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Conserved domains on  [gi|82830449|ref|NP_001032600|]
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beta-defensin 40 precursor [Rattus norvegicus]

Protein Classification

Defensin_beta domain-containing protein( domain architecture ID 10464978)

Defensin_beta domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Defensin_beta pfam00711
Beta defensin; The beta defensins are antimicrobial peptides implicated in the resistance of ...
 25-60 1.10e-04

Beta defensin; The beta defensins are antimicrobial peptides implicated in the resistance of epithelial surfaces to microbial colonization.


:

Pssm-ID: 459914  Cd Length: 36  Bit Score: 35.68  E-value: 1.10e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 82830449   25 DTMKCVRGKNNCHMHRCPWFFVLISTCYSGKGSCCQ 60
Cdd:pfam00711  1 DPVSCRRNGGICRPGRCPGLERQIGTCGGGKLKCCR 36
 
Name Accession Description Interval E-value
Defensin_beta pfam00711
Beta defensin; The beta defensins are antimicrobial peptides implicated in the resistance of ...
 25-60 1.10e-04

Beta defensin; The beta defensins are antimicrobial peptides implicated in the resistance of epithelial surfaces to microbial colonization.


Pssm-ID: 459914  Cd Length: 36  Bit Score: 35.68  E-value: 1.10e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 82830449   25 DTMKCVRGKNNCHMHRCPWFFVLISTCYSGKGSCCQ 60
Cdd:pfam00711  1 DPVSCRRNGGICRPGRCPGLERQIGTCGGGKLKCCR 36
 
Name Accession Description Interval E-value
Defensin_beta pfam00711
Beta defensin; The beta defensins are antimicrobial peptides implicated in the resistance of ...
 25-60 1.10e-04

Beta defensin; The beta defensins are antimicrobial peptides implicated in the resistance of epithelial surfaces to microbial colonization.


Pssm-ID: 459914  Cd Length: 36  Bit Score: 35.68  E-value: 1.10e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 82830449   25 DTMKCVRGKNNCHMHRCPWFFVLISTCYSGKGSCCQ 60
Cdd:pfam00711  1 DPVSCRRNGGICRPGRCPGLERQIGTCGGGKLKCCR 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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