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Conserved domains on  [gi|123704498|ref|NP_001074051|]
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matrix remodeling-associated protein 8a precursor [Danio rerio]

Protein Classification

immunoglobulin domain-containing protein( domain architecture ID 10309807)

immunoglobulin (Ig) domain-containing protein with one or more Ig domains, which adopt a fold comprised of a sandwich of two beta sheets and may function in cell adhesion and/or pattern recognition; similar to matrix remodeling-associated protein 8 which can modulate activity of various signaling pathways, probably via binding to integrin ITGAV:ITGB3

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
V-set pfam07686
Immunoglobulin V-set domain; This domain is found in antibodies as well as neural protein P0 ...
 199-294 8.10e-09

Immunoglobulin V-set domain; This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.


:

Pssm-ID: 462230  Cd Length: 109  Bit Score: 53.23  E-value: 8.10e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123704498  199 NSQEDQQQVVHWDRQPPGVRHDRadrLIDLYasgeRRHYGPLFVQQKMNISATaFTQGDFSLIISNIQLLDQGIYSCHLH 278
Cdd:pfam07686  22 SSMSEASTSVYWYRQPPGKGPTF---LIAYY----SNGSEEGVKKGRFSGRGD-PSNGDGSLTIQNLTLSDSGTYTCAVI 93

                          90
                  ....*....|....*.
gi 123704498  279 HHYCGlHERRIFQLTV 294
Cdd:pfam07686  94 PSGEG-VFGKGTRLTV 108
Ig super family cl11960
Immunoglobulin domain; The members here are composed of the immunoglobulin (Ig) domain found ...
 47-157 1.71e-05

Immunoglobulin domain; The members here are composed of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, including T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, including butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Ig superfamily (IgSF) domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. Typically, the V-set domains have A, B, E, and D strands in one sheet and A', G, F, C, C' and C" in the other. The structures in C1-set are smaller than those in the V-set; they have one beta sheet that is formed by strands A, B, E, and D and the other by strands G, F, C, and C'. Moreover, a C1-set Ig domain contains a short C' strand (three residues) and lacks A' and C" strand. Unlike other Ig domain sets, C2-set structures do not have a D strand. Like the V-set Ig domains, members of the I-set have a discontinuous A strand, but lack a C" strand.


The actual alignment was detected with superfamily member cd20960:

Pssm-ID: 472250  Cd Length: 114  Bit Score: 43.98  E-value: 1.71e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123704498  47 QGSQAVLQCHSQRMVWTQDRLKdrqrvVHWDLLRSgpDHAmERVVDMFSAGdqRIYNGYN---QGRISMSkTAFKDGNFS 123
Cdd:cd20960   14 AGENVTLPCHHQLGLEDQGTLD-----IEWLLLPS--DKV-EKVVITYSGD--RVYNHYYpalKGRVAFT-SNDLSGDAS 82

                         90       100       110
                 ....*....|....*....|....*....|....
gi 123704498 124 MVIKDVVTSDKGIYSCNLHHhyCHLYESVKIQLN 157
Cdd:cd20960   83 LNISNLKLSDTGTYQCKVKK--APGYAWSKITLI 114
 
Name Accession Description Interval E-value
V-set pfam07686
Immunoglobulin V-set domain; This domain is found in antibodies as well as neural protein P0 ...
 199-294 8.10e-09

Immunoglobulin V-set domain; This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.


Pssm-ID: 462230  Cd Length: 109  Bit Score: 53.23  E-value: 8.10e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123704498  199 NSQEDQQQVVHWDRQPPGVRHDRadrLIDLYasgeRRHYGPLFVQQKMNISATaFTQGDFSLIISNIQLLDQGIYSCHLH 278
Cdd:pfam07686  22 SSMSEASTSVYWYRQPPGKGPTF---LIAYY----SNGSEEGVKKGRFSGRGD-PSNGDGSLTIQNLTLSDSGTYTCAVI 93

