIRHLRRKH 43
Dimer_Tnp_hAT super family cl05324
hAT family C-terminal dimerization region; This dimerization region is found at the C terminus ...
 1165-1242 3.59e-06

hAT family C-terminal dimerization region; This dimerization region is found at the C terminus of the transposases of elements belonging to the Activator superfamily (hAT element superfamily). The isolated dimerization region forms extremely stable dimers in vitro.


The actual alignment was detected with superfamily member pfam05699:

Pssm-ID: 399013  Cd Length: 83  Bit Score: 46.10  E-value: 3.59e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130507929  1165 EYLEEDILDQSC--DPLDYWNLKKLLWPDLAKVAVRYVGCPPSIVPADTLFSTSTVNCALNQSRPLLENFEGLLFLKVNL 1242
Cdd:pfam05699    4 QYLSEPVLPRNEdfDPLEWWKENSSRYPNLSKLARDILSIPVSSAASERSFSTLGKVILESRNRLEPLNVEALLCIEDWL 83
 
Name Accession Description Interval E-value
zf-BED pfam02892
BED zinc finger;
205-253 1.92e-15

BED zinc finger;


Pssm-ID: 427043  Cd Length: 44  Bit Score: 71.24  E-value: 1.92e-15
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 130507929   205 SPAWNHFFISPRDSTKAICMYCMKEFSRGKNekdlsTSCLMRHVRRAHP 253
Cdd:pfam02892    1 SKVWKYFRELPLDETKAVCRYCGKILSRGGG-----TSNLIRHLRRKHP 44
zf-BED pfam02892
BED zinc finger;
368-414 2.66e-13

BED zinc finger;


Pssm-ID: 427043  Cd Length: 44  Bit Score: 65.08  E-value: 2.66e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 130507929   368 VWKHFYLSPADSSKAVCIHCMNEFSRGKngkdlGTSCLIRHMWRAHR 414
Cdd:pfam02892    3 VWKYFRELPLDETKAVCRYCGKILSRGG-----GTSNLIRHLRRKHP 44
zf-BED pfam02892
BED zinc finger;
537-584 1.12e-11

BED zinc finger;


Pssm-ID: 427043  Cd Length: 44  Bit Score: 60.46  E-value: 1.12e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 130507929   537 SEVWHHFIVSPVDQLKALCRYCPCVISRGKrgdfGTSCLMRHLMRRHP 584
Cdd:pfam02892    1 SKVWKYFRELPLDETKAVCRYCGKILSRGG----GTSNLIRHLRRKHP 44
zf-BED pfam02892
BED zinc finger;
634-681 2.50e-11

BED zinc finger;


Pssm-ID: 427043  Cd Length: 44  Bit Score: 59.69  E-value: 2.50e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 130507929   634 SKLWNHFSISSADPTKVVCLHCSRTISRGKkttnlGTSCLFRHMQRFH 681
Cdd:pfam02892    1 SKVWKYFRELPLDETKAVCRYCGKILSRGG-----GTSNLIRHLRRKH 43
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 538-586 8.76e-11

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 58.21  E-value: 8.76e-11
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|..
gi 130507929    538 EVWHHFI-VSPVDQLK--ALCRYCPCVISRGKRGdfGTSCLMRHLMRRHPDV 586
Cdd:smart00614    1 KVWKHFTlILEKDNGKqrAKCKYCGKKLSRSSKG--GTSNLRRHLRRKHPAR 50
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 368-416 1.44e-10

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 57.44  E-value: 1.44e-10
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|..
gi 130507929    368 VWKHFYLSPADSS---KAVCIHCMNEFSRGKNGkdlGTSCLIRHMWRAHRDI 416
Cdd:smart00614    2 VWKHFTLILEKDNgkqRAKCKYCGKKLSRSSKG---GTSNLRRHLRRKHPAR 50
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 207-255 4.67e-10

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 56.28  E-value: 4.67e-10
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|..
gi 130507929    207 AWNHF-FISPRDSTK--AICMYCMKEFSRGKNekdLSTSCLMRHVRRAHPSV 255
Cdd:smart00614    2 VWKHFtLILEKDNGKqrAKCKYCGKKLSRSSK---GGTSNLRRHLRRKHPAR 50
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 635-681 6.24e-08

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 50.12  E-value: 6.24e-08
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|
gi 130507929    635 KLWNHFS-ISSADPTK--VVCLHCSRTISRGKKTtnlGTSCLFRHMQRFH 681
Cdd:smart00614    1 KVWKHFTlILEKDNGKqrAKCKYCGKKLSRSSKG---GTSNLRRHLRRKH 47
Dimer_Tnp_hAT pfam05699
hAT family C-terminal dimerization region; This dimerization region is found at the C terminus ...
 1165-1242 3.59e-06

hAT family C-terminal dimerization region; This dimerization region is found at the C terminus of the transposases of elements belonging to the Activator superfamily (hAT element superfamily). The isolated dimerization region forms extremely stable dimers in vitro.


