CD2-binding protein-like protein [Arabidopsis thaliana]
Protein Classification
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| OCRE super family | cl23757 | OCRE domain; The OCRE (OCtamer REpeat) domain contains 5 repeats of an 8-residue motif, which ... |
294-340 | 1.22e-06 | ||
OCRE domain; The OCRE (OCtamer REpeat) domain contains 5 repeats of an 8-residue motif, which were shown to form beta-strands. Based on the architectures of proteins containing OCRE domains, a role in RNA metabolism and/or signalling has been proposed. The actual alignment was detected with superfamily member cd16166: Pssm-ID: 304914 Cd Length: 54 Bit Score: 44.98 E-value: 1.22e-06
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| Name | Accession | Description | Interval | E-value | ||
| OCRE_SUA_like | cd16166 | OCRE domain found in Suppressor of ABI3-5 (SUA) and similar proteins; SUA is an RNA-binding ... |
294-340 | 1.22e-06 | ||
OCRE domain found in Suppressor of ABI3-5 (SUA) and similar proteins; SUA is an RNA-binding protein located in the nucleus and expressed in all plant tissues. It functions as a splicing factor that influences seed maturation by controlling alternative splicing of ABI3. The suppression of the cryptic ABI3 intron indicates a role of SUA in mRNA processing. SUA also interacts with the prespliceosomal component U2AF65, the larger subunit of the conserved pre-mRNA splicing factor U2AF. SUA contains two RNA recognition motifs surrounding a zinc finger domain, an OCtamer REpeat (OCRE) domain, and a Gly-rich domain close to the C-terminus. Pssm-ID: 293885 Cd Length: 54 Bit Score: 44.98 E-value: 1.22e-06
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| OCRE | pfam17780 | OCRE domain; The OCtamer REpeat (OCRE) has been annotated as a 42-residue sequence motif with ... |
315-340 | 1.79e-05 | ||
OCRE domain; The OCtamer REpeat (OCRE) has been annotated as a 42-residue sequence motif with 12 tyrosine residues in the spliceosome trans-regulatory elements RBM5 and RBM10 (RBM [RNA-binding motif]), which are known to regulate alternative splicing of Fas and Bcl-x pre-mRNA transcripts. The structure of the domain consists of an anti-parallel arrangement of six beta strands. Pssm-ID: 465502 Cd Length: 51 Bit Score: 41.46 E-value: 1.79e-05
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| Name | Accession | Description | Interval | E-value | ||
| OCRE_SUA_like | cd16166 | OCRE domain found in Suppressor of ABI3-5 (SUA) and similar proteins; SUA is an RNA-binding ... |
294-340 | 1.22e-06 | ||
OCRE domain found in Suppressor of ABI3-5 (SUA) and similar proteins; SUA is an RNA-binding protein located in the nucleus and expressed in all plant tissues. It functions as a splicing factor that influences seed maturation by controlling alternative splicing of ABI3. The suppression of the cryptic ABI3 intron indicates a role of SUA in mRNA processing. SUA also interacts with the prespliceosomal component U2AF65, the larger subunit of the conserved pre-mRNA splicing factor U2AF. SUA contains two RNA recognition motifs surrounding a zinc finger domain, an OCtamer REpeat (OCRE) domain, and a Gly-rich domain close to the C-terminus. Pssm-ID: 293885 Cd Length: 54 Bit Score: 44.98 E-value: 1.22e-06
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| OCRE | pfam17780 | OCRE domain; The OCtamer REpeat (OCRE) has been annotated as a 42-residue sequence motif with ... |
315-340 | 1.79e-05 | ||
OCRE domain; The OCtamer REpeat (OCRE) has been annotated as a 42-residue sequence motif with 12 tyrosine residues in the spliceosome trans-regulatory elements RBM5 and RBM10 (RBM [RNA-binding motif]), which are known to regulate alternative splicing of Fas and Bcl-x pre-mRNA transcripts. The structure of the domain consists of an anti-parallel arrangement of six beta strands. Pssm-ID: 465502 Cd Length: 51 Bit Score: 41.46 E-value: 1.79e-05
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