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Conserved domains on  [gi|350276194|ref|NP_001037949|]
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zinc finger CCCH domain-containing protein 3 [Xenopus tropicalis]

Protein Classification

zinc finger CCCH domain-containing protein( domain architecture ID 708395)

zinc finger CCCH domain-containing protein similar to cleavage and polyadenylation specificity factor (CPSF) subunit 4, which is part of the complex that plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YTH1 super family cl25862
Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin ...
 613-732 9.63e-13

Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only];


The actual alignment was detected with superfamily member COG5084:

Pssm-ID: 227416 [Multi-domain]  Cd Length: 285  Bit Score: 69.51  E-value: 9.63e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194 613 YCMYYNRFGKCNRGQNCPFIHDPEKVA---VCTRFLRGTCKKTDGtCPFSHKVS--KDKMPVCSYF-LKGICHN-NDCPY 685
Cdd:COG5084   76 ACISRNFNSIRGSRLSTPNNHVNPVLSssvVCKFFLRGLCKSGFS-CEFLHEYDlrSSQGPPCRSFsLKGSCSSgPSCGY 154

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 350276194 686 SHVYVSRKAEICK---DFLKGYCPLGAKCKKKHTLQ--------CPDYaRDGKCPNGA 732
Cdd:COG5084  155 SHIDPDSFAGNCDqysGATYGFCPLGASCKFSHTLKrvsygsspCGNY-TPPFSPPGT 211
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 29-499 1.88e-06

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 1.88e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194   29 PAPPAPASTRWRNPAQPPYRAQGAFRGGHTQRAGgfigpAQEQPNQGwknkyslvnrtvlaSTGTADAGNKGGRAATTAL 108
Cdd:PHA03247 2557 PAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPD-----APPQSARP--------------RAPVDDRGDPRGPAPPSPL 2617

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  109 SPvcltATVAQKSQAALSVPATEQSKLTSKGSTNSLPKPKAQTAPS-----KQTSAKHLAPTAT-PAQSAQRVGAPTAGG 182
Cdd:PHA03247 2618 PP----DTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGrvsrpRRARRLGRAAQASsPPQRPRRRAARPTVG 2693

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  183 S--SVAGKH------QKRPPSQTICISSQESVRLHSQAAVPKPANPVPRTASSDSrgATPSNYIYSPPKPAASPPAPAKI 254
Cdd:PHA03247 2694 SltSLADPPpppptpEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGP--ATPGGPARPARPPTTAGPPAPAP 2771

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  255 PKVRKTKytwvANSAKTSLAGKKLSPGGKKLNEENDKGQSPAASMAAPKKKVGVAPKSGTVrnrykwkaesPGPTAKVHS 334
Cdd:PHA03247 2772 PAAPAAG----PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPL----------PPPTSAQPT 2837

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  335 AKKTQEPPVQTTPK----ASPHLLFKGQGPPTAPKLPLRDSAHSHYKVKSRTKIIRRRSSSSSPTDKKASPLAPvsvrsr 410
Cdd:PHA03247 2838 APPPPPGPPPPSLPlggsVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQP------ 2911

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  411 yclrrrSSPRVKSPVVQRRSSPRGLIHITKHKLRRLPPSKQHDPTKAGPPTTAMRSPPSSRVIKTRYRIVKKNVSALHPA 490
Cdd:PHA03247 2912 ------QAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPS 2985


                  ....*....
gi 350276194  491 SPFSPFSPS 499
Cdd:PHA03247 2986 REAPASSTP 2994
 
Name Accession Description Interval E-value
YTH1 COG5084
Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin ...
 613-732 9.63e-13

Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only];


Pssm-ID: 227416 [Multi-domain]  Cd Length: 285  Bit Score: 69.51  E-value: 9.63e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194 613 YCMYYNRFGKCNRGQNCPFIHDPEKVA---VCTRFLRGTCKKTDGtCPFSHKVS--KDKMPVCSYF-LKGICHN-NDCPY 685
Cdd:COG5084   76 ACISRNFNSIRGSRLSTPNNHVNPVLSssvVCKFFLRGLCKSGFS-CEFLHEYDlrSSQGPPCRSFsLKGSCSSgPSCGY 154