                          90
                  ....*....|....*.
gi 123704498  279 HHYCGlHERRIFQLTV 294
Cdd:pfam07686  94 PSGEG-VFGKGTRLTV 108
IgV_CAR_like cd20960
Immunoglobulin Variable (V) domain of the Coxsackievirus and Adenovirus Receptor (CAR), and ...
 47-157 1.71e-05

Immunoglobulin Variable (V) domain of the Coxsackievirus and Adenovirus Receptor (CAR), and similar proteins; The members here are composed of the Variable (V) domain of the Coxsackievirus and Adenovirus Receptor (CAR), and similar proteins. CAR, which is encoded by human CXADR gene, is a cell adhesion molecule of the Immunoglobulin (Ig) superfamily. The CAR acts as a type I membrane receptor for group B1-B6 coxsackie viruses and subgroup C adenoviruses. For instance, adenovirus interacts with the coxsackievirus and adenovirus receptor to enter epithelial airway cells. The CAR is also shown to be involved in physiological processes such as neuronal and heart development, epithelial tight junction integrity, and tumor suppression. The CAR is a component of the epithelial apical junction complex that may function as a homophilic cell adhesion molecule and is essential for tight junction integrity. The CAR is also involved in transepithelial migration of leukocytes through adhesive interactions with JAML a transmembrane protein of the plasma membrane of leukocytes. The interaction between both receptors also mediates the activation of gamma-delta T-cells, a subpopulation of T-cells residing in epithelia and involved in tissue homeostasis and repair. The CAR is composed of one V-set and one C2-set Ig module, a single transmembrane helix, and an intracellular domain. This group belongs to the V-set of IgSF domains, having A, B, E and D strands in one beta-sheet and A', G, F, C, C' and C" in the other


Pssm-ID: 409552  Cd Length: 114  Bit Score: 43.98  E-value: 1.71e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123704498  47 QGSQAVLQCHSQRMVWTQDRLKdrqrvVHWDLLRSgpDHAmERVVDMFSAGdqRIYNGYN---QGRISMSkTAFKDGNFS 123
Cdd:cd20960   14 AGENVTLPCHHQLGLEDQGTLD-----IEWLLLPS--DKV-EKVVITYSGD--RVYNHYYpalKGRVAFT-SNDLSGDAS 82

                         90       100       110
                 ....*....|....*....|....*....|....
gi 123704498 124 MVIKDVVTSDKGIYSCNLHHhyCHLYESVKIQLN 157
Cdd:cd20960   83 LNISNLKLSDTGTYQCKVKK--APGYAWSKITLI 114
V-set pfam07686
Immunoglobulin V-set domain; This domain is found in antibodies as well as neural protein P0 ...
 43-159 2.79e-05

Immunoglobulin V-set domain; This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.


Pssm-ID: 462230  Cd Length: 109  Bit Score: 43.22  E-value: 2.79e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123704498   43 ISAPQGSQAVLQCH-SQRMVWTQDRlkdrqrvVHWdlLRSGPDHAMERVVDMFSAGDQriyNGYNQGRISMSKTaFKDGN 121
Cdd:pfam07686   6 VTVALGGSVTLPCTySSSMSEASTS-------VYW--YRQPPGKGPTFLIAYYSNGSE---EGVKKGRFSGRGD-PSNGD 72

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 123704498  122 FSMVIKDVVTSDKGIYSCNLHHHYCHLYESvKIQLNVT 159
Cdd:pfam07686  73 GSLTIQNLTLSDSGTYTCAVIPSGEGVFGK-GTRLTVL 109
IgV_CAR_like cd20960
Immunoglobulin Variable (V) domain of the Coxsackievirus and Adenovirus Receptor (CAR), and ...
 200-275 1.71e-04

