NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1022027649|gb|KZQ71495|]
View 

hypothetical protein A3N62_00660 [Enterobacter kobei]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YbfN super family cl16518
YbfN-like lipoprotein; This family of proteins is functionally uncharacterized. This family of ...
 22-107 9.55e-45

YbfN-like lipoprotein; This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 110 amino acids in length. Members of this family are lipoproteins.


The actual alignment was detected with superfamily member pfam13982:

Pssm-ID: 433624  Cd Length: 88  Bit Score: 139.74  E-value: 9.55e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022027649  22 APKEDSRLKEAYSACINTAQGSPEKIEACQSVLNVLKKEKAHEQFATQENIRVMDYQACIQARKTGNDQEVAKRCDKIWN 101
Cdd:pfam13982   3 APRQDSRLKEAYSACINTAEGNPDKIEACQSVLNVLKKEKQHQQFAEQESVRVLDYQQCINARKTGNDQAVKADCDKIWQ 82


                  ....*.
gi 1022027649 102 EIRNNN 107
Cdd:pfam13982  83 EIRANN 88
 
Name Accession Description Interval E-value
YbfN pfam13982
YbfN-like lipoprotein; This family of proteins is functionally uncharacterized. This family of ...
 22-107 9.55e-45

YbfN-like lipoprotein; This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 110 amino acids in length. Members of this family are lipoproteins.


Pssm-ID: 433624  Cd Length: 88  Bit Score: 139.74  E-value: 9.55e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022027649  22 APKEDSRLKEAYSACINTAQGSPEKIEACQSVLNVLKKEKAHEQFATQENIRVMDYQACIQARKTGNDQEVAKRCDKIWN 101
Cdd:pfam13982   3 APRQDSRLKEAYSACINTAEGNPDKIEACQSVLNVLKKEKQHQQFAEQESVRVLDYQQCINARKTGNDQAVKADCDKIWQ 82


                  ....*.
gi 1022027649 102 EIRNNN 107
Cdd:pfam13982  83 EIRANN 88
 
Name Accession Description Interval E-value
YbfN pfam13982
YbfN-like lipoprotein; This family of proteins is functionally uncharacterized. This family of ...
 22-107 9.55e-45

YbfN-like lipoprotein; This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 110 amino acids in length. Members of this family are lipoproteins.


Pssm-ID: 433624  Cd Length: 88  Bit Score: 139.74  E-value: 9.55e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022027649  22 APKEDSRLKEAYSACINTAQGSPEKIEACQSVLNVLKKEKAHEQFATQENIRVMDYQACIQARKTGNDQEVAKRCDKIWN 101
Cdd:pfam13982   3 APRQDSRLKEAYSACINTAEGNPDKIEACQSVLNVLKKEKQHQQFAEQESVRVLDYQQCINARKTGNDQAVKADCDKIWQ 82


                  ....*.
gi 1022027649 102 EIRNNN 107
Cdd:pfam13982  83 EIRANN 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH