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Conserved domains on  [gi|194733723|ref|NP_001017751|]
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tRNA N6-adenosine threonylcarbamoyltransferase [Danio rerio]

Protein Classification

tRNA N6-adenosine threonylcarbamoyltransferase( domain architecture ID 19235180)

tRNA N6-adenosine threonylcarbamoyltransferase is part of the enzyme complex that is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ASKHA_NBD_OSGEP_like_euk cd24132
nucleotide-binding domain (NBD) of O-sialoglycoprotein endopeptidase (OSGEP) and similar ...
3-310 0e+00

nucleotide-binding domain (NBD) of O-sialoglycoprotein endopeptidase (OSGEP) and similar proteins mainly from eukaryotes; OSGEP (EC 2.3.1.234), also called tRNA N6-adenosine threonylcarbamoyltransferase, N6-L-threonylcarbamoyladenine synthase, t(6)A synthase, t(6)A37 threonylcarbamoyladenosine biosynthesis protein OSGEP, tRNA threonylcarbamoyladenosine biosynthesis protein OSGEP, is a component of the EKC/KEOPS complex that is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. The complex is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. OSGEP likely plays a direct catalytic role in this reaction but requires other protein(s) of the complex to fulfill this activity. OSGEP is the mammalian orthologue of kinase-associated endopeptidase Kae1.


:

Pssm-ID: 466982  Cd Length: 309  Bit Score: 705.46  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723   3 IVIGFEGSANKIGIGIIK-DGEVLSNPRRTYITPPGQGFLPGETAKHHRSVILTVLQEALDEAGLKAADIDCVAYTKGPG 81
Cdd:cd24132    1 IALGIEGSANKLGVGIVRsDGEILSNPRHTYITPPGQGFLPRDTAKHHRAHILDLVKEALKEAGITPSDIDCICYTKGPG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  82 MGAPLVTVAIVARTVAQLWGKPLLGVNHCIGHIEMGRLITNAQNPTVLYVSGGNTQVIAYSERRYRIFGETIDIAVGNCL 161
Cdd:cd24132   81 MGAPLQSVAVVARTLSQLWNKPLVGVNHCVGHIEMGRLVTGAQNPVVLYVSGGNTQVIAYSEKRYRIFGETIDIAVGNCL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723 162 DRFARVIKISNDPSPGYNIEQMAKKGNKYIELPYTVKGMDVSFSGILSYIEDAAHKMLSTDQCTPEDLCFSLQETVFAML 241
Cdd:cd24132  161 DRFARVLKLSNDPSPGYNIEQLAKKGKKLIELPYTVKGMDVSFSGILSYIEKLAKKKLKKGECTPEDLCFSLQETVFAML 240
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 194733723 242 VEITERAMAHCGSQEVLIVGGVGCNLRLQEMMGVMCKERGARIFATDESFCIDNGAMIAQAGWEMFRSG 310
Cdd:cd24132  241 VEITERAMAHCGSKEVLIVGGVGCNLRLQEMMGIMAEERGGKLFATDERYCIDNGAMIAQAGLLMFRSG 309
 
Name Accession Description Interval E-value
ASKHA_NBD_OSGEP_like_euk cd24132
nucleotide-binding domain (NBD) of O-sialoglycoprotein endopeptidase (OSGEP) and similar ...
3-310 0e+00

nucleotide-binding domain (NBD) of O-sialoglycoprotein endopeptidase (OSGEP) and similar proteins mainly from eukaryotes; OSGEP (EC 2.3.1.234), also called tRNA N6-adenosine threonylcarbamoyltransferase, N6-L-threonylcarbamoyladenine synthase, t(6)A synthase, t(6)A37 threonylcarbamoyladenosine biosynthesis protein OSGEP, tRNA threonylcarbamoyladenosine biosynthesis protein OSGEP, is a component of the EKC/KEOPS complex that is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. The complex is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. OSGEP likely plays a direct catalytic role in this reaction but requires other protein(s) of the complex to fulfill this activity. OSGEP is the mammalian orthologue of kinase-associated endopeptidase Kae1.


Pssm-ID: 466982  Cd Length: 309  Bit Score: 705.46  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723   3 IVIGFEGSANKIGIGIIK-DGEVLSNPRRTYITPPGQGFLPGETAKHHRSVILTVLQEALDEAGLKAADIDCVAYTKGPG 81
Cdd:cd24132    1 IALGIEGSANKLGVGIVRsDGEILSNPRHTYITPPGQGFLPRDTAKHHRAHILDLVKEALKEAGITPSDIDCICYTKGPG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  82 MGAPLVTVAIVARTVAQLWGKPLLGVNHCIGHIEMGRLITNAQNPTVLYVSGGNTQVIAYSERRYRIFGETIDIAVGNCL 161
Cdd:cd24132   81 MGAPLQSVAVVARTLSQLWNKPLVGVNHCVGHIEMGRLVTGAQNPVVLYVSGGNTQVIAYSEKRYRIFGETIDIAVGNCL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723 162 DRFARVIKISNDPSPGYNIEQMAKKGNKYIELPYTVKGMDVSFSGILSYIEDAAHKMLSTDQCTPEDLCFSLQETVFAML 241
Cdd:cd24132  161 DRFARVLKLSNDPSPGYNIEQLAKKGKKLIELPYTVKGMDVSFSGILSYIEKLAKKKLKKGECTPEDLCFSLQETVFAML 240
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 194733723 242 VEITERAMAHCGSQEVLIVGGVGCNLRLQEMMGVMCKERGARIFATDESFCIDNGAMIAQAGWEMFRSG 310
Cdd:cd24132  241 VEITERAMAHCGSKEVLIVGGVGCNLRLQEMMGIMAEERGGKLFATDERYCIDNGAMIAQAGLLMFRSG 309
PTZ00340 PTZ00340
O-sialoglycoprotein endopeptidase-like protein; Provisional
2-335 0e+00

O-sialoglycoprotein endopeptidase-like protein; Provisional


Pssm-ID: 240369  Cd Length: 345  Bit Score: 654.41  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723   2 TIVIGFEGSANKIGIGIIK-DGEVLSNPRRTYITPPGQGFLPGETAKHHRSVILTVLQEALDEAGLKAADIDCVAYTKGP 80
Cdd:PTZ00340   1 FLALGIEGSANKLGVGIVTsDGEILSNVRETYITPPGTGFLPRETAQHHREHILSLVKEALEEAKITPSDISLICYTKGP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  81 GMGAPLVTVAIVARTVAQLWGKPLLGVNHCIGHIEMGRLITNAQNPTVLYVSGGNTQVIAYSERRYRIFGETIDIAVGNC 160
Cdd:PTZ00340  81 GMGAPLSVGAVVARTLSLLWGKPLVGVNHCVAHIEMGRLVTGAENPVVLYVSGGNTQVIAYSEHRYRIFGETIDIAVGNC 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723 161 LDRFARVIKISNDPSPGYNIEQMAKKGNKYIELPYTVKGMDVSFSGILSYIEDAAHKMLSTD----------QCTPEDLC 230
Cdd:PTZ00340 161 LDRFARLLNLSNDPAPGYNIEQLAKKGKNLIELPYVVKGMDMSFSGILTYIEDLVEHPQFKDvvseivppeeEFFTDDLC 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723 231 FSLQETVFAMLVEITERAMAHCGSQEVLIVGGVGCNLRLQEMMGVMCKERGARIFATDESFCIDNGAMIAQAGWEMFRSG 310
Cdd:PTZ00340 241 FSLQETIFAMLVEVTERAMSHCGSNEVLIVGGVGCNLRLQEMMQQMAKERGGKLFAMDERYCIDNGAMIAYAGLLEYLSG 320
                        330       340
                 ....*....|....*....|....*
gi 194733723 311 HVTELPDSWITQRYRTDEVEVTWRD 335
Cdd:PTZ00340 321 GFTPLKDATVTQRFRTDEVDVTWRD 345
arch_KAE1 TIGR03722
universal archaeal protein Kae1; This family represents the archaeal protein Kae1. Its partner ...
5-333 4.49e-157