Immunoglobulin Variable (V) domain of the Coxsackievirus and Adenovirus Receptor (CAR), and similar proteins; The members here are composed of the Variable (V) domain of the Coxsackievirus and Adenovirus Receptor (CAR), and similar proteins. CAR, which is encoded by human CXADR gene, is a cell adhesion molecule of the Immunoglobulin (Ig) superfamily. The CAR acts as a type I membrane receptor for group B1-B6 coxsackie viruses and subgroup C adenoviruses. For instance, adenovirus interacts with the coxsackievirus and adenovirus receptor to enter epithelial airway cells. The CAR is also shown to be involved in physiological processes such as neuronal and heart development, epithelial tight junction integrity, and tumor suppression. The CAR is a component of the epithelial apical junction complex that may function as a homophilic cell adhesion molecule and is essential for tight junction integrity. The CAR is also involved in transepithelial migration of leukocytes through adhesive interactions with JAML a transmembrane protein of the plasma membrane of leukocytes. The interaction between both receptors also mediates the activation of gamma-delta T-cells, a subpopulation of T-cells residing in epithelia and involved in tissue homeostasis and repair. The CAR is composed of one V-set and one C2-set Ig module, a single transmembrane helix, and an intracellular domain. This group belongs to the V-set of IgSF domains, having A, B, E and D strands in one beta-sheet and A', G, F, C, C' and C" in the other


Pssm-ID: 409552  Cd Length: 114  Bit Score: 40.90  E-value: 1.71e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 123704498 200 SQEDQQQV-VHWDRQPPgvrhDRADRLIDLYASGerRHYGPLFVQQKMNIS-ATAFTQGDFSLIISNIQLLDQGIYSC 275
Cdd:cd20960   27 GLEDQGTLdIEWLLLPS----DKVEKVVITYSGD--RVYNHYYPALKGRVAfTSNDLSGDASLNISNLKLSDTGTYQC 98
IGv smart00406
Immunoglobulin V-Type;
73-139 8.04e-04

Immunoglobulin V-Type;


Pssm-ID: 214650  Cd Length: 81  Bit Score: 38.13  E-value: 8.04e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 123704498    73 VVHWdlLRSGPDHAMErVVDMFSAGDQRIYNGYNQGRISMSKTAFKdGNFSMVIKDVVTSDKGIYSC 139
Cdd:smart00406  17 YVSW--VRQPPGKGLE-WLGYIGSNGSSYYQESYKGRFTISKDTSK-NDVSLTISNLRVEDTGTYYC 79
IGv smart00406
Immunoglobulin V-Type;
206-275 1.38e-03

Immunoglobulin V-Type;


Pssm-ID: 214650  Cd Length: 81  Bit Score: 37.36  E-value: 1.38e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123704498   206 QVVHWDRQPPGvrhdRADRLIdLYASGERRHYGPLFVQQKMNISATaFTQGDFSLIISNIQLLDQGIYSC 275
Cdd:smart00406  16 YYVSWVRQPPG----KGLEWL-GYIGSNGSSYYQESYKGRFTISKD-TSKNDVSLTISNLRVEDTGTYYC 79
 
Name Accession Description Interval E-value
V-set pfam07686
Immunoglobulin V-set domain; This domain is found in antibodies as well as neural protein P0 ...
 199-294 8.10e-09

Immunoglobulin V-set domain; This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.


Pssm-ID: 462230  Cd Length: 109  Bit Score: 53.23  E-value: 8.10e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123704498  199 NSQEDQQQVVHWDRQPPGVRHDRadrLIDLYasgeRRHYGPLFVQQKMNISATaFTQGDFSLIISNIQLLDQGIYSCHLH 278
Cdd:pfam07686  22 SSMSEASTSVYWYRQPPGKGPTF---LIAYY----SNGSEEGVKKGRFSGRGD-PSNGDGSLTIQNLTLSDSGTYTCAVI 93

                          90
                  ....*....|....*.
gi 123704498  279 HHYCGlHERRIFQLTV 294
Cdd:pfam07686  94 PSGEG-VFGKGTRLTV 108
IgV_CAR_like cd20960
Immunoglobulin Variable (V) domain of the Coxsackievirus and Adenovirus Receptor (CAR), and ...
 47-157 1.71e-05