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 350276194 686 SHVYVSRKAEICK---DFLKGYCPLGAKCKKKHTLQ--------CPDYaRDGKCPNGA 732
Cdd:COG5084  155 SHIDPDSFAGNCDqysGATYGFCPLGASCKFSHTLKrvsygsspCGNY-TPPFSPPGT 211
PHA03247 PHA03247
large tegument protein UL36; Provisional
 29-499 1.88e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 1.88e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194   29 PAPPAPASTRWRNPAQPPYRAQGAFRGGHTQRAGgfigpAQEQPNQGwknkyslvnrtvlaSTGTADAGNKGGRAATTAL 108
Cdd:PHA03247 2557 PAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPD-----APPQSARP--------------RAPVDDRGDPRGPAPPSPL 2617

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  109 SPvcltATVAQKSQAALSVPATEQSKLTSKGSTNSLPKPKAQTAPS-----KQTSAKHLAPTAT-PAQSAQRVGAPTAGG 182
Cdd:PHA03247 2618 PP----DTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGrvsrpRRARRLGRAAQASsPPQRPRRRAARPTVG 2693

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  183 S--SVAGKH------QKRPPSQTICISSQESVRLHSQAAVPKPANPVPRTASSDSrgATPSNYIYSPPKPAASPPAPAKI 254
Cdd:PHA03247 2694 SltSLADPPpppptpEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGP--ATPGGPARPARPPTTAGPPAPAP 2771

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  255 PKVRKTKytwvANSAKTSLAGKKLSPGGKKLNEENDKGQSPAASMAAPKKKVGVAPKSGTVrnrykwkaesPGPTAKVHS 334
Cdd:PHA03247 2772 PAAPAAG----PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPL----------PPPTSAQPT 2837

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  335 AKKTQEPPVQTTPK----ASPHLLFKGQGPPTAPKLPLRDSAHSHYKVKSRTKIIRRRSSSSSPTDKKASPLAPvsvrsr 410
Cdd:PHA03247 2838 APPPPPGPPPPSLPlggsVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQP------ 2911

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  411 yclrrrSSPRVKSPVVQRRSSPRGLIHITKHKLRRLPPSKQHDPTKAGPPTTAMRSPPSSRVIKTRYRIVKKNVSALHPA 490
Cdd:PHA03247 2912 ------QAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPS 2985


                  ....*....
gi 350276194  491 SPFSPFSPS 499
Cdd:PHA03247 2986 REAPASSTP 2994
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
609-635 5.26e-05

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 40.64  E-value: 5.26e-05
                          10        20
                  ....*....|....*....|....*..
gi 350276194  609 EKKEYCMYYNRFGKCNRGQNCPFIHDP 635
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
ZnF_C3H1 smart00356
zinc finger;
691-717 6.18e-05

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 40.69  E-value: 6.18e-05
                           10        20
                   ....*....|....*....|....*..
gi 350276194   691 SRKAEICKDFLKGYCPLGAKCKKKHTL 717
Cdd:smart00356   1 KYKTELCKFFKRGYCPRGDRCKFAHPL 27
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 103-466 5.90e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 39.94  E-value: 5.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  103 AATTALSPVCLTatvaqKSQAALSVPATE-QSKLTSKGSTNSLPKPKAQTAPSKQTSAKHLAPTATPAQSAQRVGAPTAG 181
Cdd:pfam17823  62 AATAAPAPVTLT-----KGTSAAHLNSTEvTAEHTPHGTDLSEPATREGAADGAASRALAAAASSSPSSAAQSLPAAIAA 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  182 GSSVAGKHQK-RPPSQTICISSQESVrlhSQAAVPKPANPVPRTASSDSRGATPSNYIYSPPKPAASPPAPAKIPkVRKT 260
Cdd:pfam17823 137 LPSEAFSAPRaAACRANASAAPRAAI---AAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSAPATLTP-ARGI 212