universal archaeal protein Kae1; This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 274747  Cd Length: 322  Bit Score: 442.47  E-value: 4.49e-157
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723    5 IGFEGSANKIGIGIIK-DGEVLSNPRRTYItPPGQGFLPGETAKHHRSVILTVLQEALDEAGLKAADIDCVAYTKGPGMG 83
Cdd:TIGR03722   1 LGIEGTAHTFGVGIVDeDGEILANVSDTYV-PEKGGIHPREAAEHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGPGLG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723   84 APLVTVAIVARTVAQLWGKPLLGVNHCIGHIEMGRLITNAQNPTVLYVSGGNTQVIAYSERRYRIFGETIDIAVGNCLDR 163
Cdd:TIGR03722  80 PCLRVGATAARALALKLNKPLVGVNHCVAHIEIGRLTTGAKDPVVLYVSGGNTQVIAYRNGRYRVFGETLDIGLGNALDK 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  164 FARVIKIsndPSPG-YNIEQMAKKGNKYIELPYTVKGMDVSFSGILSYIEDAAHKMLSTdqctpEDLCFSLQETVFAMLV 242
Cdd:TIGR03722 160 FAREVGL---GHPGgPKIEELAEKGKEYIELPYTVKGMDLSFSGLLTAALRAYKKGARL-----EDVCYSLQETAFAMLV 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  243 EITERAMAHCGSQEVLIVGGVGCNLRLQEMMGVMCKERGARIFATDESFCIDNGAMIAQAGWEMFRSGHVTELPDSWITQ 322
Cdd:TIGR03722 232 EVTERALAHTGKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIAYTGLLMYKHGVTIPVEESRVRQ 311
                         330
                  ....*....|.
gi 194733723  323 RYRTDEVEVTW 333
Cdd:TIGR03722 312 RWRTDEVEVPW 322
TsaD pfam00814
tRNA N6-adenosine threonylcarbamoyltransferase; This domain can be found in Kae1/Qri7/YgjD, ...
23-300 6.63e-113

tRNA N6-adenosine threonylcarbamoyltransferase; This domain can be found in Kae1/Qri7/YgjD, products of COG0533 that belong to a small group of 60 proteins that are present in all three domains of life. COG0533 proteins are suggest to play a role in a post translational modification of certain tRNAs. For example, YgjD along with YeaZ, YjeE, and YrdC have been deemed necessary and sufficient for the tRNA modification. This modification involves the formation of N6-threonyl carbamoyl adenosine (t6A) at position 37 in the anti-codon stem loop which is critical for translational speed and accuracy. Structural analysis indicate that YeaZ lacks resemblance to any known protease active site. Together with the absence of a putative zinc-binding motif. Thus the likelyhood of it being a protease, as previously thought, has been negated. EC:2.3.1.234


Pssm-ID: 395656  Cd Length: 272  Bit Score: 328.57  E-value: 6.63e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723   23 EVLSN---PRRTYITPPGqGFLPGETAKHHRSVILTVLQEALDEAGLKAADIDCVAYTKGPGMGAPLVTVAIVARTVAQL 99
Cdd:pfam00814   1 EILANvilSQKDLHAPYG-GVVPELASRHHSERLMPLIDEALAEAGLSLEDLDAIAVTKGPGLFTGLRVGASFAKGLALA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  100 WGKPLLGVNHCIGHIEMGRLITNAQNPTVLYVSGGNTQVIAYSERRYRIFGETIDIAVGNCLDRFARVIKISNDPSPgyN 179
Cdd:pfam00814  80 LNKPLVGVNHLEAHALAARLETGLEFPVVLLVSGGHTQVYAAKDGRYEILGETLDDAAGEAFDKVARLLGLPYPGGP--K 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  180 IEQMAKKGnkYIELPYTVKGMDVSFSGILSYIEDAAHKmlstdQCTPEDLCFSLQETVFAMLVEITERAMAHCGSQEVLI 259
Cdd:pfam00814 158 IEKLAKEG--AFEFPRPVKGMDFSFSGLKTAVLRLIEK-----KEPKEDIAASFQEAVFDHLAEKTERALKLPGAKELVI 230
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 194733723  260 VGGVGCNLRLQEMMGVMCKERGARIFATDESFCIDNGAMIA 300
Cdd:pfam00814 231 LGGVAANKRLREALTEMAEERGVKLFAPPLEYCTDNGAMIA 271
TsaD COG0533
tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]; ...
46-315 4.05e-72

tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]; tRNA A37 threonylcarbamoyltransferase TsaD is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440299  Cd Length: 333  Bit Score: 226.43  E-value: 4.05e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  46 AKHHRSVILTVLQEALDEAGLKAADIDCVAYTKGPG-MGAPLVTVAiVARTVAQLWGKPLLGVNHCIGHIEMGRLITNAQ 124
Cdd:COG0533   48 SRAHLENILPLVEEALEEAGVTLKDIDAIAVTAGPGlIGALLVGVS-FAKALALALGKPLIGVNHLEGHLLAPFLEDPPP 126
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723 125 N-PTV-LYVSGGNTQVIA-YSERRYRIFGETIDIAVGNCLDRFARVIKIsndPSP-GYNIEQMAKKGN-KYIELP---YT 196
Cdd:COG0533  127 EfPFLaLLVSGGHTQLVLvKGVGDYELLGETIDDAAGEAFDKVAKLLGL---GYPgGPAIDKLAKEGDpKAFRFPrpmLD 203
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723 197 VKGMDVSFSGI----LSYIEDaaHKMLSTDQcTPEDLCFSLQETVFAMLVEITERAMAHCGSQEVLIVGGVGCNLRLQEM 272
Cdd:COG0533  204 RPGLDFSFSGLktavLNYIEK--LKQKGEEQ-DKADIAASFQEAVVDVLVEKTRRALKETGVKRLVVAGGVAANSRLRER 280
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 194733723 273 MGVMCKERGARIFATDESFCIDNGAMIAQAGWEMFRSGHVTEL 315
Cdd:COG0533  281 LEELAEKRGIRLFFPPLELCTDNAAMIAAAGYERLKAGEFSDL 323
 
Name Accession Description Interval E-value
ASKHA_NBD_OSGEP_like_euk cd24132
nucleotide-binding domain (NBD) of O-sialoglycoprotein endopeptidase (OSGEP) and similar ...
3-310 0e+00

nucleotide-binding domain (NBD) of O-sialoglycoprotein endopeptidase (OSGEP) and similar proteins mainly from eukaryotes; OSGEP (EC 2.3.1.234), also called tRNA N6-adenosine threonylcarbamoyltransferase, N6-L-threonylcarbamoyladenine synthase, t(6)A synthase, t(6)A37 threonylcarbamoyladenosine biosynthesis protein OSGEP, tRNA threonylcarbamoyladenosine biosynthesis protein OSGEP, is a component of the EKC/KEOPS complex that is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. The complex is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. OSGEP likely plays a direct catalytic role in this reaction but requires other protein(s) of the complex to fulfill this activity. OSGEP is the mammalian orthologue of kinase-associated endopeptidase Kae1.


Pssm-ID: 466982  Cd Length: 309  Bit Score: 705.46  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723   3 IVIGFEGSANKIGIGIIK-DGEVLSNPRRTYITPPGQGFLPGETAKHHRSVILTVLQEALDEAGLKAADIDCVAYTKGPG 81
Cdd:cd24132    1 IALGIEGSANKLGVGIVRsDGEILSNPRHTYITPPGQGFLPRDTAKHHRAHILDLVKEALKEAGITPSDIDCICYTKGPG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  82 MGAPLVTVAIVARTVAQLWGKPLLGVNHCIGHIEMGRLITNAQNPTVLYVSGGNTQVIAYSERRYRIFGETIDIAVGNCL 161
Cdd:cd24132   81 MGAPLQSVAVVARTLSQLWNKPLVGVNHCVGHIEMGRLVTGAQNPVVLYVSGGNTQVIAYSEKRYRIFGETIDIAVGNCL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723 162 DRFARVIKISNDPSPGYNIEQMAKKGNKYIELPYTVKGMDVSFSGILSYIEDAAHKMLSTDQCTPEDLCFSLQETVFAML 241
Cdd:cd24132  161 DRFARVLKLSNDPSPGYNIEQLAKKGKKLIELPYTVKGMDVSFSGILSYIEKLAKKKLKKGECTPEDLCFSLQETVFAML 240
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 194733723 242 VEITERAMAHCGSQEVLIVGGVGCNLRLQEMMGVMCKERGARIFATDESFCIDNGAMIAQAGWEMFRSG 310
Cdd:cd24132  241 VEITERAMAHCGSKEVLIVGGVGCNLRLQEMMGIMAEERGGKLFATDERYCIDNGAMIAQAGLLMFRSG 309
PTZ00340 PTZ00340
O-sialoglycoprotein endopeptidase-like protein; Provisional
2-335 0e+00

O-sialoglycoprotein endopeptidase-like protein; Provisional


Pssm-ID: 240369  Cd Length: 345  Bit Score: 654.41  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723   2 TIVIGFEGSANKIGIGIIK-DGEVLSNPRRTYITPPGQGFLPGETAKHHRSVILTVLQEALDEAGLKAADIDCVAYTKGP 80
Cdd:PTZ00340   1 FLALGIEGSANKLGVGIVTsDGEILSNVRETYITPPGTGFLPRETAQHHREHILSLVKEALEEAKITPSDISLICYTKGP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  81 GMGAPLVTVAIVARTVAQLWGKPLLGVNHCIGHIEMGRLITNAQNPTVLYVSGGNTQVIAYSERRYRIFGETIDIAVGNC 160
Cdd:PTZ00340  81 GMGAPLSVGAVVARTLSLLWGKPLVGVNHCVAHIEMGRLVTGAENPVVLYVSGGNTQVIAYSEHRYRIFGETIDIAVGNC 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723 161 LDRFARVIKISNDPSPGYNIEQMAKKGNKYIELPYTVKGMDVSFSGILSYIEDAAHKMLSTD----------QCTPEDLC 230
Cdd:PTZ00340 161 LDRFARLLNLSNDPAPGYNIEQLAKKGKNLIELPYVVKGMDMSFSGILTYIEDLVEHPQFKDvvseivppeeEFFTDDLC 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723 231 FSLQETVFAMLVEITERAMAHCGSQEVLIVGGVGCNLRLQEMMGVMCKERGARIFATDESFCIDNGAMIAQAGWEMFRSG 310
Cdd:PTZ00340 241 FSLQETIFAMLVEVTERAMSHCGSNEVLIVGGVGCNLRLQEMMQQMAKERGGKLFAMDERYCIDNGAMIAYAGLLEYLSG 320
                        330       340
                 ....*....|....*....|....*
gi 194733723 311 HVTELPDSWITQRYRTDEVEVTWRD 335
Cdd:PTZ00340 321 GFTPLKDATVTQRFRTDEVDVTWRD 345
ASKHA_NBD_Kae1-like cd24096
nucleotide-binding domain (NBD) of Kae1 and similar proteins; Kae1 (EC 2.3.1.234), also called ...
3-310 0e+00

nucleotide-binding domain (NBD) of Kae1 and similar proteins; Kae1 (EC 2.3.1.234), also called kinase-associated endopeptidase 1, N6-L-threonylcarbamoyladenine synthase, t(6)A synthase, kinase-associated endopeptidase 1 (Kae1), t(6)A37 threonylcarbamoyladenosine biosynthesis protein Kae1, or tRNA threonylcarbamoyladenosine biosynthesis protein Kae1, is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. It is a component of the KEOPS complex that is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Kae1 likely plays a direct catalytic role in this reaction but requires other protein(s) of the complex to fulfill this activity. OSGEP (EC 2.3.1.234), also called tRNA N6-adenosine threonylcarbamoyltransferase, N6-L-threonylcarbamoyladenine synthase, t(6)A synthase, t(6)A37 threonylcarbamoyladenosine biosynthesis protein OSGEP, tRNA threonylcarbamoyladenosine biosynthesis protein OSGEP, is the mammalian orthologue of kinase-associated endopeptidase Kae1. The family also includes bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein (EC 2.3.1.234/EC 2.7.11.1), which contains a Kae1 domain and a Bud32 domain. The Kae1 domain may play a catalytic role and the Bud32 domain probably displays kinase activity that regulates Kae1 function.


Pssm-ID: 466946  Cd Length: 301  Bit Score: 508.51  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723   3 IVIGFEGSANKIGIGII-KDGEVLSNPRRTYITPPGqGFLPGETAKHHRSVILTVLQEALDEAGLKAADIDCVAYTKGPG 81
Cdd:cd24096    1 ICLGIEGTAHTFGVGIVdSDGKVLANVRDMYTPPKG-GIHPREAADHHAEVFDKLLSEALEEAGVTINDIDLIAFSQGPG 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  82 MGAPLVTVAIVARTVAQLWGKPLLGVNHCIGHIEMGRLITNAQNPTVLYVSGGNTQVIAYSERRYRIFGETIDIAVGNCL 161
Cdd:cd24096   80 LGPSLRVTATVARTLAVLLNKPIIGVNHCIAHIEIGKLTTGAKDPVVLYVSGGNTQVIAYVGKRYRVFGETLDIGIGNCL 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723 162 DRFARVIKISndPSPGYNIEQMAKKGNKYIELPYTVKGMDVSFSGILSYIEDAAHKMlstdqCTPEDLCFSLQETVFAML 241
Cdd:cd24096  160 DQFARELGLP--FPGGPKIEKLAEKGKKLIDLPYTVKGMDVSFSGLLTAAERAYKSG-----YRKEDLCYSLQETAFAML 232
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 194733723 242 VEITERAMAHCGSQEVLIVGGVGCNLRLQEMMGVMCKERGARIFATDESFCIDNGAMIAQAGWEMFRSG 310
Cdd:cd24096  233 VEITERALAHTGKDEVLLVGGVAANNRLREMLKAMCEDRGIKFFVPPKEYCGDNGAMIAWTGLLMYKAG 301
ASKHA_NBD_Kae1_TsaD cd24031
nucleotide-binding domain (NBD) of the Kae1/TsaD family tRNA N6-adenosine ...
4-309 3.06e-169

nucleotide-binding domain (NBD) of the Kae1/TsaD family tRNA N6-adenosine threonylcarbamoyltransferase; tRNA N6-adenosine threonylcarbamoyltransferase (EC 2.3.1.234), also called N6-L-threonylcarbamoyladenine synthase, t(6)A synthase, t(6)A37 threonylcarbamoyladenosine biosynthesis protein, or tRNA threonylcarbamoyladenosine biosynthesis protein, is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. It is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. The family includes different orthologous of tRNA N6-adenosine threonylcarbamoyltransferase, such as bacterial kinase-associated endopeptidase 1 (Kae1) and TsaD (also known as YgjD) protein, mammalian O-sialoglycoprotein endopeptidase (OSGEP) and yeast protein Kae1, as well as mammalian OSGEP-like protein 1 (OSGEPL1) and yeast protein Qri7, which are the mitochondrial versions of the universal Kae1/TsaD (also known as YgjD) protein and essential for mitochondrial genome maintenance.


Pssm-ID: 466881  Cd Length: 304  Bit Score: 472.74  E-value: 3.06e-169
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723   4 VIGFEGSANKIGIGII-KDGEVLSNPRRTYITPPGQGFLPGETAKHHRSVILTVLQEALDEAGLKAADIDCVAYTKGPGM 82
Cdd:cd24031    1 VLGIEGSADKTGVGIVdDEGKVLANQLDTYVTPKAGGIVPEEAARHHARKIVPLIQEALKESGLTAKDIDLIAYTQGPGL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  83 GAPLVTVAIVARTVAQLWGKPLLGVNHCIGHIEMGRLITNAQNPTVLYVSGGNTQVIAYSERRYRIFGETIDIAVGNCLD 162
Cdd:cd24031   81 GGALRVGATVARTLAVAWNKPIIGVNHCIGHLEIPKLNTPAFPPVALYVSGGNTQVIAYTGGRYRVFGETIDIAVGNALD 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723 163 RFARVIKIsnDPSPGYNIEQMAKKGNKYIELPYTVKGMDVSFSGILSYIEDAAHKMLsTDQCTPEDLCFSLQETVFAMLV 242
Cdd:cd24031  161 KFARELGL--DYPGGPLIEKMAAQGKKLVELPYTVKGMDFSFSGLLTAAARTYRDGG-TDEQTREDIAYSFQETVFDMLV 237
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 194733723 243 EITERAMAHCGSQEVLIVGGVGCNLRLQEMMGVMCKERGARIFATDESFCIDNGAMIAQAGWEMFRS 309
Cdd:cd24031  238 EKTERALAHTNKKEVVLVGGVSANNRLREMLATMCEKRGGEFFYPPPEFCTDNGAMIAYAGLEMFKA 304
PRK09605 PRK09605
bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase;
2-335 1.49e-160

bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase;


Pssm-ID: 236586 [Multi-domain]  Cd Length: 535  Bit Score: 459.35  E-value: 1.49e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723   2 TIVIGFEGSANKIGIGII-KDGEVLSNPRRTYiTPPGQGFLPGETAKHHRSVILTVLQEALDEAGLKAADIDCVAYTKGP 80
Cdd:PRK09605   1 MIVLGIEGTAWKTSAGIVdSDGDVLFNESDPY-KPPSGGIHPREAAEHHAEAIPKVIKEALEEAGLKPEDIDLVAFSQGP 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  81 GMGAPLVTVAIVARTVAQLWGKPLLGVNHCIGHIEMGRLITNAQNPTVLYVSGGNTQVIAYSERRYRIFGETIDIAVGNC 160
Cdd:PRK09605  80 GLGPCLRVVATAARALALSLDVPLIGVNHCVAHVEIGRLTTGAEDPVTLYVSGGNTQVLAYLNGRYRVFGETLDIGVGNA 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723 161 LDRFARVIKIsndPSP-GYNIEQMAKKGNKYIELPYTVKGMDVSFSGILSyiedAAhkMLSTDQCTP-EDLCFSLQETVF 238
Cdd:PRK09605 160 LDKFARHVGL---PHPgGPKIEKLAKDGKKYIDLPYVVKGMDFSFSGLLT----AA--KRAYDAGEPlEDVCYSLQETAF 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723 239 AMLVEITERAMAHCGSQEVLIVGGVGCNLRLQEMMGVMCKERGARIFATDESFCIDNGAMIAQAGWEMFRSGHVTELPDS 318
Cdd:PRK09605 231 AMLTEVTERALAHTGKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKAGDTLDIEDT 310
                        330
                 ....*....|....*..
gi 194733723 319 WITQRYRTDEVEVTWRD 335
Cdd:PRK09605 311 RVNPNFRTDEVEVTWIK 327
arch_KAE1 TIGR03722
universal archaeal protein Kae1; This family represents the archaeal protein Kae1. Its partner ...
5-333 4.49e-157

universal archaeal protein Kae1; This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 274747  Cd Length: 322  Bit Score: 442.47  E-value: 4.49e-157
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723    5 IGFEGSANKIGIGIIK-DGEVLSNPRRTYItPPGQGFLPGETAKHHRSVILTVLQEALDEAGLKAADIDCVAYTKGPGMG 83
Cdd:TIGR03722   1 LGIEGTAHTFGVGIVDeDGEILANVSDTYV-PEKGGIHPREAAEHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGPGLG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723   84 APLVTVAIVARTVAQLWGKPLLGVNHCIGHIEMGRLITNAQNPTVLYVSGGNTQVIAYSERRYRIFGETIDIAVGNCLDR 163
Cdd:TIGR03722  80 PCLRVGATAARALALKLNKPLVGVNHCVAHIEIGRLTTGAKDPVVLYVSGGNTQVIAYRNGRYRVFGETLDIGLGNALDK 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  164 FARVIKIsndPSPG-YNIEQMAKKGNKYIELPYTVKGMDVSFSGILSYIEDAAHKMLSTdqctpEDLCFSLQETVFAMLV 242
Cdd:TIGR03722 160 FAREVGL---GHPGgPKIEELAEKGKEYIELPYTVKGMDLSFSGLLTAALRAYKKGARL-----EDVCYSLQETAFAMLV 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  243 EITERAMAHCGSQEVLIVGGVGCNLRLQEMMGVMCKERGARIFATDESFCIDNGAMIAQAGWEMFRSGHVTELPDSWITQ 322
Cdd:TIGR03722 232 EVTERALAHTGKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIAYTGLLMYKHGVTIPVEESRVRQ 311
                         330
                  ....*....|.
gi 194733723  323 RYRTDEVEVTW 333
Cdd:TIGR03722 312 RWRTDEVEVPW 322
ASKHA_NBD_Kae1_arch_bac cd24131
nucleotide-binding domain (NBD) of tRNA N6-adenosine threonylcarbamoyltransferase (Kae1) and ...
3-331 4.30e-156

nucleotide-binding domain (NBD) of tRNA N6-adenosine threonylcarbamoyltransferase (Kae1) and similar proteins mainly from archaea and bacteria; Kae1 (EC 2.3.1.234), also called N6-L-threonylcarbamoyladenine synthase, t(6)A synthase, t(6)A37 threonylcarbamoyladenosine biosynthesis protein Kae1, or tRNA threonylcarbamoyladenosine biosynthesis protein Kae1, is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. It is a component of the KEOPS complex that is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Kae1 likely plays a direct catalytic role in this reaction but requires other protein(s) of the complex to fulfill this activity. The family also includes bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein (EC 2.3.1.234/EC 2.7.11.1), which contains a Kae1 domain and a Bud32 domain. The Kae1 domain may play a catalytic role and the Bud32 domain probably displays kinase activity that regulates Kae1 function.