Pssm-ID: 399013  Cd Length: 83  Bit Score: 46.10  E-value: 3.59e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130507929  1165 EYLEEDILDQSC--DPLDYWNLKKLLWPDLAKVAVRYVGCPPSIVPADTLFSTSTVNCALNQSRPLLENFEGLLFLKVNL 1242
Cdd:pfam05699    4 QYLSEPVLPRNEdfDPLEWWKENSSRYPNLSKLARDILSIPVSSAASERSFSTLGKVILESRNRLEPLNVEALLCIEDWL 83
 
Name Accession Description Interval E-value
zf-BED pfam02892
BED zinc finger;
205-253 1.92e-15

BED zinc finger;


Pssm-ID: 427043  Cd Length: 44  Bit Score: 71.24  E-value: 1.92e-15
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 130507929   205 SPAWNHFFISPRDSTKAICMYCMKEFSRGKNekdlsTSCLMRHVRRAHP 253
Cdd:pfam02892    1 SKVWKYFRELPLDETKAVCRYCGKILSRGGG-----TSNLIRHLRRKHP 44
zf-BED pfam02892
BED zinc finger;
368-414 2.66e-13

BED zinc finger;


Pssm-ID: 427043  Cd Length: 44  Bit Score: 65.08  E-value: 2.66e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 130507929   368 VWKHFYLSPADSSKAVCIHCMNEFSRGKngkdlGTSCLIRHMWRAHR 414
Cdd:pfam02892    3 VWKYFRELPLDETKAVCRYCGKILSRGG-----GTSNLIRHLRRKHP 44
zf-BED pfam02892
BED zinc finger;
537-584 1.12e-11

BED zinc finger;


Pssm-ID: 427043  Cd Length: 44  Bit Score: 60.46  E-value: 1.12e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 130507929   537 SEVWHHFIVSPVDQLKALCRYCPCVISRGKrgdfGTSCLMRHLMRRHP 584
Cdd:pfam02892    1 SKVWKYFRELPLDETKAVCRYCGKILSRGG----GTSNLIRHLRRKHP 44
zf-BED pfam02892
BED zinc finger;
634-681 2.50e-11

BED zinc finger;


Pssm-ID: 427043  Cd Length: 44  Bit Score: 59.69  E-value: 2.50e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 130507929   634 SKLWNHFSISSADPTKVVCLHCSRTISRGKkttnlGTSCLFRHMQRFH 681
Cdd:pfam02892    1 SKVWKYFRELPLDETKAVCRYCGKILSRGG-----GTSNLIRHLRRKH 43
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 538-586 8.76e-11

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 58.21  E-value: 8.76e-11
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|..
gi 130507929    538 EVWHHFI-VSPVDQLK--ALCRYCPCVISRGKRGdfGTSCLMRHLMRRHPDV 586
Cdd:smart00614    1 KVWKHFTlILEKDNGKqrAKCKYCGKKLSRSSKG--GTSNLRRHLRRKHPAR 50
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 368-416 1.44e-10

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 57.44  E-value: 1.44e-10
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|..
gi 130507929    368 VWKHFYLSPADSS---KAVCIHCMNEFSRGKNGkdlGTSCLIRHMWRAHRDI 416
Cdd:smart00614    2 VWKHFTLILEKDNgkqRAKCKYCGKKLSRSSKG---GTSNLRRHLRRKHPAR 50
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 207-255 4.67e-10

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 56.28  E-value: 4.67e-10
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|..
gi 130507929    207 AWNHF-FISPRDSTK--AICMYCMKEFSRGKNekdLSTSCLMRHVRRAHPSV 255
Cdd:smart00614    2 VWKHFtLILEKDNGKqrAKCKYCGKKLSRSSK---GGTSNLRRHLRRKHPAR 50
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 635-681 6.24e-08

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 50.12  E-value: 6.24e-08
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|
gi 130507929    635 KLWNHFS-ISSADPTK--VVCLHCSRTISRGKKTtnlGTSCLFRHMQRFH 681
Cdd:smart00614    1 KVWKHFTlILEKDNGKqrAKCKYCGKKLSRSSKG---GTSNLRRHLRRKH 47
Dimer_Tnp_hAT pfam05699
hAT family C-terminal dimerization region; This dimerization region is found at the C terminus ...
 1165-1242 3.59e-06

hAT family C-terminal dimerization region; This dimerization region is found at the C terminus of the transposases of elements belonging to the Activator superfamily (hAT element superfamily). The isolated dimerization region forms extremely stable dimers in vitro.


Pssm-ID: 399013  Cd Length: 83  Bit Score: 46.10  E-value: 3.59e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130507929  1165 EYLEEDILDQSC--DPLDYWNLKKLLWPDLAKVAVRYVGCPPSIVPADTLFSTSTVNCALNQSRPLLENFEGLLFLKVNL 1242
Cdd:pfam05699    4 QYLSEPVLPRNEdfDPLEWWKENSSRYPNLSKLARDILSIPVSSAASERSFSTLGKVILESRNRLEPLNVEALLCIEDWL 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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