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  261 KYTWVAN---SAKTSLAGKKLSPGGKKLNEENDKGQSPAAsMAAPKKKVGVAPKSGTVRNRYKWKAESPGPTAKVHSAKK 337
Cdd:pfam17823 213 STAATATghpAAGTALAAVGNSSPAAGTVTAAVGTVTPAA-LATLAAAAGTVASAAGTINMGDPHARRLSPAKHMPSDTM 291

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  338 TQEPPVQTTPKA----------SPHLLFKGQGPPTAPKLPLRDSAHSHYKVKSRTKIIRRRSSSSSPTdkkASPLaPVSV 407
Cdd:pfam17823 292 ARNPAAPMGAQAqgpiiqvstdQPVHNTAGEPTPSPSNTTLEPNTPKSVASTNLAVVTTTKAQAKEPS---ASPV-PVLH 367

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 350276194  408 RSRYCLRRRSSPRVKS---PVVQRRSSPRGLIHITKHKLRRLPPSKQHDPT---KAGPPTTAMRS 466
Cdd:pfam17823 368 TSMIPEVEATSPTTQPsplLPTQGAAGPGILLAPEQVATEATAGTASAGPTprsSGDPKTLAMAS 432
 
Name Accession Description Interval E-value
YTH1 COG5084
Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin ...
 613-732 9.63e-13

Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only];


Pssm-ID: 227416 [Multi-domain]  Cd Length: 285  Bit Score: 69.51  E-value: 9.63e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194 613 YCMYYNRFGKCNRGQNCPFIHDPEKVA---VCTRFLRGTCKKTDGtCPFSHKVS--KDKMPVCSYF-LKGICHN-NDCPY 685
Cdd:COG5084   76 ACISRNFNSIRGSRLSTPNNHVNPVLSssvVCKFFLRGLCKSGFS-CEFLHEYDlrSSQGPPCRSFsLKGSCSSgPSCGY 154

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 350276194 686 SHVYVSRKAEICK---DFLKGYCPLGAKCKKKHTLQ--------CPDYaRDGKCPNGA 732
Cdd:COG5084  155 SHIDPDSFAGNCDqysGATYGFCPLGASCKFSHTLKrvsygsspCGNY-TPPFSPPGT 211
PHA03247 PHA03247
large tegument protein UL36; Provisional
 29-499 1.88e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 1.88e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194   29 PAPPAPASTRWRNPAQPPYRAQGAFRGGHTQRAGgfigpAQEQPNQGwknkyslvnrtvlaSTGTADAGNKGGRAATTAL 108
Cdd:PHA03247 2557 PAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPD-----APPQSARP--------------RAPVDDRGDPRGPAPPSPL 2617

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  109 SPvcltATVAQKSQAALSVPATEQSKLTSKGSTNSLPKPKAQTAPS-----KQTSAKHLAPTAT-PAQSAQRVGAPTAGG 182
Cdd:PHA03247 2618 PP----DTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGrvsrpRRARRLGRAAQASsPPQRPRRRAARPTVG 2693

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  183 S--SVAGKH------QKRPPSQTICISSQESVRLHSQAAVPKPANPVPRTASSDSrgATPSNYIYSPPKPAASPPAPAKI 254
Cdd:PHA03247 2694 SltSLADPPpppptpEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGP--ATPGGPARPARPPTTAGPPAPAP 2771

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  255 PKVRKTKytwvANSAKTSLAGKKLSPGGKKLNEENDKGQSPAASMAAPKKKVGVAPKSGTVrnrykwkaesPGPTAKVHS 334
Cdd:PHA03247 2772 PAAPAAG----PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPL----------PPPTSAQPT 2837

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  335 AKKTQEPPVQTTPK----ASPHLLFKGQGPPTAPKLPLRDSAHSHYKVKSRTKIIRRRSSSSSPTDKKASPLAPvsvrsr 410
Cdd:PHA03247 2838 APPPPPGPPPPSLPlggsVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQP------ 2911

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  411 yclrrrSSPRVKSPVVQRRSSPRGLIHITKHKLRRLPPSKQHDPTKAGPPTTAMRSPPSSRVIKTRYRIVKKNVSALHPA 490
Cdd:PHA03247 2912 ------QAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPS 2985