Pssm-ID: 466981  Cd Length: 323  Bit Score: 440.17  E-value: 4.30e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723   3 IVIGFEGSANKIGIGII-KDGEVLSNPRRTYITPPGqGFLPGETAKHHRSVILTVLQEALDEAGLKAADIDCVAYTKGPG 81
Cdd:cd24131    2 IVLGIEGTAHTFGVGIVdSEGEVLANVTDTYVPEKG-GIHPREAAEHHSEVAPELIKKALEEAGVSLNDIDLIAFSQGPG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  82 MGAPLVTVAIVARTVAQLWGKPLLGVNHCIGHIEMGRLITNAQNPTVLYVSGGNTQVIAYSERRYRIFGETIDIAVGNCL 161
Cdd:cd24131   81 LGPCLRVVATAARALALKLDKPLVGVNHCIAHIEIGRLTTGAKDPVTLYVSGGNTQVIAYVNGRYRVFGETLDIGIGNAL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723 162 DRFARVIKIsndPSPGY-NIEQMAKKGNKYIELPYTVKGMDVSFSGILSyiedAAHKMLSTDQcTPEDLCFSLQETVFAM 240
Cdd:cd24131  161 DKFAREVGL---GHPGGpKIEKLAEKGKKYVELPYTVKGMDLSFSGLLT----AALRAYKSGA-RLEDVCYSLQETAFAM 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723 241 LVEITERAMAHCGSQEVLIVGGVGCNLRLQEMMGVMCKERGARIFATDESFCIDNGAMIAQAGWEMFRSGHVTELPDSWI 320
Cdd:cd24131  233 LVEVTERALAHTGKDEVLLVGGVAANNRLREMLREMCEERGAKFYVPPPELCGDNGAMIAWTGLLMYKHGIRMSLEETIV 312
                        330
                 ....*....|.
gi 194733723 321 TQRYRTDEVEV 331
Cdd:cd24131  313 RPRFRTDEVDV 323
PRK14878 PRK14878
UGMP family protein; Provisional
5-335 1.20e-151

UGMP family protein; Provisional


Pssm-ID: 184878  Cd Length: 323  Bit Score: 428.57  E-value: 1.20e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723   5 IGFEGSANKIGIGIIKDGEVLSNPRRTYITPPGqGFLPGETAKHHRSVILTVLQEALDEAGLKAADIDCVAYTKGPGMGA 84
Cdd:PRK14878   1 LGIESTAHTLGVGIVKEDKVLANVRDTYVPEKG-GIHPREAAQHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPGLGP 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  85 PLVTVAIVARTVAQLWGKPLLGVNHCIGHIEMGRLITNAQNPTVLYVSGGNTQVIAYSERRYRIFGETIDIAVGNCLDRF 164
Cdd:PRK14878  80 ALRVGATAARALALKYNKPLVPVNHCIAHIEIGRLTTGAKDPVVLYVSGGNTQVLAFRGGRYRVFGETLDIAIGNALDTF 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723 165 ARVIKISndPSPGYNIEQMAKKGNKYIELPYTVKGMDVSFSGILSYIEDAA---HKMlstdqctpEDLCFSLQETVFAML 241
Cdd:PRK14878 160 AREVGLA--PPGGPAIEKCAEKGEKYIELPYVVKGQDLSFSGLLTAALRLYkgkERL--------EDVCYSLRETAFAML 229
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723 242 VEITERAMAHCGSQEVLIVGGVGCNLRLQEMMGVMCKERGARIFATDESFCIDNGAMIAQAGWEMFRSGHVTELPDSWIT 321
Cdd:PRK14878 230 VEVTERALAHTGKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPPEYAGDNGAMIAYTGLLAYKHGVTIPPEESFVR 309
                        330
                 ....*....|....
gi 194733723 322 QRYRTDEVEVTWRD 335
Cdd:PRK14878 310 QRWRLDEVDVPWRN 323
TsaD pfam00814
tRNA N6-adenosine threonylcarbamoyltransferase; This domain can be found in Kae1/Qri7/YgjD, ...
23-300 6.63e-113

tRNA N6-adenosine threonylcarbamoyltransferase; This domain can be found in Kae1/Qri7/YgjD, products of COG0533 that belong to a small group of 60 proteins that are present in all three domains of life. COG0533 proteins are suggest to play a role in a post translational modification of certain tRNAs. For example, YgjD along with YeaZ, YjeE, and YrdC have been deemed necessary and sufficient for the tRNA modification. This modification involves the formation of N6-threonyl carbamoyl adenosine (t6A) at position 37 in the anti-codon stem loop which is critical for translational speed and accuracy. Structural analysis indicate that YeaZ lacks resemblance to any known protease active site. Together with the absence of a putative zinc-binding motif. Thus the likelyhood of it being a protease, as previously thought, has been negated. EC:2.3.1.234


Pssm-ID: 395656  Cd Length: 272  Bit Score: 328.57  E-value: 6.63e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723   23 EVLSN---PRRTYITPPGqGFLPGETAKHHRSVILTVLQEALDEAGLKAADIDCVAYTKGPGMGAPLVTVAIVARTVAQL 99
Cdd:pfam00814   1 EILANvilSQKDLHAPYG-GVVPELASRHHSERLMPLIDEALAEAGLSLEDLDAIAVTKGPGLFTGLRVGASFAKGLALA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  100 WGKPLLGVNHCIGHIEMGRLITNAQNPTVLYVSGGNTQVIAYSERRYRIFGETIDIAVGNCLDRFARVIKISNDPSPgyN 179
Cdd:pfam00814  80 LNKPLVGVNHLEAHALAARLETGLEFPVVLLVSGGHTQVYAAKDGRYEILGETLDDAAGEAFDKVARLLGLPYPGGP--K 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  180 IEQMAKKGnkYIELPYTVKGMDVSFSGILSYIEDAAHKmlstdQCTPEDLCFSLQETVFAMLVEITERAMAHCGSQEVLI 259
Cdd:pfam00814 158 IEKLAKEG--AFEFPRPVKGMDFSFSGLKTAVLRLIEK-----KEPKEDIAASFQEAVFDHLAEKTERALKLPGAKELVI 230
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 194733723  260 VGGVGCNLRLQEMMGVMCKERGARIFATDESFCIDNGAMIA 300
Cdd:pfam00814 231 LGGVAANKRLREALTEMAEERGVKLFAPPLEYCTDNGAMIA 271
gcp_kae1 TIGR00329
metallohydrolase, glycoprotease/Kae1 family; This subfamily includes the well-studied secreted ...
5-300 7.82e-95

metallohydrolase, glycoprotease/Kae1 family; This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea. [Protein fate, Degradation of proteins, peptides, and glycopeptides]