Immunoglobulin Variable (V) domain of the Coxsackievirus and Adenovirus Receptor (CAR), and similar proteins; The members here are composed of the Variable (V) domain of the Coxsackievirus and Adenovirus Receptor (CAR), and similar proteins. CAR, which is encoded by human CXADR gene, is a cell adhesion molecule of the Immunoglobulin (Ig) superfamily. The CAR acts as a type I membrane receptor for group B1-B6 coxsackie viruses and subgroup C adenoviruses. For instance, adenovirus interacts with the coxsackievirus and adenovirus receptor to enter epithelial airway cells. The CAR is also shown to be involved in physiological processes such as neuronal and heart development, epithelial tight junction integrity, and tumor suppression. The CAR is a component of the epithelial apical junction complex that may function as a homophilic cell adhesion molecule and is essential for tight junction integrity. The CAR is also involved in transepithelial migration of leukocytes through adhesive interactions with JAML a transmembrane protein of the plasma membrane of leukocytes. The interaction between both receptors also mediates the activation of gamma-delta T-cells, a subpopulation of T-cells residing in epithelia and involved in tissue homeostasis and repair. The CAR is composed of one V-set and one C2-set Ig module, a single transmembrane helix, and an intracellular domain. This group belongs to the V-set of IgSF domains, having A, B, E and D strands in one beta-sheet and A', G, F, C, C' and C" in the other


Pssm-ID: 409552  Cd Length: 114  Bit Score: 43.98  E-value: 1.71e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123704498  47 QGSQAVLQCHSQRMVWTQDRLKdrqrvVHWDLLRSgpDHAmERVVDMFSAGdqRIYNGYN---QGRISMSkTAFKDGNFS 123
Cdd:cd20960   14 AGENVTLPCHHQLGLEDQGTLD-----IEWLLLPS--DKV-EKVVITYSGD--RVYNHYYpalKGRVAFT-SNDLSGDAS 82

                         90       100       110
                 ....*....|....*....|....*....|....
gi 123704498 124 MVIKDVVTSDKGIYSCNLHHhyCHLYESVKIQLN 157
Cdd:cd20960   83 LNISNLKLSDTGTYQCKVKK--APGYAWSKITLI 114
V-set pfam07686
Immunoglobulin V-set domain; This domain is found in antibodies as well as neural protein P0 ...
 43-159 2.79e-05

Immunoglobulin V-set domain; This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.


Pssm-ID: 462230  Cd Length: 109  Bit Score: 43.22  E-value: 2.79e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123704498   43 ISAPQGSQAVLQCH-SQRMVWTQDRlkdrqrvVHWdlLRSGPDHAMERVVDMFSAGDQriyNGYNQGRISMSKTaFKDGN 121
Cdd:pfam07686   6 VTVALGGSVTLPCTySSSMSEASTS-------VYW--YRQPPGKGPTFLIAYYSNGSE---EGVKKGRFSGRGD-PSNGD 72

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 123704498  122 FSMVIKDVVTSDKGIYSCNLHHHYCHLYESvKIQLNVT 159
Cdd:pfam07686  73 GSLTIQNLTLSDSGTYTCAVIPSGEGVFGK-GTRLTVL 109
IgV_CAR_like cd20960
Immunoglobulin Variable (V) domain of the Coxsackievirus and Adenovirus Receptor (CAR), and ...
 200-275 1.71e-04

Immunoglobulin Variable (V) domain of the Coxsackievirus and Adenovirus Receptor (CAR), and similar proteins; The members here are composed of the Variable (V) domain of the Coxsackievirus and Adenovirus Receptor (CAR), and similar proteins. CAR, which is encoded by human CXADR gene, is a cell adhesion molecule of the Immunoglobulin (Ig) superfamily. The CAR acts as a type I membrane receptor for group B1-B6 coxsackie viruses and subgroup C adenoviruses. For instance, adenovirus interacts with the coxsackievirus and adenovirus receptor to enter epithelial airway cells. The CAR is also shown to be involved in physiological processes such as neuronal and heart development, epithelial tight junction integrity, and tumor suppression. The CAR is a component of the epithelial apical junction complex that may function as a homophilic cell adhesion molecule and is essential for tight junction integrity. The CAR is also involved in transepithelial migration of leukocytes through adhesive interactions with JAML a transmembrane protein of the plasma membrane of leukocytes. The interaction between both receptors also mediates the activation of gamma-delta T-cells, a subpopulation of T-cells residing in epithelia and involved in tissue homeostasis and repair. The CAR is composed of one V-set and one C2-set Ig module, a single transmembrane helix, and an intracellular domain. This group belongs to the V-set of IgSF domains, having A, B, E and D strands in one beta-sheet and A', G, F, C, C' and C" in the other