                  ....*....
gi 350276194  491 SPFSPFSPS 499
Cdd:PHA03247 2986 REAPASSTP 2994
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
609-635 5.26e-05

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 40.64  E-value: 5.26e-05
                          10        20
                  ....*....|....*....|....*..
gi 350276194  609 EKKEYCMYYNRFGKCNRGQNCPFIHDP 635
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
ZnF_C3H1 smart00356
zinc finger;
691-717 6.18e-05

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 40.69  E-value: 6.18e-05
                           10        20
                   ....*....|....*....|....*..
gi 350276194   691 SRKAEICKDFLKGYCPLGAKCKKKHTL 717
Cdd:smart00356   1 KYKTELCKFFKRGYCPRGDRCKFAHPL 27
PHA03247 PHA03247
large tegument protein UL36; Provisional
 26-472 7.93e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.39  E-value: 7.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194   26 GNVPAPPAPASTRWRNPAQPPYRAQGAFRGGHTQRAGGFIGPAQEQPNQGwknkySLVNRTVLASTGTADAGNKGGRAAT 105
Cdd:PHA03247 2606 GDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDD-----PAPGRVSRPRRARRLGRAAQASSPP 2680

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  106 TALSPVCLTATVAQKSQAALSVPATEQSKltskgstnslPKPKAQTAPSKQTSAKHLAPTATPAQSAQRVGAPTAGGSSV 185
Cdd:PHA03247 2681 QRPRRRAARPTVGSLTSLADPPPPPPTPE----------PAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPAT 2750

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  186 AGKhQKRPPSQTICISSQESVRLHSQAAVPKPANPVPRTAS-SDSRGATPSNYIYSPPKPAASPPAPAKIPkvrktkytw 264
Cdd:PHA03247 2751 PGG-PARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASlSESRESLPSPWDPADPPAAVLAPAAALPP--------- 2820

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  265 vansakTSLAGKKLSPGGKKLNEENDKGQSPAASMAAPKKkvGVAPkSGTVRNRYKWKAESPGPTAKVH-SAKKTQEPPV 343
Cdd:PHA03247 2821 ------AASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGG--SVAP-GGDVRRRPPSRSPAAKPAAPARpPVRRLARPAV 2891

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  344 QTTPKASPHllfkgqgPPTAPKLPLRDSAHSHYKVKSRTKIIRRRSSSSSPTDKKASPLAPVSVRSryclrRRSSPRVKS 423
Cdd:PHA03247 2892 SRSTESFAL-------PPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPA-----GAGEPSGAV 2959

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*....
gi 350276194  424 PVVQRRSSPRGLIHITKhklRRLPPSKQHDPTKAgPPTTAMRSPPSSRV 472
Cdd:PHA03247 2960 PQPWLGALVPGRVAVPR---FRVPQPAPSREAPA-SSTPPLTGHSLSRV 3004
PHA03247 PHA03247
large tegument protein UL36; Provisional
 123-586 1.53e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.23  E-value: 1.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  123 AALSVPATEQSKLTSKGStnslPKPKAQTAPSKQTSakhlaPTATPAQSAQRV--------GAPTAGGSSVAGKHQKRPP 194
Cdd:PHA03247 2557 PAAPPAAPDRSVPPPRPA----PRPSEPAVTSRARR-----PDAPPQSARPRApvddrgdpRGPAPPSPLPPDTHAPDPP 2627

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  195 SQTiciSSQESVRLHSQAAVPKPANPVPRTASSDSRGATPSNYIYSPPKPAASPPAPAKIPKVRKTKYTWVANSAKTSLA 274
Cdd:PHA03247 2628 PPS---PSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPP 2704

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  275 GKKLSPGGKKLNEENDKGQSPA----ASMAAPKKKVGVAPKSGTVRNRYKWKAESPGPTAKVHSAKKTQEPPVQTTPKAS 350
Cdd:PHA03247 2705 PPTPEPAPHALVSATPLPPGPAaarqASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLT 2784