Pssm-ID: 129429 [Multi-domain]  Cd Length: 305  Bit Score: 283.86  E-value: 7.82e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723    5 IGFEGSANKIGIGIIKD-GEVLSNPRRTYITPPGQ--GFLPGETAKHHRSVILTVLQEALDEAGLKAADIDCVAYTKGPG 81
Cdd:TIGR00329   1 LGIETSCDDTGVAIVDEeGNVLANIKISQIPLHAKygGVVPEEASRHHAENIPPLLERALIESNVDKSEIDLIAVTRGPG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723   82 MGAPLVTVAIVARTVAQLWGKPLLGVNHCIGHIEMGRLITN--AQNPTVLYVSGGNTQVIAY-SERRYRIFGETIDIAVG 158
Cdd:TIGR00329  81 LGGSLRVGATFARSLALALNKPLIGVNHLLGHIYIPRLDTNipQFPFVSLLVSGGHTQIILVkGIGDYEVLGETLDDAVG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  159 NCLDRFARVIKIsndPSP-GYNIEQMAKKGNK---YIELPYTVKGM-DVSFSGILSYIEDAAHKMLSTDQCTP-EDLCFS 232
Cdd:TIGR00329 161 EAFDKVARLLGL---GYPgGPKIEELAKKGDAlpfYFPLPYTVKPMlDFSFSGLKTAARRKIEKLGKNLNEATkEDIAYS 237
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 194733723  233 LQETVFAMLVEITERAMAHCGSQEVLIVGGVGCNLRLQEMMGVMCKERGARIFATDESFCIDNGAMIA 300
Cdd:TIGR00329 238 FQETAFDHLIEKTKRALKDTNPKELVLVGGVSANKRLREKLETLCQELNVEFYYPPLEFCSDNGAMIA 305
ASKHA_NBD_TsaD_bac cd24133
nucleotide-binding domain (NBD) of bacterial tRNA N6-adenosine threonylcarbamoyltransferase ...
4-315 6.66e-75

nucleotide-binding domain (NBD) of bacterial tRNA N6-adenosine threonylcarbamoyltransferase TsaD and similar proteins; TsaD (EC 2.3.1.234), also called N6-L-threonylcarbamoyladenine synthase, t(6)A synthase, t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD, or tRNA threonylcarbamoyladenosine biosynthesis protein TsaD, is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. It is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction.


Pssm-ID: 466983  Cd Length: 328  Bit Score: 233.53  E-value: 6.66e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723   4 VIGFEGSANKIGIGIIKDG-EVLSNPRRTYI---TPPGqGFLPGETAKHHRSVILTVLQEALDEAGLKAADIDCVAYTKG 79
Cdd:cd24133    1 ILGIETSCDETAVAVVDDGgKILSNVVSSQIdlhAKYG-GVVPEIASRAHLENIIPVVEEALEEAGLTLDDIDAIAVTYG 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  80 PG-MGAPLVTVAiVARTVAQLWGKPLLGVNHCIGHIEMGRLITNAQNP--TVLYVSGGNTQ-VIAYSERRYRIFGETIDI 155
Cdd:cd24133   80 PGlIGALLVGVS-FAKALAFALNKPLIGVNHLEGHILAPFLEDPPPEFpfLALLVSGGHTQlVLVKDFGRYELLGETRDD 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723 156 AVGNCLDRFARVIKIsndpspGY----NIEQMAKKGN-KYIELPYT---VKGMDVSFSGI----LSYIEDaaHKMLSTDQ 223
Cdd:cd24133  159 AAGEAFDKVAKLLGL------GYpggpAIDKLAKEGDpTAFVFPRPmlkRDGYDFSFSGLktavLNYLEK--NKQDGIEQ 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723 224 cTPEDLCFSLQETVFAMLVEITERAMAHCGSQEVLIVGGVGCNLRLQEMMGVMCKERGARIFATDESFCIDNGAMIAQAG 303
Cdd:cd24133  231 -NKADIAASFQEAVVDVLVEKTLRAAKETGIKRLVVAGGVAANSRLREKLEEAAEKRGLEVYIPPPELCTDNAAMIAAAG 309
                        330
                 ....*....|..
gi 194733723 304 WEMFRSGHVTEL 315
Cdd:cd24133  310 YYRYKRGKFADL 321
TsaD COG0533
tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]; ...
46-315 4.05e-72

tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]; tRNA A37 threonylcarbamoyltransferase TsaD is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440299  Cd Length: 333  Bit Score: 226.43  E-value: 4.05e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  46 AKHHRSVILTVLQEALDEAGLKAADIDCVAYTKGPG-MGAPLVTVAiVARTVAQLWGKPLLGVNHCIGHIEMGRLITNAQ 124
Cdd:COG0533   48 SRAHLENILPLVEEALEEAGVTLKDIDAIAVTAGPGlIGALLVGVS-FAKALALALGKPLIGVNHLEGHLLAPFLEDPPP 126
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723 125 N-PTV-LYVSGGNTQVIA-YSERRYRIFGETIDIAVGNCLDRFARVIKIsndPSP-GYNIEQMAKKGN-KYIELP---YT 196
Cdd:COG0533  127 EfPFLaLLVSGGHTQLVLvKGVGDYELLGETIDDAAGEAFDKVAKLLGL---GYPgGPAIDKLAKEGDpKAFRFPrpmLD 203
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723 197 VKGMDVSFSGI----LSYIEDaaHKMLSTDQcTPEDLCFSLQETVFAMLVEITERAMAHCGSQEVLIVGGVGCNLRLQEM 272
Cdd:COG0533  204 RPGLDFSFSGLktavLNYIEK--LKQKGEEQ-DKADIAASFQEAVVDVLVEKTRRALKETGVKRLVVAGGVAANSRLRER 280
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 194733723 273 MGVMCKERGARIFATDESFCIDNGAMIAQAGWEMFRSGHVTEL 315
Cdd:COG0533  281 LEELAEKRGIRLFFPPLELCTDNAAMIAAAGYERLKAGEFSDL 323
T6A_TsaD_YgjD TIGR03723
tRNA threonylcarbamoyl adenosine modification protein TsaD; This model represents bacterial ...
4-308 3.96e-71

tRNA threonylcarbamoyl adenosine modification protein TsaD; This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas (which lack a cell wall). A reasonable hypothesis is that virulence-related activities after export are secondary to a bacterial domain-wide unknown function. [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 274748  Cd Length: 313  Bit Score: 223.46  E-value: 3.96e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723    4 VIGFEGSANKIGIGIIKDG-EVLSNPRRTYI---TPPGqGFLPGETAKHHRSVILTVLQEALDEAGLKAADIDCVAYTKG 79
Cdd:TIGR03723   1 ILGIETSCDETAVAIVDDGkGLLSNVVASQIdlhARYG-GVVPELASRAHLENIPPLIEEALAEAGLTLSDIDAIAVTAG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723   80 PG-MGAPLVTVAiVARTVAQLWGKPLLGVNHCIGHIEMGRLITNAQNPTV-LYVSGGNTQ-VIAYSERRYRIFGETIDIA 156
Cdd:TIGR03723  80 PGlIGALLVGVS-FAKALALALNKPLIGVNHLEGHLLAPFLEKPLEFPFLaLLVSGGHTQlVLVKGVGDYELLGETLDDA 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  157 VGNCLDRFARVIKIsndPSP-GYNIEQMAKKGN-KYIELPytvKGM------DVSFSGI----LSYIEDAAHKMlstDQC 224
Cdd:TIGR03723 159 AGEAFDKVARLLGL---GYPgGPAIDRLAKQGDpKAFKFP---RPMldrpglDFSFSGLktavLNLIEKLKQKG---EEL 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  225 TPEDLCFSLQETVFAMLVEITERAMAHCGSQEVLIVGGVGCNLRLQEMMGVMCKERGARIFATDESFCIDNGAMIAQAGW 304
Cdd:TIGR03723 230 TKADIAASFQAAVVDVLVEKTKRALKKTGLKTLVVAGGVAANSRLRERLEELAEKRGLEVFFPPLELCTDNAAMIAAAGY 309

                  ....
gi 194733723  305 EMFR 308
Cdd:TIGR03723 310 ERLK 313
PRK09604 PRK09604
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD;
46-315 2.18e-70

tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD;