Pssm-ID: 409552  Cd Length: 114  Bit Score: 40.90  E-value: 1.71e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 123704498 200 SQEDQQQV-VHWDRQPPgvrhDRADRLIDLYASGerRHYGPLFVQQKMNIS-ATAFTQGDFSLIISNIQLLDQGIYSC 275
Cdd:cd20960   27 GLEDQGTLdIEWLLLPS----DKVEKVVITYSGD--RVYNHYYPALKGRVAfTSNDLSGDASLNISNLKLSDTGTYQC 98
IgV cd00099
Immunoglobulin variable domain (IgV); The members here are composed of the immunoglobulin ...
 208-275 6.41e-04

Immunoglobulin variable domain (IgV); The members here are composed of the immunoglobulin variable domain (IgV). The IgV family contains the standard Ig superfamily V-set AGFCC'C"/DEB domain topology, and are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. Ig superfamily (IgSF) domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. Typically, the V-set domains have A, B, E and, D strands in one sheet and A', G, F, C, C', and C" strands in the other.


Pssm-ID: 409355 [Multi-domain]  Cd Length: 111  Bit Score: 39.24  E-value: 6.41e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 123704498 208 VHWDRQPPGVRHdradRLIdLYASGERRHYGPLFvqqKMNISATAFTQGDFSLIISNIQLLDQGIYSC 275
Cdd:cd00099   31 IYWYRQKPGQGP----EFL-IYLSSSKGKTKGGV---PGRFSGSRDGTSSFSLTISNLQPEDSGTYYC 90
IGv smart00406
Immunoglobulin V-Type;
73-139 8.04e-04

Immunoglobulin V-Type;


Pssm-ID: 214650  Cd Length: 81  Bit Score: 38.13  E-value: 8.04e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 123704498    73 VVHWdlLRSGPDHAMErVVDMFSAGDQRIYNGYNQGRISMSKTAFKdGNFSMVIKDVVTSDKGIYSC 139
Cdd:smart00406  17 YVSW--VRQPPGKGLE-WLGYIGSNGSSYYQESYKGRFTISKDTSK-NDVSLTISNLRVEDTGTYYC 79
IGv smart00406
Immunoglobulin V-Type;
206-275 1.38e-03

Immunoglobulin V-Type;


Pssm-ID: 214650  Cd Length: 81  Bit Score: 37.36  E-value: 1.38e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123704498   206 QVVHWDRQPPGvrhdRADRLIdLYASGERRHYGPLFVQQKMNISATaFTQGDFSLIISNIQLLDQGIYSC 275
Cdd:smart00406  16 YYVSWVRQPPG----KGLEWL-GYIGSNGSSYYQESYKGRFTISKD-TSKNDVSLTISNLRVEDTGTYYC 79
Ig_CSPGs_LP_like cd05714
Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage ...
 43-141 4.47e-03

Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP), and similar domains; The members here are composed of the immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs, this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. There is considerable evidence that HA-binding CSPGs are involved in developmental processes in the central nervous system. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.


Pssm-ID: 409379  Cd Length: 123  Bit Score: 37.19  E-value: 4.47e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123704498  43 ISAPQGSQAVLQCHSQRMVWTQDRLKDRQRVvHWDLLRSGPDHAMErvVDMFSAGDQRIYNGYN-QGRISMSKTAFKDGN 121
Cdd:cd05714    7 VFSHLGGNVTLPCKFYRDPTAFGSGIHKIRI-KWTKLTSDSGYLKE--VDVLVAMGNVVYHKKTyGGRVSVPLKPGSDSD 83

                         90       100
                 ....*....|....*....|
gi 123704498 122 FSMVIKDVVTSDKGIYSCNL 141
Cdd:cd05714   84 ASLVITDLTASDYGLYRCEV 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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