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  351 PhllfkgqgPPTAPKLPLRDSAHSHYKVKSRTKIIRRRSSSSSPTDKKASPLAPVSVRSRyclrrrSSPRVKSPVVQRRS 430
Cdd:PHA03247 2785 R--------PAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQP------TAPPPPPGPPPPSL 2850

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  431 SPRGLIhITKHKLRRLPPSKQHDPTKAG---PPTTAMRSPPSSRVIKTRyrivkknvsALHPASPFSPFSPSLSWRSRVL 507
Cdd:PHA03247 2851 PLGGSV-APGGDVRRRPPSRSPAAKPAAparPPVRRLARPAVSRSTESF---------ALPPDQPERPPQPQAPPPPQPQ 2920

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 350276194  508 LVHQIRQLSQSSRFPHPQqrwksrgirciggvmyrvSANKLSKTSSPGPVSKLSPRAGSLDLSSTSPGSLYPSRTTTPS 586
Cdd:PHA03247 2921 PQPPPPPQPQPPPPPPPR------------------PQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQ 2981
ZnF_C3H1 smart00356
zinc finger;
608-635 3.43e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 35.68  E-value: 3.43e-03
                           10        20
                   ....*....|....*....|....*...
gi 350276194   608 KEKKEYCMYYnRFGKCNRGQNCPFIHDP 635
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAHPL 27
ZnF_C3H1 smart00356
zinc finger;
664-689 4.13e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 35.30  E-value: 4.13e-03
                           10        20
                   ....*....|....*....|....*..
gi 350276194   664 KDKMPVCSYFLKGIC-HNNDCPYSHVY 689
Cdd:smart00356   1 KYKTELCKFFKRGYCpRGDRCKFAHPL 27
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 103-466 5.90e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 39.94  E-value: 5.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  103 AATTALSPVCLTatvaqKSQAALSVPATE-QSKLTSKGSTNSLPKPKAQTAPSKQTSAKHLAPTATPAQSAQRVGAPTAG 181
Cdd:pfam17823  62 AATAAPAPVTLT-----KGTSAAHLNSTEvTAEHTPHGTDLSEPATREGAADGAASRALAAAASSSPSSAAQSLPAAIAA 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  182 GSSVAGKHQK-RPPSQTICISSQESVrlhSQAAVPKPANPVPRTASSDSRGATPSNYIYSPPKPAASPPAPAKIPkVRKT 260
Cdd:pfam17823 137 LPSEAFSAPRaAACRANASAAPRAAI---AAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSAPATLTP-ARGI 212

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  261 KYTWVAN---SAKTSLAGKKLSPGGKKLNEENDKGQSPAAsMAAPKKKVGVAPKSGTVRNRYKWKAESPGPTAKVHSAKK 337
Cdd:pfam17823 213 STAATATghpAAGTALAAVGNSSPAAGTVTAAVGTVTPAA-LATLAAAAGTVASAAGTINMGDPHARRLSPAKHMPSDTM 291

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350276194  338 TQEPPVQTTPKA----------SPHLLFKGQGPPTAPKLPLRDSAHSHYKVKSRTKIIRRRSSSSSPTdkkASPLaPVSV 407
Cdd:pfam17823 292 ARNPAAPMGAQAqgpiiqvstdQPVHNTAGEPTPSPSNTTLEPNTPKSVASTNLAVVTTTKAQAKEPS---ASPV-PVLH 367

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 350276194  408 RSRYCLRRRSSPRVKS---PVVQRRSSPRGLIHITKHKLRRLPPSKQHDPT---KAGPPTTAMRS 466
Cdd:pfam17823 368 TSMIPEVEATSPTTQPsplLPTQGAAGPGILLAPEQVATEATAGTASAGPTprsSGDPKTLAMAS 432
ZnF_C3H1 smart00356
zinc finger;
636-660 8.22e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 34.53  E-value: 8.22e-03
                           10        20
                   ....*....|....*....|....*
gi 350276194   636 EKVAVCTRFLRGTCKKTDgTCPFSH 660
Cdd:smart00356   2 YKTELCKFFKRGYCPRGD-RCKFAH 25
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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