Pssm-ID: 236585  Cd Length: 332  Bit Score: 222.25  E-value: 2.18e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  46 AKHHRSVILTVLQEALDEAGLKAADIDCVAYTKGPG-MGAPLVTVAiVARTVAQLWGKPLLGVNHCIGHIEMGRLITNAQ 124
Cdd:PRK09604  48 SRAHVENIVPLIEEALKEAGLTLEDIDAIAVTAGPGlVGALLVGVS-FAKALALALNKPLIGVNHLEGHLLAPFLEEEPE 126
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723 125 NPTV-LYVSGGNTQ-VIAYSERRYRIFGETIDIAVGNCLDRFARVIKIsndpspGY----NIEQMAKKGN-KYIELP--Y 195
Cdd:PRK09604 127 FPFLaLLVSGGHTQlVLVKGIGDYELLGETLDDAAGEAFDKVAKLLGL------GYpggpAIDKLAKQGDpDAFKFPrpM 200
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723 196 TVKGMDVSFSGI----LSYIEDAAHkmlstdqcTPEDLCFSLQETVFAMLVEITERAMAHCGSQEVLIVGGVGCNLRLQE 271
Cdd:PRK09604 201 DRPGLDFSFSGLktavLNTIEKSEQ--------TKADIAASFQAAVVDVLVIKTKRALKQTGVKTLVVAGGVAANSGLRE 272
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 194733723 272 MMGVMCKERGARIFATDESFCIDNGAMIAQAGWEMFRSGHVTEL 315
Cdd:PRK09604 273 RLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKAGEFSDL 316
ASKHA_NBD_OSGEPL1_QRI7_euk cd24134
nucleotide-binding domain (NBD) of O-sialoglycoprotein endopeptidase-like protein 1 (OSGEPL1) ...
4-308 7.73e-63

nucleotide-binding domain (NBD) of O-sialoglycoprotein endopeptidase-like protein 1 (OSGEPL1) and similar proteins from eukayotes; The family includes mammalian OSGEPL1 and yeast QRI7, which are the mitochondrial orthologs of the universal Kae1/ TsaD (also known as YgjD) protein. OSGEPL1/QRI7 (EC 2.3.1.234), also called mitochondrial tRNA N6-adenosine threonylcarbamoyltransferase, N6-L-threonylcarbamoyladenine synthase, t(6)A synthase, t(6)A37 threonylcarbamoyladenosine biosynthesis protein, or tRNA threonylcarbamoyladenosine biosynthesis protein, is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in mitochondrial tRNAs that read codons beginning with adenine. It is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. It is involved in mitochondrial genome maintenance.


Pssm-ID: 466984  Cd Length: 330  Bit Score: 202.75  E-value: 7.73e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723   4 VIGFEGSANKIGIGIIK-DGEVLSNPRRTY--ITPPGQGFLPGETAKHHRSVILTVLQEALDEAGLKAADIDCVAYTKGP 80
Cdd:cd24134    1 VLGIETSCDDTGAAVVDsDGRILGEALASQkeIHEQYGGIVPTLAADLHRANIPRVVEEALEQAGLSLSDLDAVAVTVGP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  81 GMGAPLVtVAIV-ARTVAQLWGKPLLGVNHCIGHIEMGRLITNaqNPT----VLYVSGGNTQ-VIAYSERRYRIFGETID 154
Cdd:cd24134   81 GLALCLR-VGLEfAKGLAAAHNKPLIPVHHMEAHALTARLTEE--PVEfpflVLLVSGGHCLlVLARGVGDYTILGTTLD 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723 155 IAVGNCLDRFARVIKISNDP---SPGYNIEQMAKKGNKYIELPYTV-----KGMDVSFSGILSYIEDAAHKMLSTDQCTP 226
Cdd:cd24134  158 DAPGEAFDKVARLLGLKPLCdglSGGAALEALAKEGDPAAFKPFPVpmskrKDCDFSFSGLKTAVRRLIEKLEKEEGVGL 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723 227 E-----DLCFSLQETVFAMLVEITERAMAHCGSQEV----LIV-GGVGCNLRLQEMMGVMCKERGARIFATDESFCIDNG 296
Cdd:cd24134  238 SlperaDIAASFQHAAVRHLEDRLRRALKYCRELPPepktLVVsGGVASNQYLRKRLETLAEEHGLQLVCPPPRLCTDNG 317
                        330
                 ....*....|..
gi 194733723 297 AMIAQAGWEMFR 308
Cdd:cd24134  318 VMIAWAGIERLR 329
ASKHA_NBD_Kae1_TsaB-like cd24001
nucleotide-binding domain (NBD) of the Kae1/TsaB-like domain family; The family includes tRNA ...
4-304 2.97e-61

nucleotide-binding domain (NBD) of the Kae1/TsaB-like domain family; The family includes tRNA N6-adenosine threonylcarbamoyltransferase Kae1/TsaD, tRNA threonylcarbamoyladenosine biosynthesis protein TsaB (previously known as YeaZ), as well as proteins from the NodU/CmcH subfamily. tRNA N6-adenosine threonylcarbamoyltransferase (EC 2.3.1.234) is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. It is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. TsaB is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. It may be involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaD and TsaE. TsaB seems to play an indirect role in the t(6)A biosynthesis pathway, possibly in regulating the core enzymatic function of TsaD. The NodU/CmcH family includes NodU from Rhizobium, CmcH from Amycolatopsis lactamdurans, the bifunctional carbamoyltransferase TobZ from Streptoalloteichus tenebrarius, NovN from Streptomyces niveus and NolNO from Sinorhizobium fredii. NodU is a Rhizobium nodulation protein involved in the synthesis of nodulation factors has 6-O-carbamoyltransferase-like activity. 3'-hydroxymethylcephem-O-carbamoyltransferase CmcH (EC 2.1.3.7) is involved in cephamycin (antibiotic) biosynthesis and has 3-hydroxymethylcephem carbamoyltransferase activity. nebramycin 5' synthase TobZ (EC 6.1.2.2) functions as an ATP carbamoyltransferase and tobramycin carbamoyltransferase. Novobiocin biosynthesis protein NovN (EC 2.1.3.12) acts as a carbamoyltransferase that mediates 3'-carbamoylation of the noviosyl ring to produce novobiocin, the final step in the novobiocin biosynthesis pathway. nodulation protein NolNO (EC 2.1.3.-) is involved in the O-carbamoylation of nod factors. The NodU/CmcH subfamily proteins consist of two domains. Only the N-terminal domain shows similarity with Kae1/TsaB-like domain, which belongs to the ASKHA (Acetate and Sugar Kinases/Hsc70/Actin) superfamily of phosphotransferases, all members of which share a common characteristic five-stranded beta sheet occurring in both the N- and C-terminal domains.


Pssm-ID: 466851 [Multi-domain]  Cd Length: 186  Bit Score: 193.82  E-value: 2.97e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723   4 VIGFEGSANKIGIGIIKDGEVLSNPRRTYITPPGQGFLPgETAKHHRSVILTVLQEALDEAGLKAADIDCVAYTKGPGMG 83
Cdd:cd24001    1 VLGIEGSAEDTGVAIVDDGGVLANHFETYVTEKTGGYPP-EAARHHARRIVPLIQEALAESGLTLDDIDAIAFGRGPGLG 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  84 APLVTVAIVARTVAQLWGKPLLGVNHCIGHIEMGRLITNAQNPTVLYVSGGNTQVIAYserryrifgetidiavgncldr 163
Cdd:cd24001   80 GALRVGATVARGLALAWDKPLIGVNHCIAHAEIAKLKTGATRPVALIVSGGNTQVIAY---------------------- 137
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723 164 farvikisndpspgynieqmakkgnkyielpytvkgmdvsfsgilsyiedaahkmlstdqctpedlcfslqetvfamlve 243
Cdd:cd24001      --------------------------------------------------------------------------------
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 194733723 244 iteramahcgsqEVLIVGGVGCNLRLQEMMGVMCKERGARIFATDESFCIDNGAMIAQAGW 304
Cdd:cd24001  138 ------------ELVLVGGVSANNRLREKLATMCEKRGDKFFVPPGEFCIDNGAMIAYAGL 186
ASKHA_NBD_TsaD-like cd24097
nucleotide-binding domain (NBD) of TsaD and similar proteins; TsaD (EC 2.3.1.234), also called ...
4-309 5.18e-52

nucleotide-binding domain (NBD) of TsaD and similar proteins; TsaD (EC 2.3.1.234), also called N6-L-threonylcarbamoyladenine synthase, t(6)A synthase, t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD, or tRNA threonylcarbamoyladenosine biosynthesis protein TsaD, is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. It is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction. The family also includes mammalian OSGEP-like protein 1 (OSGEPL1) and yeast protein Qri7, which are the mitochondrial versions of the universal Kae1/TsaD (also known as YgjD) protein and essential for mitochondrial genome maintenance.


Pssm-ID: 466947  Cd Length: 313  Bit Score: 174.40  E-value: 5.18e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723   4 VIGFEGSANKIGIGIIKDGE-VLSNPRRTY--ITPPGQGFLPGETAKHHRSVILTVLQEALDEAGLKAADIDCVAYTKGP 80
Cdd:cd24097    1 VLGIETSCDETGIAIYDDEKgLLANQLYSQvkLHADYGGVVPELASRDHVRKTVPLIQAALKESGLTAKDIDAVAYTAGP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  81 GMGAPLVTVAIVARTVAQLWGKPLLGVNHCIGHIEMGRLITNA-QNPTV-LYVSGGNTQVIAYSE-RRYRIFGETIDIAV 157
Cdd:cd24097   81 GLVGALLVGATVGRSLAFAWNVPAIPVHHMEGHLLAPMLEDNPpEFPFVaLLVSGGHTQLISVTGiGQYELLGESIDDAA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723 158 GNCLDRFARVIKIsnDPSPGYNIEQMAKKGNK---YIELPYTVK-GMDVSFSGILSYIEDAAHKMLSTDQcTPEDLCFSL 233
Cdd:cd24097  161 GEAFDKTAKLLGL--DYPGGPLLSKMAAQGTAgrfVFPRPMTDRpGLDFSFSGLKTFAANTIRDNGTDEQ-TRADIARAF 237
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 194733723 234 QETVFAMLVEITERAMAHCGSQEVLIVGGVGCNLRLQEMMGVMCKERGARIFATDESFCIDNGAMIAQAGWEMFRS 309
Cdd:cd24097  238 EDAVVDTLMIKCKRALDSTGFKRLVMAGGVSANRTLRAKLAEMMKKRRGEVFYARPEFCTDNGAMIAYAGMVRFKA 313
TsaB COG1214
tRNA A37 threonylcarbamoyladenosine modification protein TsaB [Translation, ribosomal ...
1-108 1.47e-10

tRNA A37 threonylcarbamoyladenosine modification protein TsaB [Translation, ribosomal structure and biogenesis]; tRNA A37 threonylcarbamoyladenosine modification protein TsaB is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440827  Cd Length: 227  Bit Score: 60.25  E-value: 1.47e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723   1 MTIvIGFEGSANKIGIGIIKDGEVLSnpRRTYITPpgqgflpgetaKHHRSVILTVLQEALDEAGLKAADIDCVAYTKGP 80
Cdd:COG1214    1 MLI-LAIDTSTEACSVALLDDGEVLA--EREENDG-----------RGHSERLLPMIDELLAEAGLTLSDLDAIAVGIGP 66
                         90       100       110
                 ....*....|....*....|....*....|.
gi 194733723  81 G--MGaplVTVAI-VARTVAQLWGKPLLGVN 108
Cdd:COG1214   67 GsfTG---LRIGVaTAKGLALALGIPLVGVS 94
T6A_YeaZ TIGR03725
tRNA threonylcarbamoyl adenosine modification protein YeaZ; This family describes a protein ...
7-108 1.75e-10

tRNA threonylcarbamoyl adenosine modification protein YeaZ; This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 274750 [Multi-domain]  Cd Length: 204  Bit Score: 59.59  E-value: 1.75e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723    7 FEGSANKIGIGIIKDGEVLSnpRRTYITPpgqgflpgetaKHHRSVILTVLQEALDEAGLKAADIDCVAYTKGPG--MGa 84
Cdd:TIGR03725   4 IDTSTEALSVALLDDGKVLA--ERTEPAG-----------RNHSERLLPMIEELLAEAGLSLQDLDAIAVGVGPGsfTG- 69
                          90       100
                  ....*....|....*....|....*
gi 194733723   85 plVTVAI-VARTVAQLWGKPLLGVN 108
Cdd:TIGR03725  70 --LRIGLaTAKGLALALGIPLVGVS 92
ASKHA_NBD_TsaB cd24032
nucleotide-binding domain (NBD) of tRNA threonylcarbamoyladenosine biosynthesis protein TsaB ...
4-108 1.41e-09

nucleotide-binding domain (NBD) of tRNA threonylcarbamoyladenosine biosynthesis protein TsaB (previously known as YeaZ) and similar proteins; TsaB, also called t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaB, is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. It may be involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaD and TsaE. TsaB seems to play an indirect role in the t(6)A biosynthesis pathway, possibly in regulating the core enzymatic function of TsaD. In fact, it can act as a protease that specifically degrades TsaD in vitro; therefore, TsaB may post-translationally regulate cellular pools of TsaD via proteolytic degradation. TsaB does not show sialoglycoprotease activity against glycophorin A.


Pssm-ID: 466882 [Multi-domain]  Cd Length: 205  Bit Score: 56.90  E-value: 1.41e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723   4 VIGFEGSANKIGIGIIKDGEVLSnprrtyitppgqgFLPGETAKHHRSVILTVLQEALDEAGLKAADIDCVAYTKGPG-- 81
Cdd:cd24032    1 ILAIDTSTSACSVALLKGGKILA-------------EYELDLGRRHSERLLPMIDELLKEAGLSLKDLDAIAVGIGPGsf 67
                         90       100
                 ....*....|....*....|....*...
gi 194733723  82 MGaplVTVAI-VARTVAQLWGKPLLGVN 108
Cdd:cd24032   68 TG---LRIGLaTAKGLALALGIPLVGVS 92
CHS_like cd00831
Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, ...
17-94 1.13e-03

Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.


Pssm-ID: 238427 [Multi-domain]  Cd Length: 361  Bit Score: 40.29  E-value: 1.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194733723  17 GIIKDGEVLSNPRRTYitPPGQGFLPGETAKHH------RSVILTVLQEALDEAGLKAADIDCVAYTKGPGMGAPLVTVA 90
Cdd:cd00831   49 GIETRYLVLPGGEETY--APRPEMSPSLDERNDialeeaRELAEEAARGALDEAGLRPSDIDHLVVNTSTGNPTPSLDAM 126

                 ....
gi 194733723  91 IVAR 94
Cdd:cd00831  127 LINR 130
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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